Wall clock time and date at job start Tue Mar 31 2020 12:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46881 * 2 1 4 4 O 1.42899 * 109.47137 * 120.00291 * 2 1 3 5 5 C 1.34905 * 117.00059 * 270.00035 * 4 2 1 6 6 O 1.21629 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.46231 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.34921 * 120.00066 * 179.97438 * 7 5 4 9 9 C 1.47173 * 119.99744 * 180.02562 * 8 7 5 10 10 C 1.40284 * 120.58113 * 180.02562 * 9 8 7 11 11 C 1.38289 * 118.26340 * 180.02562 * 10 9 8 12 12 C 1.38399 * 119.33294 * 0.02562 * 11 10 9 13 13 N 1.31939 * 121.14280 * 359.97438 * 12 11 10 14 14 C 1.31653 * 121.90732 * 359.70268 * 13 12 11 15 15 C 1.50701 * 109.47244 * 240.00006 * 2 1 3 16 16 O 1.21277 * 120.00211 * 256.02961 * 15 2 1 17 17 N 1.34781 * 119.99525 * 76.02808 * 15 2 1 18 18 C 1.46494 * 120.00204 * 5.36936 * 17 15 2 19 19 C 1.46499 * 119.99624 * 185.36117 * 17 15 2 20 20 C 1.50702 * 109.46860 * 90.00366 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00108 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00333 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46945 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47162 * 120.00051 * 24 22 20 27 27 H 1.48496 * 109.47551 * 240.00521 * 24 22 20 28 28 H 1.09001 * 109.47525 * 306.13130 * 1 2 3 29 29 H 1.09006 * 109.47018 * 186.13383 * 1 2 3 30 30 H 1.09001 * 109.47354 * 66.13864 * 1 2 3 31 31 H 1.07994 * 119.99938 * 0.02562 * 7 5 4 32 32 H 1.08003 * 119.99867 * 0.02562 * 8 7 5 33 33 H 1.08003 * 120.87202 * 359.97438 * 10 9 8 34 34 H 1.07996 * 120.33179 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.42638 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.74021 * 180.31549 * 14 13 12 37 37 H 1.08998 * 109.47479 * 84.81893 * 18 17 15 38 38 H 1.09002 * 109.47016 * 204.81979 * 18 17 15 39 39 H 1.09000 * 109.46810 * 324.81456 * 18 17 15 40 40 H 1.08994 * 109.47566 * 210.00191 * 19 17 15 41 41 H 1.09001 * 109.47661 * 330.01052 * 19 17 15 42 42 H 0.96998 * 120.00268 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2105 0.0785 2.2679 6 8 1.9901 1.2743 2.2369 7 6 2.6967 -0.5437 3.4986 8 6 2.9014 0.2087 4.5997 9 6 3.3913 -0.4176 5.8382 10 6 3.6078 0.3530 6.9903 11 6 4.0692 -0.2846 8.1273 12 6 4.3010 -1.6486 8.0930 13 7 4.0888 -2.3494 6.9954 14 6 3.6442 -1.7917 5.8888 15 6 2.0323 -0.7104 -1.2305 16 8 2.4736 -1.8367 -1.1428 17 7 1.9912 -0.0940 -2.4284 18 6 1.5691 1.3059 -2.5177 19 6 2.3689 -0.8241 -3.6410 20 6 1.1507 -1.4916 -4.2253 21 1 0.1910 -1.3826 -3.7420 22 6 1.2610 -2.2407 -5.3776 23 7 2.4294 -2.3731 -5.9665 24 14 -0.2489 -3.0687 -6.1015 25 1 -1.4319 -2.7676 -5.2559 26 1 -0.4815 -2.5590 -7.4768 27 1 -0.0339 -4.5373 -6.1477 28 1 -0.3634 0.6059 0.8300 29 1 -0.3633 -1.0218 0.1098 30 1 -0.3634 0.4157 -0.9398 31 1 2.8928 -1.6054 3.5260 32 1 2.7057 1.2705 4.5722 33 1 3.4198 1.4165 6.9891 34 1 4.2469 0.2762 9.0330 35 1 4.6618 -2.1480 8.9800 36 1 3.4779 -2.3997 5.0118 37 1 2.4230 1.9559 -2.3266 38 1 1.1776 1.5044 -3.5154 39 1 0.7926 1.4992 -1.7776 40 1 2.7862 -0.1283 -4.3689 41 1 3.1136 -1.5803 -3.3929 42 1 2.5071 -2.9004 -6.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910190202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:40 Heat of formation + Delta-G solvation = -60.857792 kcal Electronic energy + Delta-G solvation = -25219.171340 eV Core-core repulsion = 21358.353623 eV Total energy + Delta-G solvation = -3860.817718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84459 -40.47815 -38.93618 -36.69624 -34.99077 -34.87291 -32.87072 -32.75873 -31.65009 -30.33820 -27.79659 -26.14271 -25.75477 -24.38412 -24.03346 -22.94020 -21.71068 -19.93132 -18.84542 -18.39639 -17.54522 -16.96540 -16.56438 -16.38728 -16.07277 -15.84112 -15.48332 -15.08299 -14.63105 -14.42599 -14.33832 -14.29169 -13.59264 -13.57785 -13.28072 -12.89886 -12.53866 -12.31339 -12.25153 -12.17663 -12.08339 -11.74712 -11.44666 -11.28797 -11.24265 -10.91306 -10.74366 -10.69502 -10.55887 -10.18702 -10.17372 -9.92791 -9.64891 -8.96579 -8.90332 -8.46605 -7.72293 -6.07213 -4.12500 -0.12659 0.75369 1.38351 2.49114 2.76465 3.23727 3.28442 3.36446 3.40409 3.41322 3.82651 3.95304 4.24614 4.31347 4.36038 4.41968 4.48312 4.72955 4.78556 4.87090 4.99271 5.06958 5.11566 5.24724 5.27418 5.41909 5.51384 5.54793 5.65313 5.70495 5.85949 5.86722 5.88617 6.08476 6.16112 6.24426 6.39132 6.98248 7.39539 7.46264 7.46944 7.67231 7.88998 8.18627 8.28985 8.83284 8.98427 9.52703 11.00910 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002186 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.958627 B =12805.012051 C =13304.402272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.069 3.931 3 H 0.101 0.899 4 O -0.315 6.315 5 C 0.495 3.505 6 O -0.513 6.513 7 C -0.174 4.174 8 C -0.014 4.014 9 C -0.127 4.127 10 C -0.051 4.051 11 C -0.175 4.175 12 C 0.108 3.892 13 N -0.484 5.484 14 C 0.122 3.878 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 9.012 25.892 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.230 6.230 5 C 0.342 3.658 6 O -0.404 6.404 7 C -0.193 4.193 8 C -0.033 4.033 9 C -0.130 4.130 10 C -0.077 4.077 11 C -0.195 4.195 12 C -0.049 4.049 13 N -0.192 5.192 14 C -0.035 4.035 15 C 0.294 3.706 16 O -0.396 6.396 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.126 3.874 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.208 1.208 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.174 7.755 25.717 26.887 hybrid contribution -1.045 0.673 -0.613 1.386 sum 0.129 8.428 25.104 26.482 Atomic orbital electron populations 1.22198 0.92225 1.04140 1.03764 1.22300 0.96096 0.97580 0.83032 0.88089 1.86319 1.76300 1.40955 1.19407 1.21250 0.74714 0.85167 0.84696 1.90853 1.48912 1.16009 1.84639 1.22249 1.04811 1.01820 0.90376 1.22268 0.90972 1.00243 0.89804 1.19972 1.03284 0.95229 0.94468 1.21852 0.93778 1.00512 0.91521 1.22140 1.01504 0.96368 0.99512 1.23000 0.94256 0.91355 0.96242 1.67713 1.11688 1.40173 0.99585 1.23300 0.92278 0.91648 0.96315 1.19775 0.80185 0.86835 0.83797 1.90695 1.45152 1.18400 1.85317 1.48075 1.65294 1.11912 1.07718 1.21830 0.98991 0.82660 1.03529 1.19374 0.96717 0.92088 0.79189 1.21464 0.94810 1.31381 1.09097 0.92290 1.24948 0.96282 0.96155 0.96758 1.69941 1.23155 1.40446 1.19663 0.86424 0.82777 0.79391 0.78720 1.19776 1.20954 1.20821 0.91315 0.90625 0.89531 0.83667 0.84022 0.84082 0.84238 0.82412 0.81799 0.93446 0.90084 0.92236 0.94624 0.93552 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.17 37.16 0.34 -2.05 16 2 C 0.07 1.17 2.09 -27.88 -0.06 1.11 16 3 H 0.10 1.56 6.27 -51.93 -0.33 1.24 16 4 O -0.32 -5.28 9.35 -47.67 -0.45 -5.73 16 5 C 0.50 6.93 7.84 33.94 0.27 7.20 16 6 O -0.51 -7.76 15.47 -19.36 -0.30 -8.06 16 7 C -0.17 -1.79 9.55 -37.55 -0.36 -2.15 16 8 C -0.01 -0.12 9.48 -37.13 -0.35 -0.47 16 9 C -0.13 -0.99 5.88 -104.91 -0.62 -1.61 16 10 C -0.05 -0.31 9.95 -38.79 -0.39 -0.69 16 11 C -0.18 -0.93 10.10 -39.50 -0.40 -1.33 16 12 C 0.11 0.72 11.17 -17.45 -0.19 0.53 16 13 N -0.48 -4.53 10.34 -12.83 -0.13 -4.66 16 14 C 0.12 1.06 10.59 -17.04 -0.18 0.88 16 15 C 0.51 11.04 6.95 -10.98 -0.08 10.97 16 16 O -0.52 -13.56 16.13 -13.82 -0.22 -13.79 16 17 N -0.60 -12.77 2.86 -182.96 -0.52 -13.30 16 18 C 0.07 1.17 9.79 59.84 0.59 1.76 16 19 C 0.24 6.40 5.18 -5.19 -0.03 6.38 16 20 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 24 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 31 H 0.15 1.26 6.10 -52.49 -0.32 0.94 16 32 H 0.14 1.11 7.52 -52.48 -0.39 0.71 16 33 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.17 1.21 6.19 -52.48 -0.32 0.89 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 39 H 0.06 0.79 4.92 -51.93 -0.26 0.53 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -35.93 366.37 -7.51 -43.44 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.25 Total: -1.39 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.88 Total: 6.97 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.08 Total: -43.66 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.97 Total: -27.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.93 -7.51 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910190202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.418 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds