Wall clock time and date at job start Tue Mar 31 2020 13:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47513 * 2 1 4 4 C 1.34229 * 117.00530 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99491 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00382 * 180.02562 * 4 3 2 7 7 C 1.50697 * 112.84858 * 309.66486 * 6 4 3 8 8 O 1.21273 * 120.00134 * 229.07610 * 7 6 4 9 9 N 1.34775 * 120.00063 * 48.80796 * 7 6 4 10 10 C 1.39273 * 120.00466 * 175.33233 * 9 7 6 11 11 C 1.39667 * 119.57736 * 185.31134 * 10 9 7 12 12 C 1.38657 * 119.49479 * 179.76474 * 11 10 9 13 13 C 1.38339 * 118.66730 * 0.49811 * 12 11 10 14 14 C 1.40577 * 119.13520 * 359.74325 * 13 12 11 15 15 C 1.41339 * 119.79174 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99999 * 5.26247 * 15 14 13 17 17 C 1.40023 * 119.99871 * 185.26448 * 15 14 13 18 18 N 1.30740 * 120.00160 * 354.96155 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 174.96695 * 17 15 14 20 20 H 1.48498 * 109.47023 * 94.99529 * 19 17 15 21 21 H 1.48498 * 109.46991 * 214.99591 * 19 17 15 22 22 H 1.48503 * 109.46886 * 334.99613 * 19 17 15 23 23 N 1.31910 * 119.56937 * 5.57575 * 10 9 7 24 24 C 1.53779 * 113.69221 * 80.93566 * 6 4 3 25 25 C 1.53776 * 87.08246 * 89.12732 * 24 6 4 26 26 C 1.53780 * 113.61580 * 178.47073 * 6 4 3 27 27 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47007 * 300.00162 * 1 2 3 29 29 H 1.09000 * 109.46718 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47007 * 239.99838 * 2 1 3 31 31 H 1.09004 * 109.47187 * 120.00054 * 2 1 3 32 32 H 0.97004 * 120.00002 * 355.32756 * 9 7 6 33 33 H 1.08002 * 120.25230 * 0.02562 * 11 10 9 34 34 H 1.08005 * 120.66625 * 180.22047 * 12 11 10 35 35 H 1.08010 * 120.43478 * 179.77147 * 13 12 11 36 36 H 0.97002 * 120.00478 * 180.02562 * 18 17 15 37 37 H 1.08995 * 113.61548 * 203.67554 * 24 6 4 38 38 H 1.09002 * 113.60974 * 334.57737 * 24 6 4 39 39 H 1.09005 * 113.61689 * 270.88407 * 25 24 6 40 40 H 1.08997 * 113.69695 * 139.99373 * 25 24 6 41 41 H 1.09011 * 113.61361 * 25.34532 * 26 6 4 42 42 H 1.08992 * 113.61638 * 156.16371 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 6 3.3258 3.8172 -1.0678 8 8 4.0509 4.4585 -1.7984 9 7 1.9880 3.8872 -1.2155 10 6 1.4345 4.7727 -2.1370 11 6 0.0472 4.9192 -2.2048 12 6 -0.5019 5.8049 -3.1196 13 6 0.3481 6.5133 -3.9498 14 6 1.7356 6.3178 -3.8365 15 6 2.6168 7.0347 -4.6775 16 1 2.2308 7.7914 -5.3444 17 6 3.9902 6.7639 -4.6458 18 7 4.4701 5.9195 -3.7706 19 14 5.1369 7.6092 -5.8542 20 1 5.7207 8.8182 -5.2197 21 1 6.2268 6.6763 -6.2378 22 1 4.3748 8.0050 -7.0657 23 7 2.2271 5.4583 -2.9382 24 6 3.9516 3.5927 1.3920 25 6 5.3416 2.9604 1.5727 26 6 5.4579 2.9681 0.0393 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.4106 3.3209 -0.6799 33 1 -0.5929 4.3501 -1.5468 34 1 -1.5720 5.9356 -3.1857 35 1 -0.0490 7.2080 -4.6753 36 1 5.4216 5.7322 -3.7484 37 1 3.9681 4.6821 1.3610 38 1 3.2004 3.1991 2.0767 39 1 5.3134 1.9594 2.0034 40 1 6.0592 3.6142 2.0683 41 1 5.9229 2.0702 -0.3679 42 1 5.8863 3.8861 -0.3628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893866582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:01 Heat of formation + Delta-G solvation = -60.532317 kcal Electronic energy + Delta-G solvation = -27568.027275 eV Core-core repulsion = 23707.223671 eV Total energy + Delta-G solvation = -3860.803604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.53822 -40.83141 -39.80266 -38.49704 -37.38231 -35.94192 -34.87192 -32.70519 -32.23225 -31.14030 -28.81362 -27.37178 -26.79410 -24.79841 -23.90489 -23.21009 -22.91750 -21.48381 -20.48511 -19.81360 -18.78982 -18.16431 -17.99558 -17.55773 -16.91910 -16.46796 -16.26433 -15.82996 -15.75239 -15.55644 -15.43162 -14.99059 -14.68727 -14.21085 -13.99634 -13.78817 -13.73991 -13.42379 -13.16631 -12.94302 -12.88078 -12.73053 -12.56895 -12.53150 -12.44396 -12.31219 -12.08694 -11.77916 -11.60342 -11.56518 -11.48025 -11.43405 -10.87324 -10.65071 -9.90163 -9.12212 -8.83860 -8.06700 -6.41659 0.76168 0.93635 1.22923 1.36004 1.40236 1.51078 1.55027 2.05470 2.24873 2.26661 2.98051 3.08135 3.36469 3.59374 3.67665 3.77510 4.00833 4.05289 4.05873 4.28783 4.33918 4.40908 4.63174 4.70343 4.74130 4.79497 4.85083 4.88782 4.94461 4.95734 4.96603 4.98989 5.06679 5.09555 5.28388 5.31269 5.38859 5.68686 5.83614 5.92886 6.14603 6.35498 6.48598 6.69879 6.81894 7.07414 7.54316 8.32777 8.56329 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.004960 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.202436 B = 5643.699927 C = 7078.813704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.500 3.500 5 O -0.514 6.514 6 C -0.116 4.116 7 C 0.485 3.515 8 O -0.442 6.442 9 N -0.647 5.647 10 C 0.348 3.652 11 C -0.343 4.343 12 C -0.033 4.033 13 C -0.327 4.327 14 C 0.237 3.763 15 C -0.466 4.466 16 H 0.086 0.914 17 C 0.014 3.986 18 N -0.694 5.694 19 Si 0.974 3.026 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.256 1.256 23 N -0.508 5.508 24 C -0.097 4.097 25 C -0.122 4.122 26 C -0.103 4.103 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.420 0.580 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.270 0.730 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -9.856 12.361 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.275 6.275 4 C 0.343 3.657 5 O -0.402 6.402 6 C -0.121 4.121 7 C 0.267 3.733 8 O -0.307 6.307 9 N -0.297 5.297 10 C 0.110 3.890 11 C -0.368 4.368 12 C -0.057 4.057 13 C -0.349 4.349 14 C 0.112 3.888 15 C -0.497 4.497 16 H 0.104 0.896 17 C -0.211 4.211 18 N -0.314 5.314 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.180 1.180 23 N -0.228 5.228 24 C -0.134 4.134 25 C -0.159 4.159 26 C -0.141 4.141 27 H 0.122 0.878 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.287 -9.942 11.994 15.632 hybrid contribution -0.719 0.000 -0.739 1.031 sum -2.006 -9.943 11.255 15.151 Atomic orbital electron populations 1.21863 0.90221 1.04606 1.03887 1.23404 0.97198 0.78305 1.02900 1.86384 1.23021 1.34783 1.83332 1.22512 0.81148 0.90476 0.71601 1.90627 1.60945 1.42673 1.45995 1.22264 1.00037 0.89885 0.99931 1.20601 0.83067 0.84261 0.85357 1.91159 1.59055 1.40407 1.40127 1.43474 1.07422 1.39769 1.39075 1.19138 0.89488 0.90468 0.89947 1.20963 0.92647 1.12380 1.10826 1.21031 0.99130 0.92906 0.92620 1.21820 0.94471 1.10392 1.08265 1.18871 0.90833 0.89379 0.89723 1.19896 0.92354 1.18315 1.19093 0.89590 1.27003 1.00388 0.96002 0.97757 1.70496 1.13745 1.21594 1.25544 0.85325 0.77701 0.78513 0.78962 1.18968 1.19969 1.17958 1.68646 1.35575 1.11050 1.07532 1.22904 0.99844 1.01287 0.89410 1.22861 0.96565 1.02262 0.94249 1.22829 0.88740 1.03741 0.98771 0.87815 0.90336 0.92066 0.91998 0.89766 0.74067 0.85191 0.84386 0.87651 0.91879 0.88340 0.87772 0.88835 0.88045 0.90610 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.07 6.19 71.98 0.45 1.52 16 3 O -0.36 -9.23 7.99 -51.41 -0.41 -9.64 16 4 C 0.50 14.96 6.73 71.24 0.48 15.43 16 5 O -0.51 -16.78 15.58 21.95 0.34 -16.44 16 6 C -0.12 -3.63 1.22 -53.15 -0.07 -3.70 16 7 C 0.49 20.38 6.88 87.66 0.60 20.98 16 8 O -0.44 -23.02 11.73 -3.01 -0.04 -23.06 16 9 N -0.65 -26.41 5.24 -308.37 -1.62 -28.02 16 10 C 0.35 17.17 7.43 133.25 0.99 18.16 16 11 C -0.34 -14.80 9.95 22.72 0.23 -14.58 16 12 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 13 C -0.33 -16.50 9.83 22.86 0.22 -16.28 16 14 C 0.24 13.77 6.55 40.19 0.26 14.04 16 15 C -0.47 -26.61 9.13 23.47 0.21 -26.39 16 16 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 17 C 0.01 0.75 5.49 85.29 0.47 1.22 16 18 N -0.69 -40.10 9.07 21.84 0.20 -39.91 16 19 Si 0.97 40.88 29.56 68.60 2.03 42.91 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 N -0.51 -29.44 5.74 -186.35 -1.07 -30.51 16 24 C -0.10 -2.25 7.21 31.12 0.22 -2.03 16 25 C -0.12 -2.58 7.75 31.12 0.24 -2.34 16 26 C -0.10 -3.05 6.78 31.12 0.21 -2.84 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 31 H 0.08 1.42 8.13 -2.38 -0.02 1.41 16 32 H 0.42 13.90 6.53 -92.71 -0.61 13.30 16 33 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 35 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 36 H 0.27 14.69 8.29 -92.71 -0.77 13.92 16 37 H 0.10 2.44 8.09 -2.39 -0.02 2.42 16 38 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 39 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.33 7.42 -2.38 -0.02 2.31 16 42 H 0.09 3.14 7.43 -2.39 -0.02 3.12 16 Total: -1.00 -74.71 352.67 5.37 -69.33 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.44 Total: 34.66 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 5.49 Total: 0.67 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -2.49 Total: -98.44 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.10 Total: -49.13 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -74.71 5.37 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893866582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.802 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds