Wall clock time and date at job start Tue Mar 31 2020 12:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.50703 * 109.47463 * 240.00168 * 2 1 3 5 5 H 1.07999 * 119.99392 * 240.00588 * 4 2 1 6 6 C 1.37871 * 120.00244 * 59.99860 * 4 2 1 7 7 N 1.31518 * 119.99761 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00292 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47189 * 60.00116 * 8 6 4 10 10 H 1.48504 * 109.47427 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46913 * 300.00034 * 8 6 4 12 12 C 1.50701 * 109.47053 * 120.00084 * 2 1 3 13 13 O 1.21289 * 120.00174 * 120.00240 * 12 2 1 14 14 N 1.34779 * 119.99692 * 299.99964 * 12 2 1 15 15 C 1.39930 * 119.99586 * 184.62602 * 14 12 2 16 16 C 1.38889 * 120.07269 * 324.66691 * 15 14 12 17 17 C 1.38096 * 119.92770 * 179.75018 * 16 15 14 18 18 C 1.38303 * 120.07001 * 0.52233 * 17 16 15 19 19 C 1.38267 * 120.14156 * 359.74998 * 18 17 16 20 20 C 1.50699 * 119.96626 * 179.97438 * 19 18 17 21 21 C 1.53006 * 110.50162 * 90.67847 * 20 19 18 22 22 C 1.54099 * 110.56289 * 327.94211 * 20 19 18 23 23 O 1.46043 * 103.83752 * 241.46295 * 22 20 19 24 24 C 1.33769 * 109.51598 * 359.87876 * 23 22 20 25 25 O 1.21508 * 123.07592 * 180.02562 * 24 23 22 26 26 N 1.34009 * 113.85143 * 0.08168 * 24 23 22 27 27 C 1.38136 * 120.06882 * 359.97438 * 19 18 17 28 28 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47199 * 300.00179 * 1 2 3 30 30 H 1.09008 * 109.47008 * 60.00042 * 1 2 3 31 31 H 0.97004 * 119.99943 * 180.02562 * 7 6 4 32 32 H 0.96990 * 120.00246 * 4.62835 * 14 12 2 33 33 H 1.07996 * 120.03729 * 359.97438 * 16 15 14 34 34 H 1.07992 * 119.96504 * 180.27811 * 17 16 15 35 35 H 1.07995 * 119.93268 * 179.72437 * 18 17 16 36 36 H 1.09004 * 109.46762 * 59.99937 * 21 20 19 37 37 H 1.08993 * 109.47168 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47140 * 300.00499 * 21 20 19 39 39 H 1.08995 * 110.51929 * 0.05347 * 22 20 19 40 40 H 1.09000 * 110.52179 * 122.79365 * 22 20 19 41 41 H 0.97006 * 125.55355 * 180.02562 * 26 24 23 42 42 H 1.07997 * 120.03202 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0078 10 1 1.8261 -0.4206 -5.2205 11 1 3.8065 -1.1208 -4.0080 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7066 -0.2499 2.4546 15 6 2.2508 -0.8502 3.5954 16 6 2.4788 -2.2201 3.6195 17 6 3.0207 -2.8086 4.7451 18 6 3.3264 -2.0372 5.8515 19 6 3.0953 -0.6741 5.8328 20 6 3.4293 0.1627 7.0408 21 6 4.8623 0.6907 6.9474 22 6 3.2361 -0.6526 8.3341 23 8 2.2001 0.0800 9.0574 24 6 1.8276 1.1484 8.3438 25 8 0.9775 1.9319 8.7178 26 7 2.4768 1.2749 7.1784 27 6 2.5587 -0.0784 4.7079 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.7090 1.1614 -3.4844 32 1 1.0951 0.4975 2.5447 33 1 2.2359 -2.8238 2.7576 34 1 3.2024 -3.8730 4.7628 35 1 3.7460 -2.5005 6.7322 36 1 4.9659 1.3040 6.0523 37 1 5.0860 1.2922 7.8284 38 1 5.5560 -0.1485 6.8951 39 1 2.8994 -1.6630 8.1021 40 1 4.1608 -0.6797 8.9105 41 1 2.3409 1.9846 6.5312 42 1 2.3781 0.9862 4.6940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893756620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:13 Heat of formation + Delta-G solvation = -79.428064 kcal Electronic energy + Delta-G solvation = -26334.167580 eV Core-core repulsion = 22472.544595 eV Total energy + Delta-G solvation = -3861.622985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14491 -40.13880 -38.55072 -37.35764 -35.86350 -34.27997 -33.91959 -32.03691 -30.86771 -30.23594 -28.91154 -27.25200 -25.26677 -24.00514 -23.45111 -22.67756 -21.95496 -20.88234 -19.43023 -18.51597 -17.72879 -17.07514 -16.59610 -16.37590 -16.12070 -15.72269 -15.38180 -14.79209 -14.62117 -14.56681 -14.43379 -14.06982 -13.71105 -13.67569 -13.48006 -13.20079 -12.83453 -12.69560 -12.30273 -12.18222 -11.70622 -11.59209 -11.37973 -11.09981 -10.98900 -10.87066 -10.84610 -10.79743 -10.44136 -10.07818 -10.04815 -9.77098 -9.12729 -8.99207 -8.73767 -8.45081 -7.97148 -6.13724 -4.18195 1.22070 1.29794 2.41428 2.49563 3.15058 3.29101 3.32027 3.32861 3.36280 3.49788 3.66190 3.82933 4.06699 4.35973 4.38387 4.66771 4.80432 4.85985 4.93481 5.03493 5.18793 5.19858 5.23367 5.36375 5.47344 5.61406 5.61802 5.80516 6.00983 6.21653 6.40280 6.45067 6.47904 6.50565 6.63625 6.67933 6.76860 6.97033 7.14635 7.32082 7.61604 7.79539 7.82675 7.95905 8.20834 8.87411 8.91851 9.47965 10.93792 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.002783 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.055240 B =10060.475571 C =10622.939020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.522 6.522 14 N -0.690 5.690 15 C 0.171 3.829 16 C -0.118 4.118 17 C -0.094 4.094 18 C -0.142 4.142 19 C -0.084 4.084 20 C 0.169 3.831 21 C -0.150 4.150 22 C 0.046 3.954 23 O -0.328 6.328 24 C 0.649 3.351 25 O -0.525 6.525 26 N -0.723 5.723 27 C -0.139 4.139 28 H 0.033 0.967 29 H 0.012 0.988 30 H 0.096 0.904 31 H 0.263 0.737 32 H 0.408 0.592 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.435 0.565 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -1.902 19.577 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.074 0.926 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.396 6.396 14 N -0.335 5.335 15 C 0.075 3.925 16 C -0.139 4.139 17 C -0.113 4.113 18 C -0.162 4.162 19 C -0.085 4.085 20 C 0.081 3.919 21 C -0.208 4.208 22 C -0.028 4.028 23 O -0.238 6.238 24 C 0.401 3.599 25 O -0.410 6.410 26 N -0.395 5.395 27 C -0.160 4.160 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.244 0.756 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.279 0.721 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.944 -2.263 19.792 20.789 hybrid contribution 0.049 0.301 -1.323 1.358 sum 5.993 -1.963 18.469 19.516 Atomic orbital electron populations 1.21783 0.96237 1.00086 1.01219 1.18910 0.94309 0.96949 0.88706 0.92592 1.21062 1.31510 1.13047 0.88870 0.90728 1.24945 0.94958 0.95009 0.99181 1.69852 1.36756 1.22922 1.23885 0.86476 0.79301 0.79715 0.81490 1.20125 1.21294 1.20124 1.22348 0.78147 0.84310 0.84062 1.90532 1.36998 1.25807 1.86234 1.44177 1.47983 1.36653 1.04698 1.17907 0.95617 0.91897 0.87070 1.21505 0.99793 0.93517 0.99064 1.21013 0.97921 0.99902 0.92462 1.20784 1.03635 0.92580 0.99161 1.19342 1.01417 0.93733 0.94030 1.20385 0.91397 0.86383 0.93708 1.22156 0.92506 1.02529 1.03652 1.24753 0.91483 0.96635 0.89955 1.87312 1.54359 1.37661 1.44501 1.18446 0.80825 0.80739 0.79868 1.91086 1.33367 1.43178 1.73403 1.46127 1.41834 1.29657 1.21906 1.20539 1.03021 0.99195 0.93264 0.94764 0.96850 0.88514 0.92729 0.75574 0.83876 0.85541 0.85904 0.90709 0.91233 0.90035 0.86697 0.87077 0.72142 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.86 37.15 0.33 -2.60 16 2 C 0.03 0.76 2.65 -92.92 -0.25 0.51 16 3 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.51 -13.72 8.37 -34.44 -0.29 -14.01 16 5 H 0.07 2.12 6.75 -52.49 -0.35 1.77 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.52 10.98 6.99 -10.98 -0.08 10.90 16 13 O -0.52 -12.41 12.91 5.55 0.07 -12.34 16 14 N -0.69 -11.25 5.26 -9.86 -0.05 -11.30 16 15 C 0.17 2.54 6.29 -83.69 -0.53 2.01 16 16 C -0.12 -1.78 8.70 -39.39 -0.34 -2.12 16 17 C -0.09 -1.08 10.04 -39.61 -0.40 -1.47 16 18 C -0.14 -1.31 8.76 -39.55 -0.35 -1.66 16 19 C -0.08 -0.80 4.88 -104.65 -0.51 -1.31 16 20 C 0.17 1.26 1.20 -132.08 -0.16 1.10 16 21 C -0.15 -0.85 8.73 37.16 0.32 -0.53 16 22 C 0.05 0.30 7.09 37.73 0.27 0.57 16 23 O -0.33 -3.57 11.10 -37.83 -0.42 -3.99 16 24 C 0.65 8.00 9.16 53.71 0.49 8.49 16 25 O -0.53 -8.59 18.04 -19.11 -0.34 -8.94 16 26 N -0.72 -6.52 5.16 -53.09 -0.27 -6.79 16 27 C -0.14 -1.62 9.27 -39.39 -0.36 -1.99 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.23 7.47 -51.93 -0.39 -0.16 16 30 H 0.10 2.34 6.07 -51.92 -0.32 2.02 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.41 5.64 8.11 -40.82 -0.33 5.31 16 33 H 0.14 2.51 6.25 -52.49 -0.33 2.18 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 0.72 6.53 -52.49 -0.34 0.38 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.12 0.63 5.84 -51.93 -0.30 0.32 16 40 H 0.11 0.41 7.73 -51.93 -0.40 0.00 16 41 H 0.43 3.38 8.07 -40.82 -0.33 3.05 16 42 H 0.12 1.18 6.98 -52.49 -0.37 0.82 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -33.20 347.82 -7.24 -40.45 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.13 Total: 5.82 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.94 Total: -0.59 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.30 Total: -41.76 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.69 Total: -25.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.20 -7.24 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893756620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.983 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds