Wall clock time and date at job start Tue Mar 31 2020 13:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47251 * 2 1 4 4 C 1.46505 * 119.99634 * 269.99995 * 3 2 1 5 5 C 1.50695 * 109.47299 * 269.99393 * 4 3 2 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00082 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00280 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47309 * 60.00331 * 9 7 5 11 11 H 1.48502 * 109.47037 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47369 * 299.99868 * 9 7 5 13 13 C 1.34770 * 120.00275 * 89.99465 * 3 2 1 14 14 O 1.21286 * 120.00362 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99951 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.47345 * 179.97438 * 15 13 3 17 17 C 1.34904 * 117.00009 * 180.02562 * 16 15 13 18 18 O 1.21622 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.46242 * 119.99582 * 179.97438 * 17 16 15 20 20 C 1.34914 * 119.99493 * 173.24684 * 19 17 16 21 21 C 1.47176 * 120.00224 * 348.46660 * 20 19 17 22 22 C 1.40282 * 120.58148 * 132.53623 * 21 20 19 23 23 C 1.38295 * 118.26150 * 180.02562 * 22 21 20 24 24 C 1.38392 * 119.33417 * 359.97438 * 23 22 21 25 25 N 1.31943 * 121.14630 * 0.02675 * 24 23 22 26 26 C 1.31657 * 121.90417 * 359.65092 * 25 24 23 27 27 H 1.09006 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47222 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47335 * 60.00535 * 1 2 3 30 30 H 1.09007 * 109.47331 * 239.99747 * 2 1 3 31 31 H 1.09007 * 109.47164 * 119.99725 * 2 1 3 32 32 H 1.08998 * 109.47129 * 30.00232 * 4 3 2 33 33 H 1.09007 * 109.46715 * 149.99780 * 4 3 2 34 34 H 0.96997 * 119.99843 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47160 * 60.00023 * 15 13 3 36 36 H 1.09001 * 109.47193 * 299.99671 * 15 13 3 37 37 H 1.07995 * 120.00347 * 353.24178 * 19 17 16 38 38 H 1.08002 * 119.99715 * 168.75167 * 20 19 17 39 39 H 1.07998 * 120.87159 * 359.97438 * 22 21 20 40 40 H 1.07994 * 120.33101 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.42931 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.74345 * 180.31273 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6172 9 14 5.9134 2.0964 -3.4170 10 1 6.1402 0.6396 -3.5954 11 1 6.1613 2.7975 -4.7024 12 1 6.8412 2.6188 -2.3819 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9921 1.3061 2.4722 16 8 2.3021 2.1815 3.5584 17 6 2.1311 1.6950 4.8050 18 8 1.7292 0.5582 4.9644 19 6 2.4290 2.5346 5.9647 20 6 2.1307 2.1000 7.2066 21 6 1.2840 0.9096 7.3860 22 6 1.6608 -0.1065 8.2768 23 6 0.8297 -1.2041 8.4076 24 6 -0.3357 -1.2645 7.6637 25 7 -0.6661 -0.2942 6.8329 26 6 0.0869 0.7743 6.6764 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.5816 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6759 3.5183 -4.4427 35 1 2.6227 0.4188 2.5299 36 1 0.9443 1.0116 2.5301 37 1 2.8880 3.5025 5.8271 38 1 2.5093 2.6284 8.0691 39 1 2.5764 -0.0340 8.8449 40 1 1.0872 -2.0056 9.0841 41 1 -0.9857 -2.1212 7.7644 42 1 -0.2196 1.5501 5.9903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910186583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:17 Heat of formation + Delta-G solvation = -54.125619 kcal Electronic energy + Delta-G solvation = -25889.341513 eV Core-core repulsion = 22028.815724 eV Total energy + Delta-G solvation = -3860.525789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92140 -40.02282 -38.91570 -36.71877 -35.30485 -34.61313 -32.84156 -32.41207 -30.54442 -30.15354 -29.07703 -26.69078 -24.98485 -23.71804 -23.10557 -22.92815 -22.19192 -19.96938 -18.63772 -18.17539 -17.37058 -16.73492 -16.68132 -16.50243 -16.25845 -15.99850 -15.39011 -14.83476 -14.53603 -14.44684 -14.15761 -13.76395 -13.63653 -13.42339 -13.32428 -13.10318 -12.89815 -12.47178 -12.14101 -12.05587 -12.00638 -11.61661 -11.23008 -10.95374 -10.86753 -10.83784 -10.58833 -10.52588 -10.49249 -10.14920 -9.90792 -9.67923 -9.58782 -8.99332 -8.72323 -8.44521 -7.75013 -6.05771 -4.10772 0.22118 1.09221 1.29715 2.53296 2.76048 3.25757 3.31801 3.36085 3.40066 3.63246 3.89122 4.14006 4.39969 4.43244 4.54722 4.63319 4.68358 4.85638 4.90388 5.06125 5.14891 5.22798 5.24989 5.28774 5.38183 5.44842 5.59023 5.60283 5.74316 5.74789 5.87541 5.94734 6.01927 6.20175 6.35218 6.45134 6.46351 7.00032 7.39747 7.47179 7.68785 7.79136 7.90213 8.20437 8.30230 8.84530 8.99413 9.54190 11.02376 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002669 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.360297 B =10487.393125 C =11046.714573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.050 3.950 16 O -0.320 6.320 17 C 0.486 3.514 18 O -0.502 6.502 19 C -0.173 4.173 20 C -0.016 4.016 21 C -0.124 4.124 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.104 3.896 25 N -0.486 5.486 26 C 0.163 3.837 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -7.494 24.016 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.028 4.028 16 O -0.234 6.234 17 C 0.332 3.668 18 O -0.393 6.393 19 C -0.192 4.192 20 C -0.035 4.035 21 C -0.126 4.126 22 C -0.083 4.083 23 C -0.201 4.201 24 C -0.052 4.052 25 N -0.195 5.195 26 C 0.004 3.996 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.170 0.830 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.571 -7.192 23.328 25.280 hybrid contribution 1.830 -0.360 -0.062 1.866 sum -4.741 -7.552 23.266 24.916 Atomic orbital electron populations 1.22226 0.96488 1.01703 1.02413 1.21504 0.93786 0.83940 1.02969 1.48206 1.63776 1.13401 1.07148 1.19326 0.96441 0.93710 0.77577 1.21390 0.96866 1.32140 1.06401 0.92468 1.24929 0.97909 0.94852 0.96334 1.69920 1.35760 1.33238 1.14394 0.86546 0.84713 0.78256 0.77835 1.20239 1.21145 1.20148 1.19715 0.79687 0.87125 0.84299 1.90714 1.44576 1.17502 1.86744 1.22574 1.02588 0.92885 0.84756 1.86255 1.78451 1.44542 1.14163 1.21526 0.74805 0.86456 0.84041 1.90938 1.42173 1.19672 1.86479 1.22423 1.06209 1.01110 0.89453 1.22403 0.91548 0.92775 0.96775 1.19959 0.97103 0.96294 0.99240 1.21607 0.98718 0.92640 0.95377 1.21983 0.96417 0.99348 1.02322 1.22819 0.94638 0.96476 0.91227 1.67609 1.33235 1.01443 1.17184 1.22769 0.89383 0.94449 0.92957 0.91914 0.93118 0.91781 0.89449 0.91813 0.94629 0.93700 0.92605 0.89045 0.88988 0.82848 0.83172 0.84796 0.84812 0.82954 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.10 1.65 5.93 -4.05 -0.02 1.63 16 3 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.51 10.90 7.75 -10.99 -0.09 10.81 16 14 O -0.52 -13.51 16.08 -14.36 -0.23 -13.74 16 15 C 0.05 0.83 4.41 36.00 0.16 0.99 16 16 O -0.32 -5.31 9.65 -47.81 -0.46 -5.77 16 17 C 0.49 6.65 7.09 33.95 0.24 6.89 16 18 O -0.50 -7.54 12.27 -19.36 -0.24 -7.77 16 19 C -0.17 -1.65 10.05 -37.55 -0.38 -2.03 16 20 C -0.02 -0.12 9.81 -37.13 -0.36 -0.49 16 21 C -0.12 -1.21 4.35 -104.91 -0.46 -1.67 16 22 C -0.06 -0.48 9.95 -38.79 -0.39 -0.87 16 23 C -0.18 -1.45 10.10 -39.50 -0.40 -1.85 16 24 C 0.10 1.00 11.17 -17.45 -0.19 0.81 16 25 N -0.49 -6.03 10.34 -12.83 -0.13 -6.16 16 26 C 0.16 1.92 7.98 -17.04 -0.14 1.78 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 31 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.40 7.39 -51.93 -0.38 1.02 16 36 H 0.09 1.36 7.17 -51.93 -0.37 0.99 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.67 7.45 -52.49 -0.39 1.28 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -36.22 365.71 -7.94 -44.16 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.58 Total: -1.10 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.09 Total: 6.84 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.17 Total: -44.98 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.93 Total: -27.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.22 -7.94 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910186583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds