Wall clock time and date at job start Tue Mar 31 2020 12:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47504 * 2 1 4 4 C 1.50706 * 109.46997 * 240.00102 * 2 1 3 5 5 H 1.07999 * 119.99857 * 239.99956 * 4 2 1 6 6 C 1.37871 * 120.00219 * 60.00142 * 4 2 1 7 7 N 1.31521 * 119.99668 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00190 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47167 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.46916 * 210.00035 * 8 6 4 11 11 H 1.48499 * 109.46916 * 329.99580 * 8 6 4 12 12 C 1.50702 * 109.47036 * 120.00013 * 2 1 3 13 13 O 1.21289 * 119.99738 * 120.00121 * 12 2 1 14 14 N 1.34776 * 120.00293 * 299.99934 * 12 2 1 15 15 C 1.39921 * 120.00026 * 184.61706 * 14 12 2 16 16 C 1.38891 * 120.07097 * 324.89195 * 15 14 12 17 17 C 1.38090 * 119.92774 * 180.02562 * 16 15 14 18 18 C 1.38305 * 120.07322 * 359.72171 * 17 16 15 19 19 C 1.38264 * 120.13620 * 0.55056 * 18 17 16 20 20 C 1.50701 * 119.95966 * 179.72330 * 19 18 17 21 21 C 1.52995 * 110.62126 * 271.09417 * 20 19 18 22 22 C 1.54086 * 110.45881 * 33.98685 * 20 19 18 23 23 O 1.45703 * 104.01338 * 118.88780 * 22 20 19 24 24 C 1.33768 * 109.47459 * 359.75963 * 23 22 20 25 25 O 1.21508 * 123.07285 * 179.97438 * 24 23 22 26 26 N 1.34009 * 113.85982 * 359.97438 * 24 23 22 27 27 C 1.38131 * 120.07063 * 359.45425 * 19 18 17 28 28 H 1.09004 * 109.47406 * 300.00072 * 1 2 3 29 29 H 1.09005 * 109.47184 * 60.00038 * 1 2 3 30 30 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99485 * 180.02562 * 7 6 4 32 32 H 0.97004 * 119.99684 * 4.61310 * 14 12 2 33 33 H 1.07994 * 120.03556 * 0.04334 * 16 15 14 34 34 H 1.08002 * 119.96446 * 180.02562 * 17 16 15 35 35 H 1.07990 * 119.93261 * 180.27780 * 18 17 16 36 36 H 1.08997 * 109.47521 * 297.88268 * 21 20 19 37 37 H 1.09001 * 109.47339 * 57.88328 * 21 20 19 38 38 H 1.09002 * 109.46757 * 177.87957 * 21 20 19 39 39 H 1.09005 * 110.73055 * 0.15700 * 22 20 19 40 40 H 1.08994 * 110.43298 * 237.48004 * 22 20 19 41 41 H 0.96992 * 125.56516 * 179.97438 * 26 24 23 42 42 H 1.08005 * 120.03292 * 180.24951 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3426 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.2507 -0.8504 3.5954 16 6 2.4828 -2.2196 3.6177 17 6 3.0193 -2.8092 4.7453 18 6 3.3308 -2.0370 5.8496 19 6 3.0957 -0.6746 5.8325 20 6 3.4308 0.1621 7.0403 21 6 2.2432 0.2182 8.0033 22 6 4.6809 -0.3928 7.7499 23 8 5.6416 0.7003 7.6784 24 6 5.0905 1.7372 7.0378 25 8 5.6776 2.7825 6.8401 26 7 3.8316 1.5180 6.6341 27 6 2.5592 -0.0788 4.7077 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7081 1.1609 -3.4844 32 1 1.0953 0.4977 2.5447 33 1 2.2443 -2.8224 2.7540 34 1 3.2005 -3.8737 4.7631 35 1 3.7544 -2.4997 6.7285 36 1 1.3960 0.6927 7.5082 37 1 1.9694 -0.7937 8.3019 38 1 2.5183 0.7956 8.8860 39 1 5.0622 -1.2712 7.2291 40 1 4.4534 -0.6343 8.7881 41 1 3.2739 2.1517 6.1565 42 1 2.3795 0.9861 4.6937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893756622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:20 Heat of formation + Delta-G solvation = -79.330540 kcal Electronic energy + Delta-G solvation = -26379.636049 eV Core-core repulsion = 22518.017293 eV Total energy + Delta-G solvation = -3861.618756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14151 -40.13378 -38.53899 -37.33848 -35.85845 -34.27379 -33.91104 -32.02096 -30.85746 -30.24015 -28.89922 -27.25628 -25.26127 -24.00462 -23.44840 -22.66628 -21.95141 -20.87245 -19.43194 -18.49686 -17.71686 -17.04585 -16.60106 -16.36256 -16.11833 -15.70807 -15.33757 -14.83000 -14.64438 -14.54869 -14.42528 -13.99593 -13.74129 -13.64673 -13.47032 -13.19279 -12.81645 -12.70072 -12.46648 -12.10755 -11.67746 -11.61530 -11.34538 -11.10894 -10.96591 -10.85994 -10.82669 -10.75421 -10.44475 -10.06346 -10.03088 -9.76493 -9.10646 -8.98774 -8.73024 -8.44239 -7.96464 -6.12777 -4.16960 1.22553 1.30119 2.43939 2.53228 3.18267 3.28271 3.33276 3.34704 3.39323 3.48235 3.69704 3.82979 4.07596 4.34759 4.39701 4.68792 4.82204 4.85815 4.93863 5.02988 5.16541 5.20856 5.23151 5.36360 5.47863 5.56808 5.62228 5.80697 6.01582 6.22246 6.40319 6.45751 6.50004 6.50517 6.63894 6.67948 6.76812 7.00128 7.15186 7.32689 7.61859 7.80390 7.85797 7.96745 8.21760 8.88759 8.93220 9.49260 10.94797 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.002892 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.016513 B = 9680.123462 C =10078.474705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.057 0.943 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.520 3.480 13 O -0.522 6.522 14 N -0.689 5.689 15 C 0.171 3.829 16 C -0.119 4.119 17 C -0.095 4.095 18 C -0.142 4.142 19 C -0.084 4.084 20 C 0.169 3.831 21 C -0.149 4.149 22 C 0.046 3.954 23 O -0.327 6.327 24 C 0.649 3.351 25 O -0.524 6.524 26 N -0.724 5.724 27 C -0.139 4.139 28 H 0.012 0.988 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.408 0.592 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.435 0.565 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -3.202 22.488 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.074 0.926 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.395 6.395 14 N -0.335 5.335 15 C 0.075 3.925 16 C -0.139 4.139 17 C -0.113 4.113 18 C -0.161 4.161 19 C -0.085 4.085 20 C 0.081 3.919 21 C -0.207 4.207 22 C -0.029 4.029 23 O -0.237 6.237 24 C 0.401 3.599 25 O -0.409 6.409 26 N -0.396 5.396 27 C -0.160 4.160 28 H 0.031 0.969 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.278 0.722 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.109 -3.351 22.233 22.485 hybrid contribution -0.477 0.215 -1.122 1.238 sum -0.586 -3.136 21.112 21.351 Atomic orbital electron populations 1.21779 0.96236 1.00041 1.01186 1.18922 0.94309 0.96993 0.88730 0.92564 1.21103 1.31408 1.13000 0.88852 0.90680 1.24946 0.94982 0.95004 0.99193 1.69863 1.36847 1.22956 1.23759 0.86419 0.79480 0.79247 0.81912 1.20594 1.21204 1.19684 1.22351 0.78156 0.84321 0.84072 1.90535 1.36915 1.25845 1.86213 1.44167 1.48000 1.36619 1.04705 1.17909 0.95619 0.91884 0.87098 1.21509 0.99847 0.93536 0.99025 1.21015 0.97932 0.99890 0.92486 1.20773 1.03485 0.92656 0.99217 1.19344 1.01472 0.93832 0.93890 1.20390 0.95939 0.82182 0.93355 1.22138 0.96568 1.03848 0.98129 1.24670 0.85516 0.89579 1.03107 1.87267 1.39859 1.24739 1.71839 1.18449 0.81090 0.83440 0.76912 1.91090 1.65748 1.23722 1.60297 1.46118 1.15014 1.16771 1.61687 1.20542 1.03003 0.99058 0.93423 0.96895 0.88510 0.94779 0.92806 0.75608 0.83845 0.85549 0.85928 0.90793 0.90051 0.91250 0.86781 0.87161 0.72154 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.86 37.16 0.33 -2.57 16 2 C 0.03 0.74 2.65 -92.92 -0.25 0.50 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.51 -13.82 8.37 -34.44 -0.29 -14.11 16 5 H 0.08 2.16 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.52 11.10 6.99 -10.98 -0.08 11.02 16 13 O -0.52 -12.60 12.90 5.55 0.07 -12.53 16 14 N -0.69 -11.26 5.26 -9.86 -0.05 -11.31 16 15 C 0.17 2.54 6.30 -83.70 -0.53 2.01 16 16 C -0.12 -1.79 8.70 -39.39 -0.34 -2.13 16 17 C -0.09 -1.08 10.04 -39.61 -0.40 -1.48 16 18 C -0.14 -1.31 8.74 -39.55 -0.35 -1.65 16 19 C -0.08 -0.81 4.87 -104.65 -0.51 -1.32 16 20 C 0.17 1.26 1.20 -132.08 -0.16 1.10 16 21 C -0.15 -0.74 8.75 37.16 0.33 -0.41 16 22 C 0.05 0.32 7.04 37.72 0.27 0.59 16 23 O -0.33 -3.78 11.09 -37.82 -0.42 -4.20 16 24 C 0.65 8.47 9.16 53.71 0.49 8.97 16 25 O -0.52 -9.02 18.04 -19.12 -0.34 -9.36 16 26 N -0.72 -6.85 5.12 -53.09 -0.27 -7.12 16 27 C -0.14 -1.63 9.26 -39.39 -0.36 -1.99 16 28 H 0.01 0.22 7.47 -51.93 -0.39 -0.17 16 29 H 0.10 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.41 5.53 8.11 -40.82 -0.33 5.19 16 33 H 0.14 2.52 6.23 -52.49 -0.33 2.19 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 0.72 6.66 -52.49 -0.35 0.37 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.70 5.98 -51.93 -0.31 0.39 16 40 H 0.11 0.41 7.73 -51.93 -0.40 0.01 16 41 H 0.43 3.54 8.04 -40.82 -0.33 3.21 16 42 H 0.12 1.19 6.91 -52.48 -0.36 0.83 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -33.89 347.85 -7.25 -41.14 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.14 Total: 5.58 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.94 Total: 0.05 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.30 Total: -42.24 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.69 Total: -26.09 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.89 -7.25 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893756622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.192 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds