Wall clock time and date at job start Tue Mar 31 2020 12:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50689 * 109.47267 * 120.00092 * 2 1 3 5 5 H 1.08008 * 120.00167 * 119.99624 * 4 2 1 6 6 C 1.37874 * 120.00382 * 300.00214 * 4 2 1 7 7 N 1.31517 * 119.99928 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00613 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47178 * 89.99302 * 8 6 4 10 10 H 1.48499 * 109.47283 * 210.00021 * 8 6 4 11 11 H 1.48502 * 109.46646 * 329.99608 * 8 6 4 12 12 C 1.50700 * 109.46919 * 240.00420 * 2 1 3 13 13 O 1.21293 * 119.99767 * 239.99692 * 12 2 1 14 14 N 1.34777 * 120.00297 * 60.00242 * 12 2 1 15 15 C 1.47136 * 121.01896 * 179.97438 * 14 12 2 16 16 C 1.51046 * 110.47090 * 96.08079 * 15 14 12 17 17 C 1.52269 * 113.60964 * 64.38712 * 16 15 14 18 18 C 1.52572 * 111.15770 * 290.56281 * 17 16 15 19 19 C 1.51764 * 109.16678 * 85.20402 * 18 17 16 20 20 C 1.37945 * 120.03576 * 112.65383 * 19 18 17 21 21 C 1.38415 * 119.67863 * 177.10207 * 20 19 18 22 22 N 1.48016 * 119.92656 * 179.74175 * 21 20 19 23 23 O 1.21809 * 119.99862 * 359.97438 * 22 21 20 24 24 O 1.21795 * 119.99983 * 179.97438 * 22 21 20 25 25 C 1.38297 * 120.14773 * 0.02562 * 21 20 19 26 26 C 1.38167 * 120.22421 * 0.54177 * 25 21 20 27 27 C 1.38327 * 119.53549 * 290.86832 * 19 18 17 28 28 H 1.09000 * 109.46818 * 299.99761 * 1 2 3 29 29 H 1.09002 * 109.46740 * 59.99837 * 1 2 3 30 30 H 1.08992 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00608 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.30624 * 216.38419 * 15 14 12 33 33 H 1.08997 * 109.30724 * 335.77839 * 15 14 12 34 34 H 1.08999 * 108.65447 * 185.45022 * 16 15 14 35 35 H 1.08997 * 108.65663 * 303.45524 * 16 15 14 36 36 H 1.08999 * 109.14312 * 50.98998 * 17 16 15 37 37 H 1.09001 * 109.14314 * 170.12829 * 17 16 15 38 38 H 1.08998 * 109.52267 * 325.29782 * 18 17 16 39 39 H 1.08999 * 109.52350 * 205.10783 * 18 17 16 40 40 H 1.07996 * 120.16493 * 357.08179 * 20 19 18 41 41 H 1.07998 * 119.89107 * 180.54006 * 25 21 20 42 42 H 1.08006 * 120.17590 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4858 -2.5663 3.7118 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6965 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1853 -0.9255 -3.6709 16 6 1.1369 -1.8797 -4.1923 17 6 -0.1405 -1.1903 -4.6523 18 6 -0.9119 -0.6137 -3.4689 19 6 -0.3666 0.7646 -3.1427 20 6 -1.1492 1.8824 -3.3450 21 6 -0.6672 3.1301 -2.9889 22 7 -1.5000 4.3338 -3.2089 23 8 -2.6080 4.2257 -3.7033 24 8 -1.0774 5.4322 -2.8955 25 6 0.5931 3.2552 -2.4333 26 6 1.3824 2.1376 -2.2410 27 6 0.9032 0.8865 -2.6078 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7095 1.1617 3.4844 32 1 2.4052 -0.1796 -4.4347 33 1 3.0948 -1.4803 -3.4408 34 1 1.5562 -2.4333 -5.0324 35 1 0.8842 -2.5861 -3.4016 36 1 0.1160 -0.3836 -5.3388 37 1 -0.7700 -1.9133 -5.1711 38 1 -0.7934 -1.2663 -2.6040 39 1 -1.9683 -0.5360 -3.7257 40 1 -2.1331 1.7846 -3.7795 41 1 0.9616 4.2297 -2.1489 42 1 2.3667 2.2363 -1.8074 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892854893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:08 Heat of formation + Delta-G solvation = -29.838275 kcal Electronic energy + Delta-G solvation = -27863.213580 eV Core-core repulsion = 24003.740970 eV Total energy + Delta-G solvation = -3859.472610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.27840 -42.24157 -39.97567 -37.69673 -37.59384 -35.99153 -35.49430 -33.45283 -32.30558 -31.95868 -29.16586 -27.30833 -27.25130 -26.15595 -24.56130 -23.77990 -22.86406 -21.75499 -20.65306 -19.90773 -19.67174 -18.60767 -18.57222 -18.25828 -17.60956 -16.89189 -16.57826 -16.11743 -15.89867 -15.43616 -15.10316 -15.08521 -14.88511 -14.58034 -14.23653 -14.19867 -13.79238 -13.42651 -13.12713 -13.01759 -12.81133 -12.76319 -12.68152 -12.61103 -12.34261 -12.27508 -12.26597 -12.09328 -12.02861 -11.72329 -11.64938 -11.15573 -10.94627 -10.63980 -10.37058 -10.16514 -9.74048 -8.20249 -6.31672 -1.26964 -0.09568 0.22043 0.36444 1.37584 1.39305 1.49788 1.62822 1.78854 2.15296 2.40071 3.09755 3.25649 3.41436 3.56698 3.65631 3.81488 3.94135 4.00412 4.07687 4.21552 4.33127 4.45387 4.50410 4.58246 4.63273 4.70241 4.77789 4.81404 4.86089 4.88572 4.92195 5.02843 5.09299 5.19610 5.20861 5.30916 5.36840 5.39270 5.52614 5.65820 5.82079 6.08524 6.38083 6.53220 6.76222 7.17455 7.37923 8.84936 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.005252 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.388431 B = 5330.070141 C = 6971.261922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.532 3.468 13 O -0.559 6.559 14 N -0.579 5.579 15 C 0.108 3.892 16 C -0.137 4.137 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.085 4.085 20 C -0.032 4.032 21 C -0.060 4.060 22 N 0.035 4.965 23 O -0.165 6.165 24 O -0.189 6.189 25 C -0.039 4.039 26 C -0.123 4.123 27 C 0.208 3.792 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 0.897 -16.990 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.436 6.436 14 N -0.309 5.309 15 C -0.012 4.012 16 C -0.175 4.175 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.088 4.088 20 C -0.051 4.051 21 C -0.143 4.143 22 N 0.551 4.449 23 O -0.382 6.382 24 O -0.399 6.399 25 C -0.058 4.058 26 C -0.144 4.144 27 C 0.115 3.885 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.196 0.804 41 H 0.184 0.816 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.011 -0.139 -16.662 16.932 hybrid contribution 0.336 0.047 1.369 1.410 sum -2.674 -0.091 -15.293 15.525 Atomic orbital electron populations 1.21700 0.95494 0.99233 1.01622 1.18798 0.94993 0.96095 0.89267 0.93696 1.21246 1.31847 1.12891 0.90903 0.93098 1.25560 0.95041 0.95658 1.01381 1.69947 1.36928 1.23495 1.24364 0.85624 0.78404 0.78889 0.79187 1.19923 1.20208 1.20211 1.21707 0.77689 0.83626 0.84553 1.90539 1.38763 1.27873 1.86425 1.45994 1.50657 1.27377 1.06839 1.21523 0.98021 0.96893 0.84780 1.21478 0.96254 0.98230 1.01534 1.21289 0.95647 1.01003 0.96447 1.20907 1.01447 0.89843 0.99567 1.20188 0.91655 0.96953 0.99976 1.20951 1.01268 0.87740 0.95142 1.21209 0.94364 0.85128 1.13609 1.43749 1.00893 1.02798 0.97452 1.94494 1.06440 1.93172 1.44125 1.94535 1.76543 1.13818 1.54990 1.20963 0.90309 1.01407 0.93164 1.21462 1.01611 0.90284 1.01004 1.17833 0.90057 0.86586 0.93974 0.91339 0.93288 0.95967 0.92597 0.88263 0.90396 0.88109 0.93859 0.90372 0.88576 0.92031 0.87463 0.80389 0.81633 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.74 71.98 0.63 -4.84 16 2 C 0.03 1.41 1.89 -12.29 -0.02 1.39 16 3 H 0.05 2.22 6.77 -2.39 -0.02 2.21 16 4 C -0.53 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -49.92 11.32 21.45 0.24 -49.67 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.53 22.75 7.03 87.66 0.62 23.37 16 13 O -0.56 -27.63 15.06 -3.07 -0.05 -27.67 16 14 N -0.58 -18.08 2.30 -633.56 -1.46 -19.54 16 15 C 0.11 2.59 5.72 85.62 0.49 3.08 16 16 C -0.14 -2.65 5.51 29.72 0.16 -2.48 16 17 C -0.11 -1.59 5.62 30.21 0.17 -1.42 16 18 C -0.08 -1.54 5.49 30.05 0.16 -1.38 16 19 C -0.09 -1.93 3.60 -19.57 -0.07 -2.00 16 20 C -0.03 -0.68 9.19 22.24 0.20 -0.47 16 21 C -0.06 -1.50 6.86 36.43 0.25 -1.25 16 22 N 0.04 1.00 4.45 -46.33 -0.21 0.80 16 23 O -0.17 -4.68 18.45 18.87 0.35 -4.33 16 24 O -0.19 -5.73 18.44 18.89 0.35 -5.38 16 25 C -0.04 -0.97 9.54 22.27 0.21 -0.75 16 26 C -0.12 -3.31 8.53 22.41 0.19 -3.12 16 27 C 0.21 5.68 2.80 38.02 0.11 5.79 16 28 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16 29 H 0.05 1.83 4.31 -2.39 -0.01 1.82 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 32 H 0.10 1.81 8.06 -2.39 -0.02 1.79 16 33 H 0.08 2.14 7.34 -2.39 -0.02 2.12 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.09 7.96 -2.39 -0.02 1.07 16 36 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.55 7.83 -2.39 -0.02 1.53 16 39 H 0.11 1.47 7.93 -2.39 -0.02 1.45 16 40 H 0.18 2.94 7.54 -2.91 -0.02 2.91 16 41 H 0.17 3.68 7.60 -2.91 -0.02 3.66 16 42 H 0.15 4.03 7.76 -2.91 -0.02 4.00 16 Total: -1.00 -66.51 341.61 6.07 -60.43 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 3.77 Total: -11.75 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -1.42 Total: -68.41 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: 0.65 Total: -37.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.51 6.07 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892854893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.594 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds