Wall clock time and date at job start Tue Mar 31 2020 13:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32996 * 1 3 3 C 1.47095 * 120.00157 * 2 1 4 4 O 1.21616 * 120.00275 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00215 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99785 * 359.97438 * 5 3 2 7 7 C 1.53000 * 109.47006 * 270.00435 * 6 5 3 8 8 C 1.46493 * 120.00314 * 180.02562 * 5 3 2 9 9 C 1.50703 * 109.47167 * 269.99750 * 8 5 3 10 10 O 1.21289 * 119.99902 * 359.97438 * 9 8 5 11 11 N 1.34772 * 120.00214 * 179.97438 * 9 8 5 12 12 C 1.39925 * 120.00215 * 174.78781 * 11 9 8 13 13 C 1.38969 * 120.03216 * 326.31943 * 12 11 9 14 14 C 1.38150 * 120.06449 * 180.02562 * 13 12 11 15 15 C 1.38171 * 120.14342 * 359.70331 * 14 13 12 16 16 C 1.38915 * 120.06524 * 0.54710 * 15 14 13 17 17 O 1.35750 * 120.02965 * 179.74314 * 16 15 14 18 18 C 1.34834 * 116.99402 * 173.82644 * 17 16 15 19 19 H 1.07995 * 120.00374 * 354.60408 * 18 17 16 20 20 C 1.38657 * 119.99727 * 174.60593 * 18 17 16 21 21 N 1.31554 * 120.00264 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00019 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46783 * 90.00181 * 22 20 18 24 24 H 1.48500 * 109.46898 * 210.00273 * 22 20 18 25 25 H 1.48497 * 109.46956 * 330.00132 * 22 20 18 26 26 C 1.38710 * 120.03903 * 146.34780 * 12 11 9 27 27 H 1.07994 * 119.99871 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.99965 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00045 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47275 * 29.99993 * 6 5 3 31 31 H 1.08994 * 109.47190 * 150.00552 * 6 5 3 32 32 H 1.09001 * 109.47171 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47126 * 300.00143 * 7 6 5 34 34 H 1.09000 * 109.47424 * 59.99792 * 7 6 5 35 35 H 1.08998 * 109.47722 * 149.99916 * 8 5 3 36 36 H 1.08997 * 109.47235 * 29.99453 * 8 5 3 37 37 H 0.96999 * 120.00183 * 354.78589 * 11 9 8 38 38 H 1.08001 * 119.96350 * 0.02586 * 13 12 11 39 39 H 1.07996 * 119.93282 * 179.97438 * 14 13 12 40 40 H 1.07997 * 119.97102 * 180.30102 * 15 14 13 41 41 H 0.96996 * 120.00599 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.07082 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4133 1.2739 -0.0005 6 6 4.1458 0.0051 -0.0005 7 6 4.4012 -0.4363 1.4420 8 6 4.1458 2.5425 0.0000 9 6 4.3965 2.9785 -1.4206 10 8 4.0025 2.2963 -2.3428 11 7 5.0585 4.1264 -1.6664 12 6 5.3871 4.4769 -2.9806 13 6 5.6994 3.4889 -3.9066 14 6 6.0244 3.8343 -5.2041 15 6 6.0342 5.1619 -5.5870 16 6 5.7280 6.1545 -4.6647 17 8 5.7429 7.4589 -5.0404 18 6 5.3133 8.3613 -4.1354 19 1 4.8966 8.0282 -3.1964 20 6 5.4063 9.7172 -4.4104 21 7 4.9876 10.5978 -3.5273 22 14 6.1275 10.2935 -6.0344 23 1 5.0433 10.4167 -7.0415 24 1 6.7800 11.6140 -5.8453 25 1 7.1326 9.3078 -6.5071 26 6 5.4021 5.8110 -3.3603 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8700 -0.9353 0.0004 30 1 3.5565 -0.7546 -0.5139 31 1 5.0980 0.1353 -0.5146 32 1 4.9466 -1.3800 1.4420 33 1 4.9905 0.3235 1.9555 34 1 3.4490 -0.5665 1.9562 35 1 5.0984 2.4119 0.5134 36 1 3.5570 3.3019 0.5145 37 1 5.3072 4.7096 -0.9323 38 1 5.6880 2.4500 -3.6115 39 1 6.2672 3.0648 -5.9219 40 1 6.2840 5.4284 -6.6034 41 1 5.0530 11.5463 -3.7195 42 1 5.1598 6.5807 -2.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900237108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:39 Heat of formation + Delta-G solvation = -59.191688 kcal Electronic energy + Delta-G solvation = -25836.669050 eV Core-core repulsion = 21975.923581 eV Total energy + Delta-G solvation = -3860.745470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85098 -40.99983 -40.20646 -38.26181 -37.01031 -35.69955 -34.43188 -34.00522 -32.07444 -31.13798 -30.59329 -28.84631 -27.20656 -24.89989 -24.14633 -23.45215 -22.91664 -21.44463 -20.02739 -19.62567 -19.38655 -18.70690 -18.35206 -17.61679 -17.00002 -16.88746 -16.45766 -16.18249 -15.96342 -15.71657 -15.50995 -15.20550 -14.95151 -14.73681 -14.62170 -14.39747 -14.21868 -14.04653 -13.61407 -13.39622 -13.12549 -12.99242 -12.81984 -12.75538 -12.47059 -12.42233 -12.09762 -12.01572 -11.60168 -11.34624 -11.17089 -11.02092 -10.84418 -10.78187 -9.82222 -9.43655 -8.96627 -8.51565 -6.25005 0.33119 0.41627 0.61420 1.31686 1.35960 1.49500 1.51922 1.66318 2.16303 2.27515 2.36523 2.74697 3.06794 3.08557 3.56876 3.59567 3.99606 4.08862 4.11887 4.21261 4.26851 4.28088 4.38555 4.41564 4.57435 4.61045 4.67714 4.73688 4.85400 4.88093 4.98942 5.28634 5.29882 5.32021 5.35868 5.41352 5.44462 5.51030 5.59008 5.72449 5.86814 6.17774 6.28477 6.37700 6.82421 7.00386 7.08328 7.54942 8.59956 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002701 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.455671 B =10362.802738 C =10878.414119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.226 4.226 3 C 0.535 3.465 4 O -0.595 6.595 5 N -0.591 5.591 6 C 0.100 3.900 7 C -0.165 4.165 8 C 0.101 3.899 9 C 0.494 3.506 10 O -0.548 6.548 11 N -0.664 5.664 12 C 0.182 3.818 13 C -0.190 4.190 14 C -0.052 4.052 15 C -0.203 4.203 16 C 0.140 3.860 17 O -0.239 6.239 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.011 3.989 21 N -0.922 5.922 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.258 4.258 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.163 0.837 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.157 0.843 36 H 0.112 0.888 37 H 0.423 0.577 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.135 0.865 41 H 0.285 0.715 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -26.077 10.163 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.247 4.247 3 C 0.328 3.672 4 O -0.478 6.478 5 N -0.321 5.321 6 C -0.021 4.021 7 C -0.223 4.223 8 C -0.026 4.026 9 C 0.282 3.718 10 O -0.425 6.425 11 N -0.310 5.310 12 C 0.087 3.913 13 C -0.211 4.211 14 C -0.071 4.071 15 C -0.222 4.222 16 C 0.090 3.910 17 O -0.146 6.146 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.793 3.207 23 H -0.192 1.192 24 H -0.192 1.192 25 H -0.184 1.184 26 C -0.280 4.280 27 H 0.108 0.892 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.130 0.870 37 H 0.261 0.739 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.153 0.847 41 H 0.095 0.905 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.123 -25.763 9.445 27.440 hybrid contribution 0.051 1.458 0.041 1.459 sum 0.175 -24.305 9.486 26.091 Atomic orbital electron populations 1.25032 0.95256 1.04102 0.87774 1.22974 0.96656 0.96397 1.08632 1.19490 0.82420 0.90734 0.74590 1.90782 1.68992 1.35505 1.52475 1.47614 1.05300 1.07107 1.72109 1.21910 0.97509 0.83647 0.99016 1.22191 1.02588 1.02686 0.94797 1.21406 1.01326 0.88644 0.91192 1.22054 0.75929 0.80078 0.93728 1.90686 1.49851 1.54640 1.47304 1.43538 1.56737 1.23677 1.07064 1.17532 0.96139 0.91971 0.85646 1.20903 1.07327 0.98729 0.94140 1.20998 0.95608 0.94724 0.95737 1.20562 1.10592 0.91559 0.99510 1.19377 0.94359 0.84368 0.92932 1.83550 1.76614 1.13016 1.41421 1.20667 1.40593 0.86845 0.99493 0.90338 1.25286 0.96811 0.94218 1.02406 1.69724 1.47211 1.02718 1.36610 0.85210 0.79362 0.77968 0.78146 1.19233 1.19153 1.18426 1.20926 1.13979 0.95725 0.97331 0.89201 0.82712 0.81974 0.88740 0.89685 0.89237 0.92092 0.92360 0.82507 0.86963 0.73944 0.84919 0.82117 0.84683 0.90521 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 14.31 66.65 0.95 -0.27 16 2 C -0.23 -3.77 9.21 23.43 0.22 -3.55 16 3 C 0.53 13.59 7.62 86.57 0.66 14.25 16 4 O -0.60 -21.04 15.80 -4.08 -0.06 -21.10 16 5 N -0.59 -11.74 1.96 -830.46 -1.63 -13.36 16 6 C 0.10 1.16 5.84 86.38 0.50 1.66 16 7 C -0.16 -1.12 10.24 71.98 0.74 -0.38 16 8 C 0.10 2.00 5.89 85.64 0.50 2.50 16 9 C 0.49 14.27 7.63 87.66 0.67 14.94 16 10 O -0.55 -19.83 14.14 -3.06 -0.04 -19.87 16 11 N -0.66 -19.88 5.34 -303.55 -1.62 -21.50 16 12 C 0.18 6.90 6.27 38.14 0.24 7.14 16 13 C -0.19 -6.72 8.65 22.42 0.19 -6.53 16 14 C -0.05 -1.74 10.03 22.23 0.22 -1.52 16 15 C -0.20 -7.99 9.99 22.42 0.22 -7.77 16 16 C 0.14 6.68 6.64 22.56 0.15 6.83 16 17 O -0.24 -13.08 8.58 -22.78 -0.20 -13.28 16 18 C -0.40 -23.72 9.90 67.92 0.67 -23.05 16 19 H 0.08 4.89 5.53 -2.91 -0.02 4.88 16 20 C 0.01 0.66 5.49 84.83 0.47 1.13 16 21 N -0.92 -55.32 13.96 21.61 0.30 -55.02 16 22 Si 0.97 45.60 28.62 68.60 1.96 47.56 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.26 -11.67 9.04 22.51 0.20 -11.46 16 27 H 0.09 1.78 7.49 -2.91 -0.02 1.76 16 28 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 29 H 0.16 1.48 6.22 -2.91 -0.02 1.46 16 30 H 0.09 0.90 6.09 -2.39 -0.01 0.89 16 31 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.16 1.60 8.07 -2.39 -0.02 1.58 16 36 H 0.11 2.39 7.42 -2.39 -0.02 2.37 16 37 H 0.42 10.06 8.82 -92.71 -0.82 9.24 16 38 H 0.13 4.40 6.43 -2.91 -0.02 4.38 16 39 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.12 5.67 5.71 -2.91 -0.02 5.65 16 Total: -1.00 -83.21 363.28 5.57 -77.64 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.24 Total: 25.01 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 6.62 Total: -6.07 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.95 Total: -89.89 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.30 Total: -54.26 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.96 Total: 47.56 kcal Total: -83.21 5.57 -77.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.446 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds