Wall clock time and date at job start Tue Mar 31 2020 12:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50689 * 109.47267 * 120.00092 * 2 1 3 5 5 H 1.08008 * 120.00167 * 119.99624 * 4 2 1 6 6 C 1.37874 * 120.00382 * 300.00214 * 4 2 1 7 7 N 1.31517 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00613 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47178 * 89.99302 * 8 6 4 10 10 H 1.48499 * 109.47283 * 210.00021 * 8 6 4 11 11 H 1.48502 * 109.46646 * 329.99608 * 8 6 4 12 12 C 1.50700 * 109.46919 * 240.00420 * 2 1 3 13 13 O 1.21293 * 119.99767 * 239.99692 * 12 2 1 14 14 N 1.34777 * 120.00297 * 60.00242 * 12 2 1 15 15 C 1.47136 * 121.01896 * 179.97438 * 14 12 2 16 16 C 1.51046 * 110.47090 * 96.08079 * 15 14 12 17 17 C 1.52269 * 113.60964 * 64.38712 * 16 15 14 18 18 C 1.52572 * 111.15770 * 290.56281 * 17 16 15 19 19 C 1.51764 * 109.16678 * 85.20402 * 18 17 16 20 20 C 1.37945 * 120.03576 * 112.65383 * 19 18 17 21 21 C 1.38415 * 119.67863 * 177.10207 * 20 19 18 22 22 N 1.48016 * 119.92656 * 179.74175 * 21 20 19 23 23 O 1.21809 * 119.99862 * 359.97438 * 22 21 20 24 24 O 1.21795 * 119.99983 * 179.97438 * 22 21 20 25 25 C 1.38297 * 120.14773 * 0.02562 * 21 20 19 26 26 C 1.38167 * 120.22421 * 0.54177 * 25 21 20 27 27 C 1.38327 * 119.53549 * 290.86832 * 19 18 17 28 28 H 1.09000 * 109.46818 * 299.99761 * 1 2 3 29 29 H 1.09002 * 109.46740 * 59.99837 * 1 2 3 30 30 H 1.08992 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00608 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.30624 * 216.38419 * 15 14 12 33 33 H 1.08997 * 109.30724 * 335.77839 * 15 14 12 34 34 H 1.08999 * 108.65447 * 185.45022 * 16 15 14 35 35 H 1.08997 * 108.65663 * 303.45524 * 16 15 14 36 36 H 1.08999 * 109.14312 * 50.98998 * 17 16 15 37 37 H 1.09001 * 109.14314 * 170.12829 * 17 16 15 38 38 H 1.08998 * 109.52267 * 325.29782 * 18 17 16 39 39 H 1.08999 * 109.52350 * 205.10783 * 18 17 16 40 40 H 1.07996 * 120.16493 * 357.08179 * 20 19 18 41 41 H 1.07998 * 119.89107 * 180.54006 * 25 21 20 42 42 H 1.08006 * 120.17590 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6965 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1853 -0.9255 -3.6709 16 6 1.1369 -1.8797 -4.1923 17 6 -0.1405 -1.1903 -4.6523 18 6 -0.9119 -0.6137 -3.4689 19 6 -0.3666 0.7646 -3.1427 20 6 -1.1492 1.8824 -3.3450 21 6 -0.6672 3.1301 -2.9889 22 7 -1.5000 4.3338 -3.2089 23 8 -2.6080 4.2257 -3.7033 24 8 -1.0774 5.4322 -2.8955 25 6 0.5931 3.2552 -2.4333 26 6 1.3824 2.1376 -2.2410 27 6 0.9032 0.8865 -2.6078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7095 1.1617 3.4844 32 1 2.4052 -0.1796 -4.4347 33 1 3.0948 -1.4803 -3.4408 34 1 1.5562 -2.4333 -5.0324 35 1 0.8842 -2.5861 -3.4016 36 1 0.1160 -0.3836 -5.3388 37 1 -0.7700 -1.9133 -5.1711 38 1 -0.7934 -1.2663 -2.6040 39 1 -1.9683 -0.5360 -3.7257 40 1 -2.1331 1.7846 -3.7795 41 1 0.9616 4.2297 -2.1489 42 1 2.3667 2.2363 -1.8074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892854893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:09 Heat of formation + Delta-G solvation = -15.139318 kcal Electronic energy + Delta-G solvation = -27862.576185 eV Core-core repulsion = 24003.740970 eV Total energy + Delta-G solvation = -3858.835216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11879 -41.00482 -38.56376 -36.54373 -36.42826 -34.48613 -33.92127 -32.29363 -30.85891 -30.49861 -28.08498 -26.05801 -25.30351 -25.05625 -23.23486 -22.57551 -21.46847 -20.76557 -19.35725 -18.79144 -18.55114 -17.43098 -17.06621 -16.59739 -16.14334 -15.47571 -15.15726 -14.81551 -14.50611 -14.21507 -13.99798 -13.94201 -13.59105 -13.28984 -13.12321 -12.70793 -12.52287 -12.07962 -11.80759 -11.61976 -11.48904 -11.29873 -11.12706 -11.06081 -11.05604 -10.89794 -10.83787 -10.82429 -10.78544 -10.41109 -10.09431 -9.63752 -9.31667 -9.01532 -8.87836 -8.60775 -8.35229 -6.15126 -4.20171 -0.11377 0.94281 1.38339 1.49793 3.04614 3.15229 3.25855 3.32459 3.35426 3.38947 4.24221 4.35384 4.42076 4.61385 4.73127 4.78150 4.80235 4.97814 5.05901 5.18002 5.25260 5.34664 5.44686 5.46551 5.62092 5.72233 5.75401 5.83029 5.85211 5.92746 5.97693 6.15404 6.17332 6.23178 6.44130 6.48991 6.65094 6.67847 6.78060 7.25795 7.53588 7.72024 7.73871 7.91781 8.15276 8.77587 8.88749 9.46154 10.91984 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.005252 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.388431 B = 5330.070141 C = 6971.261922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.507 4.507 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.528 3.472 13 O -0.520 6.520 14 N -0.591 5.591 15 C 0.114 3.886 16 C -0.140 4.140 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.091 4.091 20 C -0.043 4.043 21 C -0.054 4.054 22 N 0.036 4.964 23 O -0.171 6.171 24 O -0.166 6.166 25 C -0.040 4.040 26 C -0.117 4.117 27 C 0.230 3.770 28 H 0.095 0.905 29 H 0.019 0.981 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 0.870 -15.155 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.545 4.545 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.321 3.679 13 O -0.393 6.393 14 N -0.323 5.323 15 C -0.007 4.007 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.138 4.138 22 N 0.553 4.447 23 O -0.385 6.385 24 O -0.381 6.381 25 C -0.060 4.060 26 C -0.138 4.138 27 C 0.136 3.864 28 H 0.113 0.887 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.867 -0.228 -14.799 14.918 hybrid contribution 0.004 0.023 0.875 0.875 sum -1.862 -0.205 -13.924 14.049 Atomic orbital electron populations 1.21931 0.96414 0.99911 1.01545 1.18933 0.94331 0.96830 0.88764 0.92750 1.21080 1.31542 1.13079 0.88842 0.90769 1.24940 0.94900 0.95007 0.99152 1.69861 1.36589 1.22877 1.23804 0.86441 0.78539 0.80228 0.81980 1.20546 1.21187 1.19716 1.22344 0.77903 0.84237 0.83411 1.90565 1.36889 1.26322 1.85508 1.46304 1.51423 1.27221 1.07396 1.21224 0.97860 0.95903 0.85726 1.21493 0.95813 0.99034 1.01540 1.21289 0.96513 1.00164 0.97048 1.20792 0.99427 0.91532 0.99727 1.20041 0.92619 0.95834 1.00886 1.20696 1.00531 0.88775 0.96240 1.21051 0.94351 0.85163 1.13216 1.43584 1.00860 1.02553 0.97694 1.94511 1.06281 1.93136 1.44564 1.94527 1.76331 1.13245 1.54036 1.20867 0.90449 1.01117 0.93592 1.21438 1.01372 0.90076 1.00865 1.17614 0.89192 0.87145 0.92405 0.88665 0.96265 0.95053 0.92761 0.91207 0.88813 0.90856 0.91150 0.91853 0.91018 0.89471 0.90264 0.82912 0.82741 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.74 37.16 0.32 -2.76 16 2 C 0.03 0.75 1.89 -92.93 -0.18 0.58 16 3 H 0.05 1.31 6.77 -51.93 -0.35 0.95 16 4 C -0.51 -13.69 8.37 -34.45 -0.29 -13.98 16 5 H 0.07 2.11 6.75 -52.48 -0.35 1.76 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.53 11.02 7.03 -10.99 -0.08 10.94 16 13 O -0.52 -12.36 15.06 5.55 0.08 -12.27 16 14 N -0.59 -9.36 2.30 -114.19 -0.26 -9.63 16 15 C 0.11 1.44 5.72 -4.68 -0.03 1.42 16 16 C -0.14 -1.51 5.51 -28.09 -0.15 -1.67 16 17 C -0.11 -1.05 5.62 -27.32 -0.15 -1.21 16 18 C -0.08 -0.86 5.49 -27.58 -0.15 -1.01 16 19 C -0.09 -1.15 3.60 -104.17 -0.38 -1.53 16 20 C -0.04 -0.53 9.19 -39.62 -0.36 -0.89 16 21 C -0.05 -0.75 6.86 -79.86 -0.55 -1.29 16 22 N 0.04 0.54 4.45 34.00 0.15 0.69 16 23 O -0.17 -2.63 18.45 -29.46 -0.54 -3.17 16 24 O -0.17 -2.62 18.44 -29.46 -0.54 -3.16 16 25 C -0.04 -0.53 9.54 -39.59 -0.38 -0.91 16 26 C -0.12 -1.62 8.53 -39.36 -0.34 -1.96 16 27 C 0.23 3.29 2.80 -83.84 -0.23 3.06 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.02 0.36 4.31 -51.93 -0.22 0.13 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.09 1.29 7.34 -51.93 -0.38 0.91 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.16 7.83 -51.93 -0.41 0.76 16 39 H 0.08 0.72 7.93 -51.93 -0.41 0.30 16 40 H 0.15 1.60 7.54 -52.49 -0.40 1.21 16 41 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 42 H 0.15 2.03 7.76 -52.48 -0.41 1.63 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -30.04 341.61 -8.68 -38.72 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.29 Total: 0.83 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -3.03 Total: -9.66 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.52 Total: -32.55 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.00 Total: -18.61 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.04 -8.68 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892854893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.583 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds