Wall clock time and date at job start Tue Mar 31 2020 13:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47513 * 2 1 4 4 C 1.34229 * 117.00530 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99491 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00382 * 180.02562 * 4 3 2 7 7 C 1.50697 * 112.84858 * 309.66486 * 6 4 3 8 8 O 1.21273 * 120.00134 * 229.07610 * 7 6 4 9 9 N 1.34775 * 120.00063 * 48.80796 * 7 6 4 10 10 C 1.39273 * 120.00466 * 175.33233 * 9 7 6 11 11 C 1.39667 * 119.57736 * 185.31134 * 10 9 7 12 12 C 1.38657 * 119.49479 * 179.76474 * 11 10 9 13 13 C 1.38339 * 118.66730 * 0.49811 * 12 11 10 14 14 C 1.40577 * 119.13520 * 359.74325 * 13 12 11 15 15 C 1.41339 * 119.79174 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99999 * 5.26247 * 15 14 13 17 17 C 1.40023 * 119.99871 * 185.26448 * 15 14 13 18 18 N 1.30740 * 120.00160 * 354.96155 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 174.96695 * 17 15 14 20 20 H 1.48498 * 109.47023 * 94.99529 * 19 17 15 21 21 H 1.48498 * 109.46991 * 214.99591 * 19 17 15 22 22 H 1.48503 * 109.46886 * 334.99613 * 19 17 15 23 23 N 1.31910 * 119.56937 * 5.57575 * 10 9 7 24 24 C 1.53779 * 113.69221 * 80.93566 * 6 4 3 25 25 C 1.53776 * 87.08246 * 89.12732 * 24 6 4 26 26 C 1.53780 * 113.61580 * 178.47073 * 6 4 3 27 27 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47007 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.46718 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47007 * 239.99838 * 2 1 3 31 31 H 1.09004 * 109.47187 * 120.00054 * 2 1 3 32 32 H 0.97004 * 120.00002 * 355.32756 * 9 7 6 33 33 H 1.08002 * 120.25230 * 0.02562 * 11 10 9 34 34 H 1.08005 * 120.66625 * 180.22047 * 12 11 10 35 35 H 1.08010 * 120.43478 * 179.77147 * 13 12 11 36 36 H 0.97002 * 120.00478 * 180.02562 * 18 17 15 37 37 H 1.08995 * 113.61548 * 203.67554 * 24 6 4 38 38 H 1.09002 * 113.60974 * 334.57737 * 24 6 4 39 39 H 1.09005 * 113.61689 * 270.88407 * 25 24 6 40 40 H 1.08997 * 113.69695 * 139.99373 * 25 24 6 41 41 H 1.09011 * 113.61361 * 25.34532 * 26 6 4 42 42 H 1.08992 * 113.61638 * 156.16371 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 6 3.3258 3.8172 -1.0678 8 8 4.0509 4.4585 -1.7984 9 7 1.9880 3.8872 -1.2155 10 6 1.4345 4.7727 -2.1370 11 6 0.0472 4.9192 -2.2048 12 6 -0.5019 5.8049 -3.1196 13 6 0.3481 6.5133 -3.9498 14 6 1.7356 6.3178 -3.8365 15 6 2.6168 7.0347 -4.6775 16 1 2.2308 7.7914 -5.3444 17 6 3.9902 6.7639 -4.6458 18 7 4.4701 5.9195 -3.7706 19 14 5.1369 7.6092 -5.8542 20 1 5.7207 8.8182 -5.2197 21 1 6.2268 6.6763 -6.2378 22 1 4.3748 8.0050 -7.0657 23 7 2.2271 5.4583 -2.9382 24 6 3.9516 3.5927 1.3920 25 6 5.3416 2.9604 1.5727 26 6 5.4579 2.9681 0.0393 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.4106 3.3209 -0.6799 33 1 -0.5929 4.3501 -1.5468 34 1 -1.5720 5.9356 -3.1857 35 1 -0.0490 7.2080 -4.6753 36 1 5.4216 5.7322 -3.7484 37 1 3.9681 4.6821 1.3610 38 1 3.2004 3.1991 2.0767 39 1 5.3134 1.9594 2.0034 40 1 6.0592 3.6142 2.0683 41 1 5.9229 2.0702 -0.3679 42 1 5.8863 3.8861 -0.3628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893866582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:02 Heat of formation + Delta-G solvation = -42.174095 kcal Electronic energy + Delta-G solvation = -27567.231202 eV Core-core repulsion = 23707.223671 eV Total energy + Delta-G solvation = -3860.007532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28912 -39.31026 -38.28275 -37.00674 -36.14328 -34.11446 -33.02082 -31.86419 -30.32315 -29.34985 -27.45451 -25.72825 -25.44876 -23.75147 -22.31644 -21.93836 -21.25604 -19.90113 -19.28697 -18.12967 -17.25117 -16.89247 -16.58711 -16.05840 -15.69383 -14.69766 -14.67723 -14.44415 -14.25253 -14.18610 -13.84851 -13.61531 -13.06478 -12.95471 -12.79859 -12.40012 -12.33278 -12.01508 -12.00848 -11.82477 -11.66399 -11.22483 -11.16176 -10.99519 -10.91672 -10.65879 -10.64853 -10.47186 -10.44262 -10.33007 -9.93896 -9.66314 -9.02467 -8.98033 -7.96796 -7.23322 -6.96286 -6.15384 -4.39737 2.04543 2.42864 2.77631 3.06290 3.17905 3.20176 3.27153 3.65858 3.79157 4.06616 4.29046 4.47969 4.67455 4.76296 4.79441 4.84842 4.93748 5.05698 5.12050 5.41243 5.57211 5.62008 5.64518 5.79669 5.82978 5.86274 5.95093 6.03533 6.11907 6.12364 6.28063 6.44092 6.50377 6.68212 6.84434 6.86024 7.23680 7.55664 7.61916 7.66524 7.81426 8.06369 8.19181 8.47122 8.73113 9.04268 9.18868 10.23785 10.47846 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004960 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.202436 B = 5643.699927 C = 7078.813704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.495 3.505 5 O -0.499 6.499 6 C -0.114 4.114 7 C 0.491 3.509 8 O -0.394 6.394 9 N -0.657 5.657 10 C 0.371 3.629 11 C -0.353 4.353 12 C -0.036 4.036 13 C -0.304 4.304 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.082 0.918 17 C 0.059 3.941 18 N -0.659 5.659 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.475 5.475 24 C -0.106 4.106 25 C -0.144 4.144 26 C -0.095 4.095 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.272 0.728 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 -8.977 10.776 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.338 3.662 5 O -0.386 6.386 6 C -0.119 4.119 7 C 0.271 3.729 8 O -0.257 6.257 9 N -0.306 5.306 10 C 0.133 3.867 11 C -0.379 4.379 12 C -0.061 4.061 13 C -0.327 4.327 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.100 0.900 17 C -0.169 4.169 18 N -0.278 5.278 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.194 5.194 24 C -0.144 4.144 25 C -0.181 4.181 26 C -0.133 4.133 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.241 0.759 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.004 -9.034 10.372 13.754 hybrid contribution -0.921 -0.164 -0.316 0.987 sum -0.924 -9.198 10.056 13.659 Atomic orbital electron populations 1.21833 0.92358 1.02994 1.03994 1.23063 0.95569 0.79795 1.02572 1.86402 1.24224 1.32826 1.83859 1.22695 0.80570 0.91078 0.71893 1.90633 1.60423 1.42407 1.45089 1.22217 0.99902 0.90001 0.99808 1.19826 0.83421 0.84517 0.85149 1.91164 1.58112 1.38285 1.38111 1.43468 1.06931 1.40372 1.39813 1.18624 0.88337 0.90101 0.89647 1.20495 0.93031 1.13184 1.11204 1.20561 0.97219 0.94281 0.93998 1.21629 0.95020 1.09168 1.06910 1.18381 0.89202 0.88675 0.89104 1.19575 0.91160 1.17075 1.17840 0.89951 1.26158 0.99201 0.95505 0.96080 1.70308 1.13712 1.20002 1.23786 0.86506 0.80250 0.79753 0.81490 1.19716 1.20272 1.18709 1.68686 1.33921 1.10166 1.06620 1.22859 0.98369 1.01661 0.91474 1.22933 0.96862 1.01296 0.96998 1.22819 0.89548 1.05009 0.95918 0.90257 0.91325 0.90965 0.91114 0.91212 0.75861 0.89039 0.88609 0.88559 0.91628 0.87784 0.90376 0.89926 0.90272 0.89790 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -4.88 7.99 -39.26 -0.31 -5.20 16 4 C 0.50 7.67 6.73 36.00 0.24 7.91 16 5 O -0.50 -8.37 15.58 -18.75 -0.29 -8.66 16 6 C -0.11 -1.81 1.22 -156.00 -0.19 -2.00 16 7 C 0.49 10.11 6.88 -10.99 -0.08 10.03 16 8 O -0.39 -9.78 11.73 5.56 0.07 -9.72 16 9 N -0.66 -13.45 5.24 -11.40 -0.06 -13.51 16 10 C 0.37 9.13 7.43 -154.97 -1.15 7.98 16 11 C -0.35 -7.97 9.95 -38.89 -0.39 -8.36 16 12 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 13 C -0.30 -7.64 9.83 -38.66 -0.38 -8.02 16 14 C 0.27 7.62 6.55 -85.00 -0.56 7.06 16 15 C -0.43 -11.69 9.13 -37.73 -0.34 -12.04 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 17 C 0.06 1.56 5.49 -17.35 -0.10 1.46 16 18 N -0.66 -18.14 9.07 55.55 0.50 -17.63 16 19 Si 0.90 19.22 29.56 -169.99 -5.03 14.20 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 N -0.47 -13.32 5.74 -10.25 -0.06 -13.38 16 24 C -0.11 -1.33 7.21 -25.92 -0.19 -1.51 16 25 C -0.14 -1.66 7.75 -25.92 -0.20 -1.86 16 26 C -0.10 -1.40 6.78 -25.92 -0.18 -1.58 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 32 H 0.41 6.98 6.53 -40.82 -0.27 6.71 16 33 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 36 H 0.27 6.99 8.29 -40.82 -0.34 6.66 16 37 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.26 7.42 -51.92 -0.39 0.88 16 42 H 0.11 1.77 7.43 -51.93 -0.39 1.38 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -32.73 352.67 -8.81 -41.53 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.65 Total: 9.19 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -3.29 Total: -2.13 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.39 Total: -44.52 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.54 Total: -23.58 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.73 -8.81 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893866582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.641 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds