Wall clock time and date at job start Tue Mar 31 2020 13:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47580 * 2 1 4 4 C 1.35927 * 117.00187 * 179.97438 * 3 2 1 5 5 C 1.38685 * 119.95402 * 0.02562 * 4 3 2 6 6 C 1.37974 * 120.11993 * 179.97438 * 5 4 3 7 7 C 1.39368 * 120.02987 * 359.97438 * 6 5 4 8 8 C 1.48368 * 120.04655 * 180.02562 * 7 6 5 9 9 C 1.42309 * 126.94288 * 4.70734 * 8 7 6 10 10 C 1.35213 * 103.93557 * 179.85761 * 9 8 7 11 11 C 1.50699 * 126.65469 * 180.16511 * 10 9 8 12 12 N 1.46496 * 109.47401 * 90.31203 * 11 10 9 13 13 C 1.36941 * 120.00405 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99589 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00217 * 179.97438 * 13 12 11 16 16 N 1.31621 * 120.00292 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99932 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47193 * 89.99985 * 17 15 13 19 19 H 1.48503 * 109.47000 * 209.99895 * 17 15 13 20 20 H 1.48499 * 109.46948 * 329.99605 * 17 15 13 21 21 O 1.34073 * 106.69111 * 0.40541 * 10 9 8 22 22 N 1.20914 * 111.83785 * 359.72429 * 21 10 9 23 23 C 1.39377 * 119.90554 * 359.77163 * 7 6 5 24 24 C 1.38311 * 119.87670 * 0.48128 * 23 7 6 25 25 O 1.35991 * 120.01090 * 179.79433 * 24 23 7 26 26 C 1.42903 * 117.00364 * 359.72514 * 25 24 23 27 27 H 1.08997 * 109.46898 * 299.99752 * 1 2 3 28 28 H 1.09004 * 109.46928 * 60.00106 * 1 2 3 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47190 * 239.99913 * 2 1 3 31 31 H 1.09007 * 109.46941 * 120.00670 * 2 1 3 32 32 H 1.08000 * 119.94137 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.98760 * 179.97438 * 6 5 4 34 34 H 1.08004 * 128.03099 * 359.97438 * 9 8 7 35 35 H 1.09002 * 109.46874 * 210.31309 * 11 10 9 36 36 H 1.08998 * 109.47118 * 330.30933 * 11 10 9 37 37 H 0.96996 * 119.99673 * 359.97438 * 12 11 10 38 38 H 0.96991 * 120.00121 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.05742 * 180.25846 * 23 7 6 40 40 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 41 41 H 1.09001 * 109.46938 * 59.99845 * 26 25 24 42 42 H 1.09004 * 109.46926 * 299.99967 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3540 1.5253 0.0005 5 6 4.1979 0.4247 0.0005 6 6 5.5662 0.6015 0.0005 7 6 6.1034 1.8875 0.0000 8 6 7.5748 2.0780 -0.0005 9 6 8.5685 1.0636 -0.0940 10 6 9.7351 1.7460 -0.0544 11 6 11.1223 1.1610 -0.1221 12 7 11.5553 1.0915 -1.5199 13 6 12.7914 0.5901 -1.8297 14 1 13.4472 0.2464 -1.0435 15 6 13.2014 0.5237 -3.1542 16 7 14.3897 0.0423 -3.4520 17 14 12.0667 1.1176 -4.5141 18 1 12.3127 2.5596 -4.7696 19 1 12.3315 0.3431 -5.7532 20 1 10.6539 0.9221 -4.1006 21 8 9.4185 3.0436 0.0621 22 7 8.2217 3.2137 0.0908 23 6 5.2564 2.9943 -0.0053 24 6 3.8853 2.8127 0.0000 25 8 3.0563 3.8907 -0.0010 26 6 3.6701 5.1812 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 3.7832 -0.5725 0.0005 33 1 6.2214 -0.2571 0.0009 34 1 8.4243 -0.0034 -0.1789 35 1 11.8105 1.7919 0.4405 36 1 11.1153 0.1589 0.3064 37 1 10.9661 1.3998 -2.2260 38 1 14.6763 -0.0037 -4.3774 39 1 5.6700 3.9919 -0.0099 40 1 2.8982 5.9508 -0.0027 41 1 4.2906 5.2881 -0.8913 42 1 4.2899 5.2891 0.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901386158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:30 Heat of formation + Delta-G solvation = 8.728800 kcal Electronic energy + Delta-G solvation = -25410.260371 eV Core-core repulsion = 21552.460155 eV Total energy + Delta-G solvation = -3857.800216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.91901 -41.64755 -39.61259 -38.33018 -37.15700 -35.10482 -34.15636 -32.72808 -32.39704 -31.40321 -30.42619 -28.39224 -27.87422 -25.20007 -24.89704 -24.29873 -23.28857 -22.58584 -21.32835 -20.13473 -19.50138 -18.63110 -18.40891 -17.94341 -17.43486 -17.28843 -16.61441 -16.47731 -16.27177 -15.86498 -15.61623 -15.30097 -14.98602 -14.94549 -14.49604 -14.31912 -14.16677 -13.80834 -13.50325 -13.34786 -13.26188 -13.13553 -12.98531 -12.89323 -12.45729 -12.38178 -12.35170 -12.16615 -11.98081 -11.83594 -11.79405 -11.19997 -11.05843 -10.55832 -9.82465 -9.39414 -8.83896 -8.04438 -5.40351 -0.29360 0.20349 0.46747 1.37435 1.39526 1.40005 1.46266 2.03651 2.14171 2.22311 2.46040 2.65393 2.91509 3.25397 3.30927 3.70295 3.72764 3.90286 3.95672 4.00562 4.08665 4.17926 4.20291 4.23880 4.27735 4.30267 4.36894 4.45470 4.56186 4.63377 4.75626 4.83311 4.86252 4.90138 4.95972 5.05577 5.12656 5.25769 5.36312 5.47887 5.72549 6.00412 6.17707 6.48737 7.01373 7.14567 7.73883 7.91812 9.15924 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002607 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.930778 B =10737.515320 C =11250.920680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.323 6.323 4 C 0.105 3.895 5 C -0.165 4.165 6 C -0.081 4.081 7 C -0.038 4.038 8 C 0.056 3.944 9 C -0.203 4.203 10 C -0.026 4.026 11 C 0.232 3.768 12 N -0.756 5.756 13 C -0.234 4.234 14 H 0.073 0.927 15 C -0.054 4.054 16 N -0.976 5.976 17 Si 0.945 3.055 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.257 1.257 21 O 0.089 5.911 22 N -0.383 5.383 23 C -0.153 4.153 24 C 0.080 3.920 25 O -0.323 6.323 26 C 0.019 3.981 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.055 0.945 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.791 0.909 9.687 31.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.058 3.942 5 C -0.183 4.183 6 C -0.100 4.100 7 C -0.039 4.039 8 C -0.100 4.100 9 C -0.225 4.225 10 C -0.090 4.090 11 C 0.106 3.894 12 N -0.403 5.403 13 C -0.364 4.364 14 H 0.091 0.909 15 C -0.246 4.246 16 N -0.626 5.626 17 Si 0.773 3.227 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.182 1.182 21 O 0.023 5.977 22 N -0.088 5.088 23 C -0.173 4.173 24 C 0.035 3.965 25 O -0.237 6.237 26 C -0.075 4.075 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.191 0.809 33 H 0.176 0.824 34 H 0.219 0.781 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.198 0.802 38 H 0.068 0.932 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.305 2.271 9.872 31.954 hybrid contribution 0.369 -0.180 -1.153 1.224 sum -29.936 2.090 8.719 31.250 Atomic orbital electron populations 1.21801 0.91697 1.04184 1.02985 1.23181 0.96894 0.80524 1.02822 1.86150 1.17637 1.31555 1.88440 1.18562 0.83908 0.91240 1.00448 1.21295 0.92820 0.98618 1.05593 1.21151 0.95166 0.95848 0.97882 1.17494 0.86682 0.94317 1.05403 1.22187 0.95659 0.89155 1.03011 1.22808 0.89064 1.02796 1.07813 1.24781 0.99272 0.82929 1.01977 1.19298 0.84610 0.98980 0.86517 1.42677 1.16931 1.77688 1.02971 1.19000 0.91681 1.32706 0.93026 0.90902 1.25374 0.97990 1.01859 0.99407 1.69843 1.20875 1.53328 1.18580 0.85559 0.79762 0.77853 0.79512 1.20952 1.21857 1.18160 1.84783 1.18281 1.27324 1.67298 1.74082 0.89826 1.24064 1.20843 1.21100 0.91043 1.00082 1.05041 1.18268 0.88554 0.86389 1.03310 1.86130 1.34401 1.13998 1.89216 1.23310 1.00843 0.81647 1.01705 0.92060 0.92196 0.87934 0.90588 0.90369 0.80924 0.82372 0.78065 0.92297 0.89531 0.80190 0.93157 0.84526 0.85711 0.92590 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.98 0.74 -0.59 16 2 C 0.04 0.46 5.46 71.98 0.39 0.86 16 3 O -0.32 -6.70 9.91 -78.71 -0.78 -7.48 16 4 C 0.11 2.31 6.70 22.63 0.15 2.46 16 5 C -0.16 -2.82 9.02 22.31 0.20 -2.62 16 6 C -0.08 -1.57 9.59 22.48 0.22 -1.35 16 7 C -0.04 -0.96 5.88 -20.03 -0.12 -1.07 16 8 C 0.06 1.64 7.05 42.98 0.30 1.94 16 9 C -0.20 -5.52 10.44 22.58 0.24 -5.28 16 10 C -0.03 -0.83 6.84 24.99 0.17 -0.66 16 11 C 0.23 8.04 6.82 85.63 0.58 8.63 16 12 N -0.76 -33.79 5.40 -347.19 -1.87 -35.67 16 13 C -0.23 -12.70 10.47 84.03 0.88 -11.82 16 14 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 15 C -0.05 -3.10 5.50 84.86 0.47 -2.63 16 16 N -0.98 -60.87 13.97 21.65 0.30 -60.57 16 17 Si 0.95 45.04 27.74 68.60 1.90 46.94 16 18 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 21 O 0.09 3.03 11.18 71.33 0.80 3.83 16 22 N -0.38 -12.66 11.82 -49.43 -0.58 -13.24 16 23 C -0.15 -3.89 8.68 22.56 0.20 -3.69 16 24 C 0.08 1.99 6.69 22.54 0.15 2.14 16 25 O -0.32 -7.80 10.28 -79.44 -0.82 -8.62 16 26 C 0.02 0.33 9.81 113.37 1.11 1.44 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.08 0.66 7.66 -2.38 -0.02 0.65 16 32 H 0.17 1.72 6.28 -2.91 -0.02 1.70 16 33 H 0.16 2.26 7.24 -2.91 -0.02 2.24 16 34 H 0.20 4.13 7.59 -2.91 -0.02 4.11 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.37 16.25 5.52 -92.71 -0.51 15.74 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.14 3.47 6.13 -2.91 -0.02 3.45 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 42 H 0.06 0.94 7.67 -2.38 -0.02 0.92 16 Total: -1.00 -71.87 358.87 5.12 -66.75 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.49 Total: 20.32 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 5.68 Total: -12.26 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -2.16 Total: -109.48 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.80 Total: -12.27 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Total: -71.87 5.12 -66.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901386158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.477 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds