Wall clock time and date at job start Tue Mar 31 2020 12:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.50699 * 109.47142 * 120.00105 * 2 1 3 5 5 H 1.08000 * 120.00390 * 120.00044 * 4 2 1 6 6 C 1.37880 * 120.00099 * 299.99825 * 4 2 1 7 7 N 1.31514 * 119.99754 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47473 * 89.99877 * 8 6 4 10 10 H 1.48497 * 109.47418 * 210.00017 * 8 6 4 11 11 H 1.48505 * 109.47112 * 329.99880 * 8 6 4 12 12 C 1.50701 * 109.46731 * 239.99768 * 2 1 3 13 13 O 1.21288 * 119.99943 * 239.99550 * 12 2 1 14 14 N 1.34778 * 119.99841 * 60.00518 * 12 2 1 15 15 C 1.39924 * 119.99602 * 184.62876 * 14 12 2 16 16 C 1.38888 * 120.07359 * 324.92827 * 15 14 12 17 17 C 1.38095 * 119.93107 * 179.97438 * 16 15 14 18 18 C 1.38305 * 120.06800 * 359.75154 * 17 16 15 19 19 C 1.38266 * 120.14182 * 0.50562 * 18 17 16 20 20 C 1.50695 * 119.96200 * 179.76916 * 19 18 17 21 21 C 1.52999 * 110.62292 * 271.09053 * 20 19 18 22 22 C 1.54091 * 110.45752 * 33.98209 * 20 19 18 23 23 O 1.45699 * 104.00856 * 118.89480 * 22 20 19 24 24 C 1.33771 * 109.48111 * 359.75343 * 23 22 20 25 25 O 1.21509 * 123.07428 * 179.97438 * 24 23 22 26 26 N 1.34009 * 113.85196 * 0.02562 * 24 23 22 27 27 C 1.38131 * 120.06888 * 359.49127 * 19 18 17 28 28 H 1.09000 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46937 * 299.99764 * 1 2 3 30 30 H 1.08997 * 109.47585 * 59.99861 * 1 2 3 31 31 H 0.96995 * 120.00072 * 179.97438 * 7 6 4 32 32 H 0.96995 * 120.00409 * 4.62354 * 14 12 2 33 33 H 1.08002 * 120.03764 * 0.02562 * 16 15 14 34 34 H 1.07996 * 119.96617 * 180.02562 * 17 16 15 35 35 H 1.07999 * 119.92931 * 180.27463 * 18 17 16 36 36 H 1.09005 * 109.47101 * 297.88341 * 21 20 19 37 37 H 1.09002 * 109.46613 * 57.88178 * 21 20 19 38 38 H 1.08998 * 109.47557 * 177.88083 * 21 20 19 39 39 H 1.08994 * 110.73079 * 0.15537 * 22 20 19 40 40 H 1.09004 * 110.42754 * 237.48085 * 22 20 19 41 41 H 0.97002 * 125.55579 * 180.02562 * 26 24 23 42 42 H 1.07997 * 120.03612 * 180.23535 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9490 5.1123 11 1 2.4880 -2.5654 3.7122 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.0911 -0.9632 -3.5954 16 6 3.3040 -1.6395 -3.6175 17 6 3.6802 -2.3429 -4.7447 18 6 2.8483 -2.3786 -5.8490 19 6 1.6426 -1.7021 -5.8321 20 6 0.7416 -1.7395 -7.0395 21 6 1.0848 -0.6020 -8.0034 22 6 0.8471 -3.1037 -7.7481 23 8 -0.5040 -3.6442 -7.6758 24 6 -1.2972 -2.7780 -7.0356 25 8 -2.4785 -2.9823 -6.8374 26 7 -0.6702 -1.6639 -6.6337 27 6 1.2605 -0.9967 -4.7076 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7090 1.1614 3.4844 32 1 1.2058 0.5758 -2.5448 33 1 3.9519 -1.6159 -2.7537 34 1 4.6231 -2.8693 -4.7624 35 1 3.1428 -2.9331 -6.7278 36 1 0.9206 0.3554 -7.5088 37 1 2.1300 -0.6821 -8.3023 38 1 0.4485 -0.6690 -8.8858 39 1 1.5480 -3.7559 -7.2272 40 1 1.1504 -2.9705 -8.7867 41 1 -1.0812 -0.9265 -6.1559 42 1 0.3169 -0.4716 -4.6936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893756623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:23 Heat of formation + Delta-G solvation = -103.806362 kcal Electronic energy + Delta-G solvation = -26432.097833 eV Core-core repulsion = 22569.417726 eV Total energy + Delta-G solvation = -3862.680107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.93868 -41.43534 -39.74590 -38.38535 -36.75565 -35.85037 -35.53821 -32.99840 -32.49219 -31.21785 -29.88144 -27.82170 -27.25531 -25.24836 -24.47305 -23.79218 -22.85988 -22.04383 -20.85039 -19.36177 -18.79097 -18.26702 -18.03306 -17.75115 -17.14918 -16.88233 -16.50590 -16.38461 -15.94893 -15.51252 -15.28818 -15.19436 -14.92663 -14.55692 -14.42464 -14.35116 -14.19851 -13.66444 -13.42396 -13.21128 -13.00582 -12.94258 -12.71040 -12.60075 -12.38461 -12.27926 -12.19233 -12.05906 -11.85491 -11.67699 -11.27511 -11.08996 -10.66517 -10.55867 -10.35506 -9.80988 -9.09320 -8.19592 -6.30130 0.27585 0.35031 1.38574 1.39993 1.51174 1.56045 1.67293 1.79187 2.18557 2.44226 2.51804 2.78242 3.10409 3.11411 3.34453 3.83264 3.91475 4.04088 4.18336 4.23376 4.34077 4.47809 4.51557 4.57240 4.66314 4.68120 4.80141 4.86917 4.90057 4.93347 4.99522 5.26892 5.34436 5.38036 5.44163 5.51485 5.58984 5.69920 5.72929 5.87272 6.06581 6.14702 6.18661 6.58027 6.78645 6.96652 7.29882 7.41199 8.86342 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.002955 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.570307 B = 9474.672951 C =10057.987970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.027 3.973 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.522 3.478 13 O -0.560 6.560 14 N -0.672 5.672 15 C 0.135 3.865 16 C -0.147 4.147 17 C -0.096 4.096 18 C -0.122 4.122 19 C -0.078 4.078 20 C 0.172 3.828 21 C -0.145 4.145 22 C 0.039 3.961 23 O -0.343 6.343 24 C 0.646 3.354 25 O -0.578 6.578 26 N -0.713 5.713 27 C -0.135 4.135 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.421 0.579 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.152 0.848 41 H 0.440 0.560 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -0.247 -25.514 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.006 3.994 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.313 3.687 13 O -0.437 6.437 14 N -0.318 5.318 15 C 0.041 3.959 16 C -0.168 4.168 17 C -0.115 4.115 18 C -0.140 4.140 19 C -0.080 4.080 20 C 0.086 3.914 21 C -0.203 4.203 22 C -0.034 4.034 23 O -0.252 6.252 24 C 0.399 3.601 25 O -0.467 6.467 26 N -0.385 5.385 27 C -0.156 4.156 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.259 0.741 33 H 0.125 0.875 34 H 0.165 0.835 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.284 0.716 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.427 -1.273 -25.310 25.573 hybrid contribution -0.148 0.515 1.913 1.987 sum 3.279 -0.758 -23.397 23.638 Atomic orbital electron populations 1.21579 0.94978 0.99377 1.01977 1.18819 0.95308 0.96177 0.89076 0.93417 1.21266 1.31832 1.12858 0.91005 0.93179 1.25576 0.95110 0.95716 1.01416 1.69933 1.37010 1.23500 1.24433 0.85599 0.78452 0.78753 0.79130 1.19832 1.20034 1.20450 1.21796 0.78017 0.83771 0.85166 1.90516 1.38058 1.28098 1.87022 1.43681 1.57201 1.27040 1.03890 1.18099 0.93743 0.96653 0.87403 1.21418 0.95615 1.00250 0.99519 1.21272 1.00755 0.97589 0.91874 1.21247 0.93235 0.99929 0.99616 1.19657 0.95991 0.98466 0.93890 1.20611 0.79503 0.98527 0.92799 1.22175 1.04633 0.95928 0.97561 1.25158 0.80259 0.92151 1.05838 1.87235 1.23448 1.43201 1.71350 1.18598 0.84870 0.79892 0.76774 1.91041 1.13942 1.79285 1.62432 1.46148 1.10638 1.20901 1.60773 1.20717 0.99014 1.02982 0.92881 0.96131 0.90854 0.92783 0.92509 0.74145 0.87502 0.83514 0.81316 0.90861 0.87806 0.90168 0.85589 0.83012 0.71581 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.87 71.98 0.64 -4.78 16 2 C 0.03 1.34 2.64 -12.29 -0.03 1.30 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.53 -30.24 8.37 25.60 0.21 -30.02 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.34 11.32 21.45 0.24 -50.09 16 8 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.52 23.19 6.99 87.66 0.61 23.80 16 13 O -0.56 -28.62 12.89 -3.05 -0.04 -28.66 16 14 N -0.67 -22.21 5.19 -303.50 -1.58 -23.79 16 15 C 0.14 3.98 6.30 38.15 0.24 4.22 16 16 C -0.15 -4.49 8.70 22.39 0.19 -4.29 16 17 C -0.10 -2.00 10.04 22.25 0.22 -1.77 16 18 C -0.12 -1.71 8.74 22.29 0.19 -1.51 16 19 C -0.08 -1.22 4.87 -19.88 -0.10 -1.32 16 20 C 0.17 1.85 1.20 3.11 0.00 1.85 16 21 C -0.15 -0.71 8.75 71.98 0.63 -0.08 16 22 C 0.04 0.36 7.04 72.35 0.51 0.86 16 23 O -0.34 -7.02 11.09 -47.32 -0.52 -7.54 16 24 C 0.65 15.93 9.16 129.91 1.19 17.12 16 25 O -0.58 -19.97 18.04 19.65 0.35 -19.62 16 26 N -0.71 -11.73 5.12 -553.60 -2.84 -14.57 16 27 C -0.14 -2.89 9.26 22.39 0.21 -2.68 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 30 H 0.05 1.91 7.67 -2.39 -0.02 1.89 16 31 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.42 11.17 8.39 -92.71 -0.78 10.39 16 33 H 0.11 4.02 6.22 -2.91 -0.02 4.00 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.17 0.84 6.66 -2.91 -0.02 0.82 16 36 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.13 0.84 5.98 -2.39 -0.01 0.83 16 40 H 0.15 0.17 7.73 -2.38 -0.02 0.15 16 41 H 0.44 6.27 8.04 -92.71 -0.75 5.52 16 42 H 0.14 2.39 6.91 -2.91 -0.02 2.37 16 Total: -1.00 -79.33 348.26 2.39 -76.94 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.44 Total: 16.47 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.18 Total: 4.32 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -4.17 Total: -88.45 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.21 Total: -55.82 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -79.33 2.39 -76.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893756623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.868 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds