Wall clock time and date at job start Tue Mar 31 2020 13:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47251 * 2 1 4 4 C 1.46505 * 119.99634 * 269.99995 * 3 2 1 5 5 C 1.50695 * 109.47299 * 269.99393 * 4 3 2 6 6 H 1.08003 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00082 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00280 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99811 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47309 * 60.00331 * 9 7 5 11 11 H 1.48502 * 109.47037 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47369 * 299.99868 * 9 7 5 13 13 C 1.34770 * 120.00275 * 89.99465 * 3 2 1 14 14 O 1.21286 * 120.00362 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99951 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.47345 * 179.97438 * 15 13 3 17 17 C 1.34904 * 117.00009 * 180.02562 * 16 15 13 18 18 O 1.21622 * 120.00079 * 359.97438 * 17 16 15 19 19 C 1.46242 * 119.99582 * 179.97438 * 17 16 15 20 20 C 1.34914 * 119.99493 * 173.24684 * 19 17 16 21 21 C 1.47176 * 120.00224 * 348.46660 * 20 19 17 22 22 C 1.40282 * 120.58148 * 132.53623 * 21 20 19 23 23 C 1.38295 * 118.26150 * 180.02562 * 22 21 20 24 24 C 1.38392 * 119.33417 * 359.97438 * 23 22 21 25 25 N 1.31943 * 121.14630 * 0.02675 * 24 23 22 26 26 C 1.31657 * 121.90417 * 359.65092 * 25 24 23 27 27 H 1.09006 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47222 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47335 * 60.00535 * 1 2 3 30 30 H 1.09007 * 109.47331 * 239.99747 * 2 1 3 31 31 H 1.09007 * 109.47164 * 119.99725 * 2 1 3 32 32 H 1.08998 * 109.47129 * 30.00232 * 4 3 2 33 33 H 1.09007 * 109.46715 * 149.99780 * 4 3 2 34 34 H 0.96997 * 119.99843 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47160 * 60.00023 * 15 13 3 36 36 H 1.09001 * 109.47193 * 299.99671 * 15 13 3 37 37 H 1.07995 * 120.00347 * 353.24178 * 19 17 16 38 38 H 1.08002 * 119.99715 * 168.75167 * 20 19 17 39 39 H 1.07998 * 120.87159 * 359.97438 * 22 21 20 40 40 H 1.07994 * 120.33101 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.42931 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.74345 * 180.31273 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3904 -2.8775 8 7 3.3496 3.1273 -3.6172 9 14 5.9134 2.0964 -3.4170 10 1 6.1402 0.6396 -3.5954 11 1 6.1613 2.7975 -4.7024 12 1 6.8412 2.6188 -2.3819 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9921 1.3061 2.4722 16 8 2.3021 2.1815 3.5584 17 6 2.1311 1.6950 4.8050 18 8 1.7292 0.5582 4.9644 19 6 2.4290 2.5346 5.9647 20 6 2.1307 2.1000 7.2066 21 6 1.2840 0.9096 7.3860 22 6 1.6608 -0.1065 8.2768 23 6 0.8297 -1.2041 8.4076 24 6 -0.3357 -1.2645 7.6637 25 7 -0.6661 -0.2942 6.8329 26 6 0.0869 0.7743 6.6764 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.5816 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6759 3.5183 -4.4427 35 1 2.6227 0.4188 2.5299 36 1 0.9443 1.0116 2.5301 37 1 2.8880 3.5025 5.8271 38 1 2.5093 2.6284 8.0691 39 1 2.5764 -0.0340 8.8449 40 1 1.0872 -2.0056 9.0841 41 1 -0.9857 -2.1212 7.7644 42 1 -0.2196 1.5501 5.9903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910186583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:16 Heat of formation + Delta-G solvation = -76.798258 kcal Electronic energy + Delta-G solvation = -25890.324672 eV Core-core repulsion = 22028.815724 eV Total energy + Delta-G solvation = -3861.508948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96367 -40.99030 -40.39399 -37.87752 -37.01395 -35.37859 -34.95217 -33.09207 -31.81192 -31.33081 -30.45540 -28.48372 -25.95586 -24.85166 -24.41725 -24.18879 -23.33246 -20.91080 -20.22448 -19.14053 -18.66443 -18.24567 -17.93230 -17.76286 -17.49441 -17.09464 -16.90729 -16.23962 -16.01348 -15.36520 -15.27746 -14.83409 -14.75456 -14.53658 -14.43087 -14.17883 -13.93697 -13.91501 -13.62131 -13.54225 -13.30616 -13.10103 -12.70902 -12.66706 -12.53691 -12.23291 -12.05858 -11.81013 -11.78545 -11.72713 -11.26064 -10.75515 -10.65394 -10.57877 -10.31493 -9.57312 -9.45500 -8.24197 -6.39095 -0.50408 0.42156 0.56464 1.34385 1.37591 1.41006 1.48391 1.58640 1.87209 2.33472 2.47417 2.92516 3.05722 3.40367 3.48521 3.67588 3.74112 3.91561 3.94122 3.99539 4.04638 4.11294 4.22819 4.34281 4.51395 4.54530 4.63096 4.81660 4.83850 4.90548 4.90989 4.99639 5.10503 5.16513 5.21927 5.27915 5.31957 5.36790 5.52104 5.77735 5.80454 6.02619 6.53421 6.67476 6.69600 7.07095 7.18854 7.34743 8.83226 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002669 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.360297 B =10487.393125 C =11046.714573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.066 3.934 16 O -0.344 6.344 17 C 0.483 3.517 18 O -0.520 6.520 19 C -0.198 4.198 20 C 0.020 3.980 21 C -0.140 4.140 22 C -0.058 4.058 23 C -0.176 4.176 24 C 0.086 3.914 25 N -0.522 5.522 26 C 0.138 3.862 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -9.480 26.627 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.011 4.011 16 O -0.260 6.260 17 C 0.331 3.669 18 O -0.411 6.411 19 C -0.217 4.217 20 C 0.001 3.999 21 C -0.142 4.142 22 C -0.083 4.083 23 C -0.195 4.195 24 C -0.069 4.069 25 N -0.231 5.231 26 C -0.020 4.020 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.189 0.811 38 H 0.215 0.785 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.190 0.810 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.400 -9.230 25.957 28.074 hybrid contribution 1.364 0.183 -0.750 1.567 sum -4.036 -9.047 25.207 27.084 Atomic orbital electron populations 1.22164 0.94380 1.03721 1.01783 1.21835 0.95500 0.81068 1.04245 1.48207 1.63558 1.15194 1.05764 1.18798 0.95650 0.91657 0.79696 1.21667 0.97782 1.32370 1.06751 0.92782 1.25858 1.02487 0.94357 0.96324 1.70041 1.37854 1.33936 1.14830 0.85458 0.78870 0.79043 0.77385 1.18441 1.20239 1.20303 1.20555 0.78304 0.86640 0.85836 1.90672 1.47151 1.20089 1.87750 1.22314 1.04043 0.92246 0.82520 1.86263 1.79226 1.45250 1.15256 1.22283 0.74046 0.86912 0.83667 1.90927 1.43245 1.20567 1.86368 1.22526 1.08850 1.01918 0.88404 1.22871 0.88585 0.91103 0.97324 1.20223 0.96814 0.97741 0.99406 1.22067 0.99706 0.91888 0.94684 1.22377 0.95341 1.00035 1.01791 1.23285 0.95933 0.96526 0.91156 1.67535 1.34481 1.02414 1.18708 1.22730 0.90835 0.94542 0.93891 0.88485 0.92700 0.93492 0.89888 0.88767 0.95250 0.98209 0.92295 0.87318 0.86967 0.81115 0.78531 0.81484 0.81578 0.81039 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 10.24 71.98 0.74 -3.54 16 2 C 0.10 3.03 5.93 86.38 0.51 3.54 16 3 N -0.59 -26.03 2.46 -826.15 -2.03 -28.06 16 4 C 0.26 14.39 5.16 85.63 0.44 14.83 16 5 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 9 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.50 22.14 7.75 87.66 0.68 22.82 16 14 O -0.58 -31.60 16.08 15.99 0.26 -31.35 16 15 C 0.07 2.19 4.41 71.24 0.31 2.51 16 16 O -0.34 -11.55 9.65 -51.72 -0.50 -12.05 16 17 C 0.48 12.98 7.09 69.90 0.50 13.47 16 18 O -0.52 -15.22 12.27 19.43 0.24 -14.98 16 19 C -0.20 -3.47 10.05 23.59 0.24 -3.23 16 20 C 0.02 0.24 9.81 23.86 0.23 0.47 16 21 C -0.14 -2.42 4.35 -20.05 -0.09 -2.51 16 22 C -0.06 -0.76 9.95 22.78 0.23 -0.54 16 23 C -0.18 -2.29 10.10 22.32 0.23 -2.06 16 24 C 0.09 1.53 11.17 84.71 0.95 2.48 16 25 N -0.52 -12.81 10.34 -194.49 -2.01 -14.82 16 26 C 0.14 3.21 7.98 85.10 0.68 3.89 16 27 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.05 1.40 7.22 -2.39 -0.02 1.38 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 2.71 8.07 -2.38 -0.02 2.69 16 31 H 0.09 2.42 6.44 -2.38 -0.02 2.41 16 32 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 33 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.11 3.20 7.39 -2.39 -0.02 3.18 16 36 H 0.11 3.23 7.17 -2.39 -0.02 3.21 16 37 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.13 3.18 7.45 -2.91 -0.02 3.16 16 Total: -1.00 -83.72 365.71 5.64 -78.08 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.03 Total: 10.68 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.34 Total: 21.45 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.76 Total: -99.00 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: 0.00 Total: -58.38 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -83.72 5.64 -78.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910186583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.281 kcal (2) G-P(sol) polarization free energy of solvation -83.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds