Wall clock time and date at job start Tue Mar 31 2020 13:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47580 * 2 1 4 4 C 1.35927 * 117.00187 * 179.97438 * 3 2 1 5 5 C 1.38685 * 119.95402 * 0.02562 * 4 3 2 6 6 C 1.37974 * 120.11993 * 179.97438 * 5 4 3 7 7 C 1.39368 * 120.02987 * 359.97438 * 6 5 4 8 8 C 1.48368 * 120.04655 * 180.02562 * 7 6 5 9 9 C 1.42309 * 126.94288 * 4.70734 * 8 7 6 10 10 C 1.35213 * 103.93557 * 179.85761 * 9 8 7 11 11 C 1.50699 * 126.65469 * 180.16511 * 10 9 8 12 12 N 1.46496 * 109.47401 * 90.31203 * 11 10 9 13 13 C 1.36941 * 120.00405 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00217 * 179.97438 * 13 12 11 16 16 N 1.31621 * 120.00292 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99932 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47193 * 89.99985 * 17 15 13 19 19 H 1.48503 * 109.47000 * 209.99895 * 17 15 13 20 20 H 1.48499 * 109.46948 * 329.99605 * 17 15 13 21 21 O 1.34073 * 106.69111 * 0.40541 * 10 9 8 22 22 N 1.20914 * 111.83785 * 359.72429 * 21 10 9 23 23 C 1.39377 * 119.90554 * 359.77163 * 7 6 5 24 24 C 1.38311 * 119.87670 * 0.48128 * 23 7 6 25 25 O 1.35991 * 120.01090 * 179.79433 * 24 23 7 26 26 C 1.42903 * 117.00364 * 359.72514 * 25 24 23 27 27 H 1.08997 * 109.46898 * 299.99752 * 1 2 3 28 28 H 1.09004 * 109.46928 * 60.00106 * 1 2 3 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47190 * 239.99913 * 2 1 3 31 31 H 1.09007 * 109.46941 * 120.00670 * 2 1 3 32 32 H 1.08000 * 119.94137 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.98760 * 179.97438 * 6 5 4 34 34 H 1.08004 * 128.03099 * 359.97438 * 9 8 7 35 35 H 1.09002 * 109.46874 * 210.31309 * 11 10 9 36 36 H 1.08998 * 109.47118 * 330.30933 * 11 10 9 37 37 H 0.96996 * 119.99673 * 359.97438 * 12 11 10 38 38 H 0.96991 * 120.00121 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.05742 * 180.25846 * 23 7 6 40 40 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 41 41 H 1.09001 * 109.46938 * 59.99845 * 26 25 24 42 42 H 1.09004 * 109.46926 * 299.99967 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3540 1.5253 0.0005 5 6 4.1979 0.4247 0.0005 6 6 5.5662 0.6015 0.0005 7 6 6.1034 1.8875 0.0000 8 6 7.5748 2.0780 -0.0005 9 6 8.5685 1.0636 -0.0940 10 6 9.7351 1.7460 -0.0544 11 6 11.1223 1.1610 -0.1221 12 7 11.5553 1.0915 -1.5199 13 6 12.7914 0.5901 -1.8297 14 1 13.4472 0.2464 -1.0435 15 6 13.2014 0.5237 -3.1542 16 7 14.3897 0.0423 -3.4520 17 14 12.0667 1.1176 -4.5141 18 1 12.3127 2.5596 -4.7696 19 1 12.3315 0.3431 -5.7532 20 1 10.6539 0.9221 -4.1006 21 8 9.4185 3.0436 0.0621 22 7 8.2217 3.2137 0.0908 23 6 5.2564 2.9943 -0.0053 24 6 3.8853 2.8127 0.0000 25 8 3.0563 3.8907 -0.0010 26 6 3.6701 5.1812 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 3.7832 -0.5725 0.0005 33 1 6.2214 -0.2571 0.0009 34 1 8.4243 -0.0034 -0.1789 35 1 11.8105 1.7919 0.4405 36 1 11.1153 0.1589 0.3064 37 1 10.9661 1.3998 -2.2260 38 1 14.6763 -0.0037 -4.3774 39 1 5.6700 3.9919 -0.0099 40 1 2.8982 5.9508 -0.0027 41 1 4.2906 5.2881 -0.8913 42 1 4.2899 5.2891 0.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901386158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:31 Heat of formation + Delta-G solvation = 29.285362 kcal Electronic energy + Delta-G solvation = -25409.368972 eV Core-core repulsion = 21552.460155 eV Total energy + Delta-G solvation = -3856.908817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.69653 -40.81998 -38.83300 -37.45496 -35.42961 -33.99216 -32.42960 -32.08491 -30.84612 -30.36823 -29.57455 -27.55132 -26.29940 -24.42883 -23.91295 -22.65456 -22.08026 -21.73696 -20.23303 -18.83526 -18.16872 -17.38936 -17.32489 -16.85843 -16.58144 -16.40484 -15.75923 -15.19927 -14.98388 -14.63760 -14.55000 -14.10785 -13.77322 -13.64488 -13.45916 -13.19612 -12.97410 -12.78641 -12.57851 -12.51984 -12.27403 -12.07168 -11.62965 -11.59238 -11.41896 -11.33008 -11.18859 -11.12282 -10.90109 -10.26343 -10.22015 -9.70096 -9.28761 -9.04394 -8.92281 -7.94473 -7.40705 -5.86502 -3.25496 0.69103 1.06092 1.70170 2.47443 2.83626 2.98736 3.28581 3.34047 3.37773 3.41861 3.57306 3.97020 4.34629 4.51748 4.52044 4.54122 4.63827 4.79337 4.81832 4.84696 4.94419 4.98832 5.10866 5.21188 5.21885 5.25498 5.31363 5.40161 5.41220 5.45300 5.49617 5.60477 5.64920 5.80417 5.94327 6.07871 6.23427 6.27199 6.29682 6.37669 6.76017 7.27521 7.83815 8.30576 8.36520 9.06271 9.78709 9.95733 11.30789 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002607 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.930778 B =10737.515320 C =11250.920680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.304 6.304 4 C 0.109 3.891 5 C -0.173 4.173 6 C -0.088 4.088 7 C -0.010 4.010 8 C 0.052 3.948 9 C -0.218 4.218 10 C -0.012 4.012 11 C 0.231 3.769 12 N -0.750 5.750 13 C -0.253 4.253 14 H 0.096 0.904 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.882 3.118 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.277 1.277 21 O 0.108 5.892 22 N -0.365 5.365 23 C -0.147 4.147 24 C 0.098 3.902 25 O -0.306 6.306 26 C 0.025 3.975 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.174 0.826 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.365 0.635 38 H 0.262 0.738 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.095 2.043 9.453 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.218 6.218 4 C 0.063 3.937 5 C -0.191 4.191 6 C -0.108 4.108 7 C -0.012 4.012 8 C -0.104 4.104 9 C -0.240 4.240 10 C -0.075 4.075 11 C 0.104 3.896 12 N -0.398 5.398 13 C -0.382 4.382 14 H 0.113 0.887 15 C -0.185 4.185 16 N -0.575 5.575 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.203 1.203 21 O 0.039 5.961 22 N -0.067 5.067 23 C -0.167 4.167 24 C 0.052 3.948 25 O -0.220 6.220 26 C -0.071 4.071 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.191 0.809 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.198 0.802 38 H 0.072 0.928 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.580 3.394 9.595 29.398 hybrid contribution -0.321 -0.525 -1.217 1.363 sum -27.901 2.869 8.379 29.273 Atomic orbital electron populations 1.21761 0.92660 1.02805 1.03607 1.22831 0.96033 0.82058 1.01468 1.86156 1.18006 1.28975 1.88689 1.18288 0.83174 0.91050 1.01196 1.20962 0.93454 0.97629 1.07099 1.20860 0.94362 0.96174 0.99364 1.17350 0.87665 0.93084 1.03060 1.21826 0.94628 0.89533 1.04430 1.22452 0.90137 1.01616 1.09832 1.25033 0.99587 0.82719 1.00184 1.19236 0.83527 0.97694 0.89160 1.42665 1.18321 1.78049 1.00721 1.18981 0.90687 1.34811 0.93699 0.88673 1.24640 0.96450 1.00529 0.96835 1.69688 1.18690 1.50771 1.18303 0.86591 0.80672 0.78842 0.82715 1.20809 1.21458 1.20312 1.84805 1.17914 1.26897 1.66463 1.74081 0.89910 1.23087 1.19627 1.21112 0.90732 1.00154 1.04661 1.18052 0.88549 0.85591 1.02569 1.86158 1.33637 1.13052 1.89118 1.23103 0.99922 0.82409 1.01619 0.91507 0.91480 0.90346 0.91908 0.91937 0.84191 0.84670 0.80903 0.92690 0.91645 0.80189 0.92808 0.84026 0.88074 0.92538 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.30 -3.42 9.91 -34.16 -0.34 -3.76 16 4 C 0.11 1.30 6.70 -39.03 -0.26 1.04 16 5 C -0.17 -1.75 9.02 -39.51 -0.36 -2.11 16 6 C -0.09 -0.99 9.59 -39.26 -0.38 -1.36 16 7 C -0.01 -0.14 5.88 -104.88 -0.62 -0.76 16 8 C 0.05 0.80 7.05 -82.48 -0.58 0.22 16 9 C -0.22 -3.26 10.44 -39.09 -0.41 -3.66 16 10 C -0.01 -0.20 6.84 -35.39 -0.24 -0.44 16 11 C 0.23 4.19 6.82 -5.20 -0.04 4.16 16 12 N -0.75 -17.30 5.40 -61.09 -0.33 -17.63 16 13 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 16 14 H 0.10 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 16 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 17 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 21 O 0.11 1.87 11.18 17.09 0.19 2.06 16 22 N -0.36 -6.14 11.82 33.32 0.39 -5.75 16 23 C -0.15 -1.91 8.68 -39.13 -0.34 -2.25 16 24 C 0.10 1.25 6.69 -39.17 -0.26 0.99 16 25 O -0.31 -3.75 10.28 -34.37 -0.35 -4.10 16 26 C 0.02 0.21 9.81 101.05 0.99 1.20 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.14 1.02 6.28 -52.49 -0.33 0.69 16 33 H 0.14 1.26 7.24 -52.49 -0.38 0.88 16 34 H 0.17 2.14 7.59 -52.48 -0.40 1.74 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.37 8.49 5.52 -40.82 -0.23 8.26 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.14 1.77 6.13 -52.49 -0.32 1.45 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 42 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -33.07 358.87 -6.50 -39.57 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.37 Total: 4.34 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.16 Total: -9.66 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.84 Total: -51.05 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.50 Total: -5.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.07 -6.50 -39.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901386158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.852 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds