Wall clock time and date at job start Tue Mar 31 2020 13:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32996 * 1 3 3 C 1.47095 * 120.00157 * 2 1 4 4 O 1.21616 * 120.00275 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99785 * 359.97438 * 5 3 2 7 7 C 1.53000 * 109.47006 * 270.00435 * 6 5 3 8 8 C 1.46493 * 120.00314 * 180.02562 * 5 3 2 9 9 C 1.50703 * 109.47167 * 269.99750 * 8 5 3 10 10 O 1.21289 * 119.99902 * 359.97438 * 9 8 5 11 11 N 1.34772 * 120.00214 * 179.97438 * 9 8 5 12 12 C 1.39925 * 120.00215 * 174.78781 * 11 9 8 13 13 C 1.38969 * 120.03216 * 326.31943 * 12 11 9 14 14 C 1.38150 * 120.06449 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.14342 * 359.70331 * 14 13 12 16 16 C 1.38915 * 120.06524 * 0.54710 * 15 14 13 17 17 O 1.35750 * 120.02965 * 179.74314 * 16 15 14 18 18 C 1.34834 * 116.99402 * 173.82644 * 17 16 15 19 19 H 1.07995 * 120.00374 * 354.60408 * 18 17 16 20 20 C 1.38657 * 119.99727 * 174.60593 * 18 17 16 21 21 N 1.31554 * 120.00264 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00019 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 90.00181 * 22 20 18 24 24 H 1.48500 * 109.46898 * 210.00273 * 22 20 18 25 25 H 1.48497 * 109.46956 * 330.00132 * 22 20 18 26 26 C 1.38710 * 120.03903 * 146.34780 * 12 11 9 27 27 H 1.07994 * 119.99871 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99965 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00045 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47275 * 29.99993 * 6 5 3 31 31 H 1.08994 * 109.47190 * 150.00552 * 6 5 3 32 32 H 1.09001 * 109.47171 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47126 * 300.00143 * 7 6 5 34 34 H 1.09000 * 109.47424 * 59.99792 * 7 6 5 35 35 H 1.08998 * 109.47722 * 149.99916 * 8 5 3 36 36 H 1.08997 * 109.47235 * 29.99453 * 8 5 3 37 37 H 0.96999 * 120.00183 * 354.78589 * 11 9 8 38 38 H 1.08001 * 119.96350 * 0.02586 * 13 12 11 39 39 H 1.07996 * 119.93282 * 179.97438 * 14 13 12 40 40 H 1.07997 * 119.97102 * 180.30102 * 15 14 13 41 41 H 0.96996 * 120.00599 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.07082 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2739 -0.0005 6 6 4.1458 0.0051 -0.0005 7 6 4.4012 -0.4363 1.4420 8 6 4.1458 2.5425 0.0000 9 6 4.3965 2.9785 -1.4206 10 8 4.0025 2.2963 -2.3428 11 7 5.0585 4.1264 -1.6664 12 6 5.3871 4.4769 -2.9806 13 6 5.6994 3.4889 -3.9066 14 6 6.0244 3.8343 -5.2041 15 6 6.0342 5.1619 -5.5870 16 6 5.7280 6.1545 -4.6647 17 8 5.7429 7.4589 -5.0404 18 6 5.3133 8.3613 -4.1354 19 1 4.8966 8.0282 -3.1964 20 6 5.4063 9.7172 -4.4104 21 7 4.9876 10.5978 -3.5273 22 14 6.1275 10.2935 -6.0344 23 1 5.0433 10.4167 -7.0415 24 1 6.7800 11.6140 -5.8453 25 1 7.1326 9.3078 -6.5071 26 6 5.4021 5.8110 -3.3603 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8700 -0.9353 0.0004 30 1 3.5565 -0.7546 -0.5139 31 1 5.0980 0.1353 -0.5146 32 1 4.9466 -1.3800 1.4420 33 1 4.9905 0.3235 1.9555 34 1 3.4490 -0.5665 1.9562 35 1 5.0984 2.4119 0.5134 36 1 3.5570 3.3019 0.5145 37 1 5.3072 4.7096 -0.9323 38 1 5.6880 2.4500 -3.6115 39 1 6.2672 3.0648 -5.9219 40 1 6.2840 5.4284 -6.6034 41 1 5.0530 11.5463 -3.7195 42 1 5.1598 6.5807 -2.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900237108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:40 Heat of formation + Delta-G solvation = -34.577454 kcal Electronic energy + Delta-G solvation = -25835.601697 eV Core-core repulsion = 21975.923581 eV Total energy + Delta-G solvation = -3859.678117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67969 -39.69617 -38.67018 -36.69336 -36.05032 -34.26846 -33.28045 -32.35597 -31.32610 -29.71051 -29.07185 -27.73487 -25.21710 -24.13227 -23.20621 -21.79527 -21.77428 -20.05945 -18.88301 -18.15190 -17.86377 -17.70879 -17.10821 -16.52489 -15.49977 -15.40714 -15.09193 -15.02792 -14.43778 -14.40397 -14.18806 -13.85744 -13.79230 -13.60941 -13.59883 -13.08192 -12.98209 -12.57468 -12.35551 -12.26450 -12.06352 -11.91784 -11.67106 -11.48375 -11.22316 -10.97219 -10.70824 -10.30969 -10.11651 -10.08155 -10.03572 -9.72412 -9.50327 -8.91170 -8.83338 -7.80535 -7.30206 -6.41902 -4.09240 1.16271 1.88007 2.26482 2.53390 2.79231 3.08878 3.23295 3.26071 3.39817 3.41467 4.23877 4.26655 4.48901 4.51892 4.67114 4.78060 4.82695 4.87868 4.91672 5.05459 5.08624 5.14335 5.33082 5.34271 5.40947 5.61148 5.77025 5.90558 5.93457 5.96416 5.98803 6.14625 6.17951 6.21276 6.47003 6.87533 6.92236 7.09334 7.17858 7.19639 7.54565 7.68846 7.77745 7.97039 8.02311 8.27261 8.93372 9.55420 10.65817 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002701 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.455671 B =10362.802738 C =10878.414119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.213 4.213 3 C 0.550 3.450 4 O -0.537 6.537 5 N -0.593 5.593 6 C 0.107 3.893 7 C -0.173 4.173 8 C 0.097 3.903 9 C 0.495 3.505 10 O -0.511 6.511 11 N -0.669 5.669 12 C 0.182 3.818 13 C -0.198 4.198 14 C -0.065 4.065 15 C -0.201 4.201 16 C 0.174 3.826 17 O -0.215 6.215 18 C -0.389 4.389 19 H 0.105 0.895 20 C 0.064 3.936 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.243 4.243 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.409 0.591 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -22.651 10.421 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.233 4.233 3 C 0.341 3.659 4 O -0.415 6.415 5 N -0.325 5.325 6 C -0.016 4.016 7 C -0.231 4.231 8 C -0.030 4.030 9 C 0.280 3.720 10 O -0.385 6.385 11 N -0.314 5.314 12 C 0.088 3.912 13 C -0.219 4.219 14 C -0.084 4.084 15 C -0.221 4.221 16 C 0.122 3.878 17 O -0.120 6.120 18 C -0.465 4.465 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.265 4.265 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.244 0.756 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.992 -22.274 9.658 24.298 hybrid contribution 0.425 0.713 -0.126 0.840 sum -0.567 -21.561 9.532 23.581 Atomic orbital electron populations 1.24772 0.95374 1.03374 0.89706 1.22800 0.96311 0.96923 1.07293 1.18711 0.81607 0.90080 0.75522 1.90816 1.67750 1.33389 1.49533 1.47383 1.05580 1.05979 1.73511 1.21631 0.97696 0.85049 0.97238 1.22255 1.02404 1.01801 0.96628 1.21273 0.99186 0.88352 0.94141 1.21224 0.77400 0.81111 0.92243 1.90716 1.48437 1.53607 1.45750 1.43482 1.56873 1.23055 1.08000 1.17421 0.97085 0.92966 0.83695 1.20556 1.09105 0.98308 0.93955 1.20514 0.97822 0.94790 0.95233 1.20241 1.11247 0.91359 0.99220 1.18815 0.92809 0.84767 0.91457 1.83610 1.74739 1.12016 1.41674 1.20734 1.40080 0.85870 0.99825 0.87792 1.24466 0.96328 0.94299 0.98871 1.69642 1.45341 1.02191 1.34615 0.86174 0.80104 0.78082 0.82514 1.19847 1.20842 1.18309 1.20950 1.13016 0.94752 0.97778 0.86757 0.86647 0.85332 0.89740 0.90040 0.91210 0.92142 0.92162 0.87137 0.86578 0.75621 0.86346 0.86490 0.86378 0.91049 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 14.31 28.91 0.41 -0.35 16 2 C -0.21 -1.95 9.21 -37.81 -0.35 -2.30 16 3 C 0.55 7.12 7.62 -12.66 -0.10 7.02 16 4 O -0.54 -9.17 15.80 5.26 0.08 -9.09 16 5 N -0.59 -6.36 1.96 -176.46 -0.35 -6.70 16 6 C 0.11 0.77 5.84 -4.04 -0.02 0.75 16 7 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 8 C 0.10 1.03 5.89 -5.20 -0.03 1.00 16 9 C 0.49 7.39 7.63 -10.99 -0.08 7.31 16 10 O -0.51 -9.52 14.14 5.55 0.08 -9.44 16 11 N -0.67 -10.17 5.34 -9.88 -0.05 -10.22 16 12 C 0.18 3.48 6.27 -83.72 -0.52 2.95 16 13 C -0.20 -3.72 8.65 -39.34 -0.34 -4.06 16 14 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.09 9.99 -39.36 -0.39 -4.49 16 16 C 0.17 4.09 6.64 -39.13 -0.26 3.83 16 17 O -0.22 -5.72 8.58 0.04 0.00 -5.72 16 18 C -0.39 -11.00 9.90 30.89 0.31 -10.70 16 19 H 0.10 3.00 5.53 -52.49 -0.29 2.71 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.46 13.96 55.48 0.77 -24.68 16 22 Si 0.91 21.75 28.62 -169.99 -4.86 16.88 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.24 -5.32 9.04 -39.21 -0.35 -5.67 16 27 H 0.11 1.11 7.49 -52.49 -0.39 0.72 16 28 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 29 H 0.13 0.80 6.22 -52.48 -0.33 0.47 16 30 H 0.08 0.54 6.09 -51.93 -0.32 0.22 16 31 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.12 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.41 4.89 8.82 -40.82 -0.36 4.53 16 38 H 0.12 2.14 6.43 -52.49 -0.34 1.80 16 39 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.14 3.07 5.71 -52.49 -0.30 2.77 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -36.12 363.28 -5.92 -42.04 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.22 Total: 6.53 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.85 Total: -5.07 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.38 Total: -41.61 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.16 Total: -24.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.12 -5.92 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.460 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds