Wall clock time and date at job start Tue Mar 31 2020 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46881 * 2 1 4 4 O 1.42899 * 109.47137 * 120.00291 * 2 1 3 5 5 C 1.34905 * 117.00059 * 270.00035 * 4 2 1 6 6 O 1.21629 * 119.99686 * 359.97438 * 5 4 2 7 7 C 1.46231 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.34921 * 120.00066 * 179.97438 * 7 5 4 9 9 C 1.47173 * 119.99744 * 180.02562 * 8 7 5 10 10 C 1.40284 * 120.58113 * 180.02562 * 9 8 7 11 11 C 1.38289 * 118.26340 * 180.02562 * 10 9 8 12 12 C 1.38399 * 119.33294 * 0.02562 * 11 10 9 13 13 N 1.31939 * 121.14280 * 359.97438 * 12 11 10 14 14 C 1.31653 * 121.90732 * 359.70268 * 13 12 11 15 15 C 1.50701 * 109.47244 * 240.00006 * 2 1 3 16 16 O 1.21277 * 120.00211 * 256.02961 * 15 2 1 17 17 N 1.34781 * 119.99525 * 76.02808 * 15 2 1 18 18 C 1.46494 * 120.00204 * 5.36936 * 17 15 2 19 19 C 1.46499 * 119.99624 * 185.36117 * 17 15 2 20 20 C 1.50702 * 109.46860 * 90.00366 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00108 * 179.97438 * 20 19 17 23 23 N 1.31515 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00333 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46945 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47162 * 120.00051 * 24 22 20 27 27 H 1.48496 * 109.47551 * 240.00521 * 24 22 20 28 28 H 1.09001 * 109.47525 * 306.13130 * 1 2 3 29 29 H 1.09006 * 109.47018 * 186.13383 * 1 2 3 30 30 H 1.09001 * 109.47354 * 66.13864 * 1 2 3 31 31 H 1.07994 * 119.99938 * 0.02562 * 7 5 4 32 32 H 1.08003 * 119.99867 * 0.02562 * 8 7 5 33 33 H 1.08003 * 120.87202 * 359.97438 * 10 9 8 34 34 H 1.07996 * 120.33179 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.42638 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.74021 * 180.31549 * 14 13 12 37 37 H 1.08998 * 109.47479 * 84.81893 * 18 17 15 38 38 H 1.09002 * 109.47016 * 204.81979 * 18 17 15 39 39 H 1.09000 * 109.46810 * 324.81456 * 18 17 15 40 40 H 1.08994 * 109.47566 * 210.00191 * 19 17 15 41 41 H 1.09001 * 109.47661 * 330.01052 * 19 17 15 42 42 H 0.96998 * 120.00268 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2105 0.0785 2.2679 6 8 1.9901 1.2743 2.2369 7 6 2.6967 -0.5437 3.4986 8 6 2.9014 0.2087 4.5997 9 6 3.3913 -0.4176 5.8382 10 6 3.6078 0.3530 6.9903 11 6 4.0692 -0.2846 8.1273 12 6 4.3010 -1.6486 8.0930 13 7 4.0888 -2.3494 6.9954 14 6 3.6442 -1.7917 5.8888 15 6 2.0323 -0.7104 -1.2305 16 8 2.4736 -1.8367 -1.1428 17 7 1.9912 -0.0940 -2.4284 18 6 1.5691 1.3059 -2.5177 19 6 2.3689 -0.8241 -3.6410 20 6 1.1507 -1.4916 -4.2253 21 1 0.1910 -1.3826 -3.7420 22 6 1.2610 -2.2407 -5.3776 23 7 2.4294 -2.3731 -5.9665 24 14 -0.2489 -3.0687 -6.1015 25 1 -1.4319 -2.7676 -5.2559 26 1 -0.4815 -2.5590 -7.4768 27 1 -0.0339 -4.5373 -6.1477 28 1 -0.3634 0.6059 0.8300 29 1 -0.3633 -1.0218 0.1098 30 1 -0.3634 0.4157 -0.9398 31 1 2.8928 -1.6054 3.5260 32 1 2.7057 1.2705 4.5722 33 1 3.4198 1.4165 6.9891 34 1 4.2469 0.2762 9.0330 35 1 4.6618 -2.1480 8.9800 36 1 3.4779 -2.3997 5.0118 37 1 2.4230 1.9559 -2.3266 38 1 1.1776 1.5044 -3.5154 39 1 0.7926 1.4992 -1.7776 40 1 2.7862 -0.1283 -4.3689 41 1 3.1136 -1.5803 -3.3929 42 1 2.5071 -2.9004 -6.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910190202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:39 Heat of formation + Delta-G solvation = -83.131569 kcal Electronic energy + Delta-G solvation = -25220.137204 eV Core-core repulsion = 21358.353623 eV Total energy + Delta-G solvation = -3861.783581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01581 -41.09579 -40.49103 -37.90799 -36.69782 -35.69406 -34.85781 -33.35981 -32.99692 -31.03143 -29.70798 -27.60202 -26.70934 -25.81901 -24.72542 -24.25359 -22.84790 -20.82847 -20.41218 -19.35136 -18.70198 -18.21371 -18.13704 -17.55328 -17.26097 -17.11176 -16.56791 -16.22005 -16.16653 -15.93956 -15.01705 -14.92734 -14.80452 -14.75407 -14.31035 -14.11792 -14.02212 -13.68361 -13.57731 -13.35565 -13.22667 -13.11834 -12.84012 -12.76276 -12.68456 -12.52356 -12.21952 -11.96857 -11.91604 -11.80768 -11.69077 -10.66857 -10.65945 -10.63171 -10.46941 -9.59790 -9.53121 -8.23803 -6.38675 -0.79702 0.26623 0.66522 1.31682 1.37223 1.39739 1.50850 1.59166 1.85898 2.33047 2.44419 2.86820 3.06352 3.35267 3.39447 3.52735 3.70822 3.77252 3.83757 3.87860 4.00871 4.07327 4.16430 4.28475 4.50187 4.53665 4.57942 4.63852 4.76726 4.84150 4.85871 4.92958 5.04309 5.07844 5.17102 5.19659 5.25583 5.31918 5.51311 5.68040 5.77680 6.02371 6.50352 6.63990 6.70569 6.93907 7.18699 7.35003 8.83999 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.002186 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.958627 B =12805.012051 C =13304.402272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.120 0.880 4 O -0.338 6.338 5 C 0.497 3.503 6 O -0.528 6.528 7 C -0.204 4.204 8 C 0.024 3.976 9 C -0.145 4.145 10 C -0.046 4.046 11 C -0.169 4.169 12 C 0.100 3.900 13 N -0.519 5.519 14 C 0.108 3.892 15 C 0.500 3.500 16 O -0.579 6.579 17 N -0.600 5.600 18 C 0.067 3.933 19 C 0.258 3.742 20 C -0.543 4.543 21 H 0.059 0.941 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.283 1.283 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.031 0.969 41 H -0.001 1.001 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 11.006 28.164 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 H 0.138 0.862 4 O -0.254 6.254 5 C 0.345 3.655 6 O -0.420 6.420 7 C -0.223 4.223 8 C 0.005 3.995 9 C -0.147 4.147 10 C -0.072 4.072 11 C -0.189 4.189 12 C -0.055 4.055 13 N -0.228 5.228 14 C -0.050 4.050 15 C 0.287 3.713 16 O -0.458 6.458 17 N -0.333 5.333 18 C -0.075 4.075 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.077 0.923 22 C -0.193 4.193 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.188 1.188 26 H -0.194 1.194 27 H -0.209 1.209 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.018 0.982 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.177 9.807 28.005 29.673 hybrid contribution -0.512 0.099 -1.119 1.235 sum -0.690 9.907 26.886 28.661 Atomic orbital electron populations 1.22199 0.90101 1.04086 1.05306 1.22148 0.97407 0.97202 0.81128 0.86197 1.86325 1.76932 1.42078 1.20037 1.21750 0.74135 0.85026 0.84591 1.90826 1.50034 1.16369 1.84779 1.22175 1.07935 1.02507 0.89664 1.22410 0.87619 1.00388 0.89133 1.19981 1.04644 0.95096 0.94945 1.22264 0.92284 1.01801 0.90802 1.22516 0.99981 0.95868 1.00497 1.23539 0.93398 0.92415 0.96178 1.67708 1.13052 1.41475 1.00549 1.23407 0.92685 0.92388 0.96479 1.20692 0.79027 0.86412 0.85169 1.90654 1.47668 1.21127 1.86379 1.48069 1.64916 1.13836 1.06444 1.22152 1.01024 0.79567 1.04726 1.18875 0.95246 0.91309 0.80867 1.21728 0.95149 1.31875 1.09412 0.92325 1.25893 0.99499 0.96693 0.97204 1.70061 1.25361 1.41167 1.20195 0.85328 0.78946 0.77885 0.78415 1.18836 1.19440 1.20886 0.88684 0.91814 0.88657 0.82998 0.82934 0.81301 0.80846 0.80138 0.81932 0.90931 0.90077 0.89044 0.95152 0.98241 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 9.17 71.98 0.66 -3.70 16 2 C 0.08 2.66 2.09 29.85 0.06 2.72 16 3 H 0.12 3.50 6.27 -2.39 -0.01 3.49 16 4 O -0.34 -11.47 9.35 -51.88 -0.49 -11.96 16 5 C 0.50 13.69 7.84 69.90 0.55 14.23 16 6 O -0.53 -15.20 15.47 19.41 0.30 -14.90 16 7 C -0.20 -4.15 9.55 23.59 0.23 -3.92 16 8 C 0.02 0.36 9.48 23.86 0.23 0.59 16 9 C -0.14 -2.02 5.88 -20.05 -0.12 -2.13 16 10 C -0.05 -0.41 9.95 22.78 0.23 -0.19 16 11 C -0.17 -1.23 10.10 22.32 0.23 -1.01 16 12 C 0.10 1.15 11.17 84.72 0.95 2.10 16 13 N -0.52 -9.40 10.34 -194.50 -2.01 -11.42 16 14 C 0.11 1.83 10.59 85.10 0.90 2.74 16 15 C 0.50 22.24 6.95 87.66 0.61 22.85 16 16 O -0.58 -31.88 16.13 15.51 0.25 -31.63 16 17 N -0.60 -26.13 2.86 -851.15 -2.43 -28.57 16 18 C 0.07 2.03 9.79 127.77 1.25 3.28 16 19 C 0.26 14.06 5.18 85.63 0.44 14.50 16 20 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 21 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 22 C 0.01 0.35 5.46 84.65 0.46 0.82 16 23 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 24 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.09 2.41 6.33 -2.39 -0.02 2.39 16 31 H 0.15 2.78 6.10 -2.91 -0.02 2.76 16 32 H 0.15 2.00 7.52 -2.91 -0.02 1.98 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 0.06 8.06 -2.91 -0.02 0.04 16 35 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 2.56 6.19 -2.91 -0.02 2.54 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 39 H 0.09 2.18 4.92 -2.39 -0.01 2.17 16 40 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 41 H 0.00 -0.03 7.36 -2.39 -0.02 -0.05 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -81.63 366.37 5.89 -75.75 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.04 Total: 9.98 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 6.91 Total: 21.93 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -4.16 Total: -95.97 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: 0.07 Total: -58.49 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -81.63 5.89 -75.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910190202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.386 kcal (2) G-P(sol) polarization free energy of solvation -81.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds