Wall clock time and date at job start Tue Mar 31 2020 13:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21254 * 119.99566 * 2 1 4 4 C 1.47175 * 119.99993 * 180.02562 * 2 1 3 5 5 C 1.39951 * 120.52007 * 359.94923 * 4 2 1 6 6 N 1.31689 * 120.85355 * 180.02562 * 5 4 2 7 7 C 1.31773 * 122.08100 * 359.97438 * 6 5 4 8 8 C 1.39722 * 120.93598 * 0.02597 * 7 6 5 9 9 C 1.47741 * 120.48445 * 179.97438 * 8 7 6 10 10 O 1.21467 * 119.99963 * 180.02562 * 9 8 7 11 11 O 1.34703 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.45205 * 116.99729 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.45973 * 270.02294 * 12 11 9 14 14 C 1.53194 * 109.31100 * 178.59917 * 13 12 11 15 15 N 1.46927 * 108.76449 * 54.65969 * 14 13 12 16 16 C 1.36933 * 120.63250 * 126.39953 * 15 14 13 17 17 H 1.07999 * 120.00468 * 331.82920 * 16 15 14 18 18 C 1.38814 * 120.00016 * 151.82044 * 16 15 14 19 19 N 1.31618 * 119.99951 * 343.08512 * 18 16 15 20 20 Si 1.86802 * 119.99766 * 163.08369 * 18 16 15 21 21 H 1.48498 * 109.47353 * 60.00474 * 20 18 16 22 22 H 1.48509 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47215 * 300.00125 * 20 18 16 24 24 C 1.46923 * 118.73839 * 306.38305 * 15 14 13 25 25 C 1.53040 * 109.45848 * 149.96933 * 12 11 9 26 26 C 1.39760 * 119.03656 * 359.97228 * 8 7 6 27 27 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47327 * 299.99833 * 1 2 3 29 29 H 1.08999 * 109.47639 * 60.00016 * 1 2 3 30 30 H 1.08001 * 119.57386 * 0.04523 * 5 4 2 31 31 H 1.07998 * 119.53426 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.45657 * 29.99645 * 12 11 9 33 33 H 1.08998 * 109.50466 * 298.56971 * 13 12 11 34 34 H 1.09004 * 109.49776 * 58.66808 * 13 12 11 35 35 H 1.08993 * 109.60283 * 294.86905 * 14 13 12 36 36 H 1.09004 * 109.70303 * 174.50403 * 14 13 12 37 37 H 0.97001 * 119.99774 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.58422 * 293.82031 * 24 15 14 39 39 H 1.08997 * 109.70319 * 173.46363 * 24 15 14 40 40 H 1.08997 * 109.50144 * 301.34058 * 25 12 11 41 41 H 1.08997 * 109.49735 * 61.43520 * 25 12 11 42 42 H 1.07994 * 120.93813 * 179.72291 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5541 -2.4929 0.0000 6 7 2.2059 -3.6372 0.0000 7 6 3.5225 -3.6927 -0.0010 8 6 4.2906 -2.5256 -0.0016 9 6 5.7662 -2.5994 -0.0021 10 8 6.4254 -1.5792 -0.0021 11 8 6.3805 -3.7982 -0.0026 12 6 7.8325 -3.7949 -0.0037 13 6 8.3413 -3.7931 -1.4470 14 6 9.8727 -3.7542 -1.4443 15 7 10.3724 -4.8704 -0.6300 16 6 11.2826 -5.7556 -1.1431 17 1 11.3102 -5.9467 -2.2057 18 6 12.1698 -6.4072 -0.2974 19 7 12.3741 -5.9508 0.9201 20 14 13.0738 -7.9317 -0.8874 21 1 13.8961 -7.5906 -2.0761 22 1 13.9551 -8.4352 0.1967 23 1 12.0887 -8.9814 -1.2516 24 6 9.8773 -5.0187 0.7453 25 6 8.3458 -5.0430 0.7181 26 6 3.6429 -1.2871 -0.0017 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.4741 -2.4947 0.0000 31 1 4.0148 -4.6539 -0.0014 32 1 8.1939 -2.9040 0.5099 33 1 8.0009 -4.6960 -1.9539 34 1 7.9562 -2.9161 -1.9674 35 1 10.2138 -2.8104 -1.0191 36 1 10.2446 -3.8509 -2.4644 37 1 12.9938 -6.4064 1.5112 38 1 10.2187 -4.1779 1.3491 39 1 10.2500 -5.9500 1.1717 40 1 7.9639 -5.0558 1.7389 41 1 8.0054 -5.9340 0.1906 42 1 4.2063 -0.3658 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892862165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:59 Heat of formation + Delta-G solvation = -64.461848 kcal Electronic energy + Delta-G solvation = -25793.949317 eV Core-core repulsion = 21932.975316 eV Total energy + Delta-G solvation = -3860.974001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24986 -40.18256 -39.12492 -37.52808 -35.94093 -33.14311 -33.11192 -32.58091 -30.48426 -30.09548 -29.62374 -25.94771 -25.11249 -24.39235 -22.62299 -22.24055 -21.57482 -20.14142 -19.37998 -18.29568 -17.72475 -17.08907 -16.74639 -16.35856 -16.01035 -15.91967 -15.52765 -15.01321 -14.86193 -14.18779 -14.10664 -13.72457 -13.62508 -13.42410 -13.19334 -13.08056 -12.84526 -12.70120 -12.67922 -12.52370 -11.59036 -11.32890 -11.14736 -11.00779 -10.79113 -10.75664 -10.50586 -10.48721 -10.34748 -10.24685 -9.98040 -9.90983 -9.80095 -9.71220 -9.51555 -8.52657 -6.77103 -5.85187 -3.28115 -0.17826 0.32161 1.77047 2.42048 2.54790 3.32602 3.36256 3.41610 3.42095 3.43293 3.77306 4.17619 4.23656 4.33105 4.45185 4.54160 4.62349 4.75404 4.87875 5.10841 5.18916 5.26208 5.31234 5.35309 5.46670 5.48080 5.56118 5.66207 5.89528 5.93812 6.16944 6.22742 6.35516 6.44343 6.52371 6.67826 6.72468 6.89168 6.93824 7.22765 7.23287 7.53152 7.72910 7.75185 8.38185 9.14092 9.76652 10.33160 11.24088 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.002344 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.165671 B =11941.928826 C =12279.160475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.402 3.598 3 O -0.450 6.450 4 C -0.239 4.239 5 C 0.172 3.828 6 N -0.494 5.494 7 C 0.189 3.811 8 C -0.180 4.180 9 C 0.508 3.492 10 O -0.498 6.498 11 O -0.350 6.350 12 C 0.100 3.900 13 C -0.147 4.147 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.174 3.826 25 C -0.135 4.135 26 C 0.042 3.958 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.062 0.938 37 H 0.256 0.744 38 H 0.023 0.977 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.825 6.880 -0.618 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.278 3.722 3 O -0.324 6.324 4 C -0.242 4.242 5 C 0.015 3.985 6 N -0.202 5.202 7 C 0.032 3.968 8 C -0.183 4.183 9 C 0.351 3.649 10 O -0.387 6.387 11 O -0.267 6.267 12 C 0.046 3.954 13 C -0.186 4.186 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.048 3.952 25 C -0.175 4.175 26 C 0.016 3.984 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.191 0.809 31 H 0.198 0.802 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.576 6.863 -0.494 25.521 hybrid contribution 1.039 0.015 -0.233 1.065 sum -23.536 6.878 -0.727 24.531 Atomic orbital electron populations 1.22239 0.92849 1.04962 1.05546 1.22331 0.91829 0.86866 0.71143 1.90598 1.71987 1.33986 1.35862 1.21558 0.94650 0.97293 1.10693 1.23591 1.01024 0.86439 0.87493 1.67891 1.09524 1.28763 1.14040 1.23626 0.88955 0.98704 0.85509 1.20307 0.92129 0.95455 1.10453 1.20675 0.87962 0.82801 0.73435 1.90857 1.66575 1.35984 1.45286 1.86575 1.26085 1.31118 1.82922 1.23062 0.72730 1.01158 0.98424 1.22484 0.99942 1.01523 0.94670 1.20863 0.89433 0.91260 0.96257 1.44115 1.48227 1.28036 1.11108 1.19147 1.09553 1.16788 0.93021 0.91532 1.25078 0.97093 1.00400 0.96996 1.70005 1.37447 1.39410 1.07879 0.86331 0.79271 0.83214 0.77711 1.20822 1.21597 1.20934 1.20818 0.85705 1.02367 0.86355 1.22487 1.00789 0.95490 0.98709 1.22064 0.93281 0.98333 0.84702 0.89728 0.88263 0.88257 0.80890 0.80175 0.90067 0.91204 0.92620 0.95989 0.91991 0.93423 0.95934 0.88451 0.92258 0.91290 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.66 10.20 36.01 0.37 -0.29 16 2 C 0.40 3.12 7.23 -30.68 -0.22 2.90 16 3 O -0.45 -5.29 17.16 5.58 0.10 -5.20 16 4 C -0.24 -2.00 5.88 -104.97 -0.62 -2.62 16 5 C 0.17 1.18 10.62 -16.97 -0.18 1.00 16 6 N -0.49 -4.54 10.33 -12.49 -0.13 -4.67 16 7 C 0.19 1.89 10.78 -17.02 -0.18 1.71 16 8 C -0.18 -2.11 5.88 -104.89 -0.62 -2.73 16 9 C 0.51 7.62 7.88 34.61 0.27 7.89 16 10 O -0.50 -8.83 15.67 -19.24 -0.30 -9.13 16 11 O -0.35 -5.47 9.15 -40.50 -0.37 -5.84 16 12 C 0.10 1.78 2.42 -26.69 -0.06 1.72 16 13 C -0.15 -2.67 5.72 -26.61 -0.15 -2.82 16 14 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 15 N -0.59 -14.66 2.99 -172.32 -0.52 -15.17 16 16 C -0.26 -6.90 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 19 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 20 Si 0.91 21.34 29.59 -169.99 -5.03 16.31 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.17 4.04 5.30 -3.71 -0.02 4.03 16 25 C -0.14 -2.54 5.74 -26.61 -0.15 -2.70 16 26 C 0.04 0.45 9.25 -38.35 -0.35 0.10 16 27 H 0.08 0.08 5.63 -51.93 -0.29 -0.22 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.17 0.48 5.93 -52.49 -0.31 0.17 16 31 H 0.18 1.60 7.61 -52.49 -0.40 1.20 16 32 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.27 7.93 -51.93 -0.41 0.85 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 2.51 6.07 -51.93 -0.31 2.19 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.16 1.89 7.40 -52.49 -0.39 1.50 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -32.58 354.36 -7.89 -40.46 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.42 Total: -1.22 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.18 Total: 4.26 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.02 Total: -44.98 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.58 Total: -20.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.58 -7.89 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.997 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds