Wall clock time and date at job start Tue Mar 31 2020 13:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21254 * 119.99566 * 2 1 4 4 C 1.47175 * 119.99993 * 180.02562 * 2 1 3 5 5 C 1.39951 * 120.52007 * 359.94923 * 4 2 1 6 6 N 1.31689 * 120.85355 * 180.02562 * 5 4 2 7 7 C 1.31773 * 122.08100 * 359.97438 * 6 5 4 8 8 C 1.39722 * 120.93598 * 0.02597 * 7 6 5 9 9 C 1.47741 * 120.48445 * 179.97438 * 8 7 6 10 10 O 1.21467 * 119.99963 * 180.02562 * 9 8 7 11 11 O 1.34703 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.45205 * 116.99729 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.45973 * 270.02294 * 12 11 9 14 14 C 1.53194 * 109.31100 * 178.59917 * 13 12 11 15 15 N 1.46927 * 108.76449 * 54.65969 * 14 13 12 16 16 C 1.36933 * 120.63250 * 126.39953 * 15 14 13 17 17 H 1.07999 * 120.00468 * 331.82920 * 16 15 14 18 18 C 1.38814 * 120.00016 * 151.82044 * 16 15 14 19 19 N 1.31618 * 119.99951 * 343.08512 * 18 16 15 20 20 Si 1.86802 * 119.99766 * 163.08369 * 18 16 15 21 21 H 1.48498 * 109.47353 * 60.00474 * 20 18 16 22 22 H 1.48509 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47215 * 300.00125 * 20 18 16 24 24 C 1.46923 * 118.73839 * 306.38305 * 15 14 13 25 25 C 1.53040 * 109.45848 * 149.96933 * 12 11 9 26 26 C 1.39760 * 119.03656 * 359.97228 * 8 7 6 27 27 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47327 * 299.99833 * 1 2 3 29 29 H 1.08999 * 109.47639 * 60.00016 * 1 2 3 30 30 H 1.08001 * 119.57386 * 0.04523 * 5 4 2 31 31 H 1.07998 * 119.53426 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.45657 * 29.99645 * 12 11 9 33 33 H 1.08998 * 109.50466 * 298.56971 * 13 12 11 34 34 H 1.09004 * 109.49776 * 58.66808 * 13 12 11 35 35 H 1.08993 * 109.60283 * 294.86905 * 14 13 12 36 36 H 1.09004 * 109.70303 * 174.50403 * 14 13 12 37 37 H 0.97001 * 119.99774 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.58422 * 293.82031 * 24 15 14 39 39 H 1.08997 * 109.70319 * 173.46363 * 24 15 14 40 40 H 1.08997 * 109.50144 * 301.34058 * 25 12 11 41 41 H 1.08997 * 109.49735 * 61.43520 * 25 12 11 42 42 H 1.07994 * 120.93813 * 179.72291 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5541 -2.4929 0.0000 6 7 2.2059 -3.6372 0.0000 7 6 3.5225 -3.6927 -0.0010 8 6 4.2906 -2.5256 -0.0016 9 6 5.7662 -2.5994 -0.0021 10 8 6.4254 -1.5792 -0.0021 11 8 6.3805 -3.7982 -0.0026 12 6 7.8325 -3.7949 -0.0037 13 6 8.3413 -3.7931 -1.4470 14 6 9.8727 -3.7542 -1.4443 15 7 10.3724 -4.8704 -0.6300 16 6 11.2826 -5.7556 -1.1431 17 1 11.3102 -5.9467 -2.2057 18 6 12.1698 -6.4072 -0.2974 19 7 12.3741 -5.9508 0.9201 20 14 13.0738 -7.9317 -0.8874 21 1 13.8961 -7.5906 -2.0761 22 1 13.9551 -8.4352 0.1967 23 1 12.0887 -8.9814 -1.2516 24 6 9.8773 -5.0187 0.7453 25 6 8.3458 -5.0430 0.7181 26 6 3.6429 -1.2871 -0.0017 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.4741 -2.4947 0.0000 31 1 4.0148 -4.6539 -0.0014 32 1 8.1939 -2.9040 0.5099 33 1 8.0009 -4.6960 -1.9539 34 1 7.9562 -2.9161 -1.9674 35 1 10.2138 -2.8104 -1.0191 36 1 10.2446 -3.8509 -2.4644 37 1 12.9938 -6.4064 1.5112 38 1 10.2187 -4.1779 1.3491 39 1 10.2500 -5.9500 1.1717 40 1 7.9639 -5.0558 1.7389 41 1 8.0054 -5.9340 0.1906 42 1 4.2063 -0.3658 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892862165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:58 Heat of formation + Delta-G solvation = -83.925810 kcal Electronic energy + Delta-G solvation = -25794.793338 eV Core-core repulsion = 21932.975316 eV Total energy + Delta-G solvation = -3861.818022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.17077 -41.25153 -39.89101 -39.09015 -37.41846 -34.67595 -33.90811 -33.65378 -32.15826 -31.49324 -30.54163 -27.40218 -26.27827 -25.33477 -24.09086 -23.80765 -22.76651 -21.15752 -20.96412 -19.25210 -18.92894 -18.53233 -17.64265 -17.41209 -17.23360 -16.85967 -16.74436 -16.20004 -15.79848 -15.60665 -15.43570 -15.02804 -14.95025 -14.67846 -14.48825 -14.43512 -14.22647 -13.78421 -13.31916 -13.07823 -13.03741 -12.97289 -12.77941 -12.58972 -12.53000 -12.26141 -12.06019 -12.00812 -11.84140 -11.48689 -11.31293 -11.19942 -11.11648 -10.66140 -10.56801 -10.53397 -8.77498 -7.91315 -5.37566 -0.89598 -0.50938 1.05636 1.35160 1.44066 1.48939 1.51155 1.57956 2.50370 2.55903 2.81862 3.09118 3.25313 3.39553 3.48016 3.54208 3.57406 3.75040 3.80159 3.84035 3.92596 4.11468 4.23061 4.33787 4.53884 4.61609 4.66289 4.69701 4.71289 4.74140 4.81866 4.87459 4.93420 5.01858 5.18329 5.21463 5.23081 5.31997 5.40826 5.60991 5.66231 6.35024 6.37050 6.45891 6.56168 7.10077 7.78192 8.31287 9.16345 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.002344 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.165671 B =11941.928826 C =12279.160475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.405 3.595 3 O -0.500 6.500 4 C -0.241 4.241 5 C 0.197 3.803 6 N -0.502 5.502 7 C 0.198 3.802 8 C -0.198 4.198 9 C 0.511 3.489 10 O -0.533 6.533 11 O -0.340 6.340 12 C 0.107 3.893 13 C -0.133 4.133 14 C 0.146 3.854 15 N -0.610 5.610 16 C -0.267 4.267 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.179 3.821 25 C -0.120 4.120 26 C 0.030 3.970 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.224 0.776 31 H 0.191 0.809 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.012 0.988 36 H 0.067 0.933 37 H 0.252 0.748 38 H -0.001 1.001 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.434 5.845 -1.379 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.284 3.716 3 O -0.378 6.378 4 C -0.244 4.244 5 C 0.040 3.960 6 N -0.210 5.210 7 C 0.042 3.958 8 C -0.201 4.201 9 C 0.356 3.644 10 O -0.424 6.424 11 O -0.257 6.257 12 C 0.052 3.948 13 C -0.173 4.173 14 C 0.020 3.980 15 N -0.333 5.333 16 C -0.397 4.397 17 H 0.088 0.912 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.799 3.201 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.201 1.201 24 C 0.053 3.947 25 C -0.159 4.159 26 C 0.004 3.996 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.240 0.760 31 H 0.208 0.792 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.230 5.822 -1.272 28.852 hybrid contribution 2.046 0.428 -0.001 2.090 sum -26.184 6.250 -1.274 26.950 Atomic orbital electron populations 1.22312 0.88560 1.07435 1.06510 1.23045 0.93885 0.85568 0.69055 1.90596 1.73350 1.35452 1.38432 1.21805 0.93466 0.98782 1.10356 1.24348 1.02964 0.84784 0.83888 1.68034 1.08770 1.29620 1.14568 1.23757 0.89431 0.98265 0.84362 1.20072 0.89898 0.96566 1.13549 1.21248 0.89233 0.81866 0.72088 1.90845 1.67560 1.36878 1.47133 1.86558 1.24363 1.31613 1.83138 1.22720 0.74251 0.99906 0.97891 1.22288 0.97502 1.02372 0.95098 1.20954 0.91441 0.89745 0.95846 1.44374 1.48372 1.28878 1.11720 1.19485 1.09736 1.17101 0.93338 0.91236 1.25854 0.98245 1.03127 0.97222 1.70164 1.38315 1.40617 1.09000 0.85291 0.78038 0.79755 0.77041 1.20195 1.22044 1.20097 1.20604 0.88641 0.99926 0.85504 1.22190 0.97369 0.96089 1.00288 1.22050 0.94802 0.97360 0.85338 0.86508 0.87155 0.87141 0.75956 0.79215 0.91631 0.90565 0.91368 0.96956 0.91479 0.93878 0.98243 0.91149 0.90207 0.90798 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.48 10.20 71.24 0.73 0.25 16 2 C 0.40 5.51 7.23 28.04 0.20 5.71 16 3 O -0.50 -11.78 17.16 -2.95 -0.05 -11.83 16 4 C -0.24 -3.53 5.88 -20.09 -0.12 -3.65 16 5 C 0.20 1.89 10.62 85.13 0.90 2.79 16 6 N -0.50 -7.47 10.33 -193.42 -2.00 -9.47 16 7 C 0.20 3.56 10.78 85.06 0.92 4.48 16 8 C -0.20 -4.51 5.88 -20.04 -0.12 -4.63 16 9 C 0.51 15.35 7.88 70.33 0.55 15.90 16 10 O -0.53 -19.53 15.67 19.94 0.31 -19.22 16 11 O -0.34 -10.37 9.15 -56.13 -0.51 -10.89 16 12 C 0.11 3.80 2.42 30.62 0.07 3.87 16 13 C -0.13 -4.79 5.72 30.67 0.18 -4.61 16 14 C 0.15 6.24 6.52 86.36 0.56 6.81 16 15 N -0.61 -30.76 2.99 -699.10 -2.09 -32.85 16 16 C -0.27 -14.54 9.58 84.03 0.81 -13.74 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.70 4.92 84.86 0.42 -2.29 16 19 N -0.94 -54.82 11.19 21.65 0.24 -54.57 16 20 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 C 0.18 8.60 5.30 86.36 0.46 9.05 16 25 C -0.12 -4.50 5.74 30.67 0.18 -4.32 16 26 C 0.03 0.65 9.25 23.07 0.21 0.87 16 27 H 0.12 -0.51 5.63 -2.39 -0.01 -0.52 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.22 -0.21 5.93 -2.91 -0.02 -0.23 16 31 H 0.19 2.95 7.61 -2.91 -0.02 2.93 16 32 H 0.07 2.57 7.16 -2.39 -0.02 2.55 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 2.75 7.93 -2.38 -0.02 2.73 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.14 3.55 7.40 -2.91 -0.02 3.53 16 Total: -1.00 -73.80 354.36 4.93 -68.87 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.05 Total: 7.20 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.95 Total: 16.49 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.85 Total: -96.90 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.25 Total: -41.93 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.80 4.93 -68.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892862165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds