Wall clock time and date at job start Tue Mar 31 2020 12:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 O 1.42891 * 109.47217 * 120.00273 * 2 1 3 5 5 C 1.53004 * 109.47282 * 240.00510 * 2 1 3 6 6 H 1.08998 * 110.53407 * 66.37217 * 5 2 1 7 7 N 1.47313 * 110.59612 * 303.54489 * 5 2 1 8 8 C 1.34520 * 106.61925 * 241.31894 * 7 5 2 9 9 O 1.21539 * 123.77037 * 180.02562 * 8 7 5 10 10 N 1.33788 * 112.46190 * 359.97438 * 8 7 5 11 11 C 1.46496 * 124.18239 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47053 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46980 * 59.93325 * 11 10 8 14 14 C 1.50704 * 109.47153 * 65.00385 * 13 11 10 15 15 H 1.08002 * 119.99889 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99949 * 180.02562 * 14 13 11 17 17 N 1.31511 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00179 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47152 * 89.99800 * 18 16 14 20 20 H 1.48499 * 109.47140 * 210.00193 * 18 16 14 21 21 H 1.48503 * 109.46858 * 330.00067 * 18 16 14 22 22 C 1.50700 * 109.46993 * 299.93429 * 11 10 8 23 23 C 1.38235 * 120.00162 * 321.55140 * 22 11 10 24 24 C 1.38236 * 119.99954 * 179.77100 * 23 22 11 25 25 C 1.38228 * 119.99784 * 0.49961 * 24 23 22 26 26 C 1.38239 * 120.00384 * 359.75279 * 25 24 23 27 27 C 1.38226 * 119.99823 * 359.97438 * 26 25 24 28 28 C 1.34770 * 111.64214 * 0.23133 * 10 8 7 29 29 O 1.21234 * 127.15893 * 179.73312 * 28 10 8 30 30 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47104 * 299.99930 * 1 2 3 32 32 H 1.09006 * 109.47457 * 59.99647 * 1 2 3 33 33 H 0.96700 * 114.00314 * 59.99984 * 4 2 1 34 34 H 0.97004 * 126.68733 * 61.28606 * 7 5 2 35 35 H 1.08994 * 109.47095 * 305.00282 * 13 11 10 36 36 H 1.09001 * 109.46850 * 184.99804 * 13 11 10 37 37 H 0.97006 * 119.99873 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99621 * 359.97438 * 23 22 11 39 39 H 1.07999 * 119.99460 * 180.23205 * 24 23 22 40 40 H 1.08006 * 119.99882 * 179.73055 * 25 24 23 41 41 H 1.07992 * 119.99941 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00128 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 1 1.7818 -0.1596 -2.1471 7 7 1.4943 -2.0878 -1.3179 8 6 2.5468 -2.9246 -1.2801 9 8 2.4490 -4.1354 -1.3191 10 7 3.7135 -2.2752 -1.1959 11 6 5.0203 -2.9348 -1.1382 12 1 5.8052 -2.1810 -1.0736 13 6 5.2229 -3.7764 -2.3997 14 6 5.2860 -2.8711 -3.6029 15 1 5.1908 -1.8023 -3.4800 16 6 5.4644 -3.4073 -4.8605 17 7 5.5190 -2.6173 -5.9104 18 14 5.6285 -5.2559 -5.0730 19 1 4.2842 -5.8515 -5.2810 20 1 6.4855 -5.5446 -6.2509 21 1 6.2462 -5.8412 -3.8560 22 6 5.0799 -3.8262 0.0754 23 6 4.5012 -3.4175 1.2624 24 6 4.5518 -4.2373 2.3743 25 6 5.1901 -5.4613 2.3020 26 6 5.7734 -5.8678 1.1165 27 6 5.7179 -5.0505 0.0031 28 6 3.5377 -0.9394 -1.1650 29 8 4.3983 -0.0891 -1.0870 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7210 -1.5952 1.2328 34 1 0.5585 -2.3358 -1.3780 35 1 4.3901 -4.4708 -2.5108 36 1 6.1544 -4.3364 -2.3172 37 1 5.6448 -2.9945 -6.7952 38 1 4.0067 -2.4591 1.3201 39 1 4.0963 -3.9195 3.3005 40 1 5.2334 -6.0999 3.1719 41 1 6.2724 -6.8238 1.0602 42 1 6.1740 -5.3678 -0.9230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924814787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:50 Heat of formation + Delta-G solvation = -59.913254 kcal Electronic energy + Delta-G solvation = -28312.290352 eV Core-core repulsion = 24451.513593 eV Total energy + Delta-G solvation = -3860.776759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25129 -39.06971 -38.15644 -37.68975 -35.45464 -35.21117 -32.84233 -31.81409 -30.86936 -30.57787 -29.18089 -27.48613 -25.44258 -23.15181 -22.78778 -21.83008 -21.55497 -20.94997 -19.27262 -17.81687 -17.55554 -17.25250 -16.60221 -16.22657 -15.58635 -15.42364 -15.29737 -14.86285 -14.66293 -14.42246 -14.14878 -14.06143 -13.72525 -13.43998 -13.13806 -12.92852 -12.79476 -12.72695 -12.30202 -12.26450 -12.00104 -11.50175 -11.42106 -10.99417 -10.88413 -10.72795 -10.64804 -10.44104 -10.08563 -9.88444 -9.71659 -9.29811 -9.22030 -9.04246 -8.62089 -8.57027 -8.35651 -6.09001 -4.08133 1.60755 1.70389 2.05805 2.62250 3.30386 3.33191 3.37183 3.40213 3.50396 4.02775 4.11981 4.23001 4.32210 4.41831 4.84061 4.88946 5.02769 5.13247 5.16587 5.24074 5.25161 5.35463 5.40617 5.58410 5.64914 5.77392 5.78818 5.82712 6.03675 6.07714 6.15150 6.28445 6.38437 6.71337 6.76361 6.92607 6.95327 7.05673 7.22985 7.28952 7.30670 7.58421 7.68187 7.83461 8.43147 8.55248 8.93272 9.52237 11.03792 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.006965 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.747804 B = 4018.922172 C = 5839.463058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H 0.122 0.878 4 O -0.553 6.553 5 C 0.056 3.944 6 H 0.132 0.868 7 N -0.735 5.735 8 C 0.708 3.292 9 O -0.530 6.530 10 N -0.545 5.545 11 C 0.201 3.799 12 H 0.112 0.888 13 C -0.028 4.028 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.079 4.079 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.100 4.100 28 C 0.539 3.461 29 O -0.467 6.467 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.374 0.626 34 H 0.434 0.566 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 1.253 14.744 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.140 0.860 4 O -0.358 6.358 5 C -0.054 4.054 6 H 0.149 0.851 7 N -0.402 5.402 8 C 0.409 3.591 9 O -0.402 6.402 10 N -0.289 5.289 11 C 0.100 3.900 12 H 0.130 0.870 13 C -0.065 4.065 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.118 4.118 28 C 0.325 3.675 29 O -0.337 6.337 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.278 0.722 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.490 1.601 14.669 17.024 hybrid contribution -0.726 -1.507 -0.722 1.822 sum -9.217 0.095 13.947 16.718 Atomic orbital electron populations 1.22465 0.95061 1.02992 1.03616 1.22131 0.93811 0.96875 0.82386 0.86034 1.86637 1.77058 1.29142 1.42952 1.22932 0.92845 0.86742 1.02841 0.85096 1.45552 1.08697 1.05410 1.80520 1.15801 0.80745 0.85478 0.77089 1.90979 1.84857 1.10587 1.53789 1.46155 1.08291 1.08026 1.66408 1.20215 0.81033 0.94645 0.94094 0.87021 1.20114 0.98255 0.96403 0.91759 1.20969 1.50610 0.94646 0.89705 0.91047 1.24937 0.94385 0.97781 0.95829 1.69908 1.50035 1.35049 0.98724 0.86822 0.78536 0.86316 0.77926 1.20208 1.21334 1.18897 1.20212 0.97771 0.95416 0.94633 1.20960 0.99926 0.99532 0.92586 1.20993 1.00193 0.94793 0.98069 1.21050 0.99139 0.96653 0.97736 1.21102 1.00168 0.99557 0.93124 1.21258 0.98621 0.93069 0.98880 1.20329 0.90181 0.82559 0.74413 1.90769 1.49198 1.47678 1.46020 0.91978 0.90907 0.90839 0.77820 0.72220 0.94153 0.94433 0.92682 0.86605 0.86578 0.86651 0.86310 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.33 37.15 0.35 -0.84 16 2 C 0.11 1.04 3.60 -26.73 -0.10 0.94 16 3 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 4 O -0.55 -6.23 12.61 -35.23 -0.44 -6.67 16 5 C 0.06 0.69 3.62 -68.20 -0.25 0.44 16 6 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 7 N -0.74 -9.28 5.36 -59.19 -0.32 -9.60 16 8 C 0.71 12.70 7.76 -88.03 -0.68 12.02 16 9 O -0.53 -11.22 15.69 5.33 0.08 -11.14 16 10 N -0.55 -10.30 1.48 -114.83 -0.17 -10.47 16 11 C 0.20 4.14 2.50 -69.08 -0.17 3.97 16 12 H 0.11 2.39 7.64 -51.93 -0.40 1.99 16 13 C -0.03 -0.66 2.70 -27.88 -0.08 -0.74 16 14 C -0.52 -14.63 9.39 -34.44 -0.32 -14.95 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 C -0.08 -1.45 4.75 -104.62 -0.50 -1.95 16 23 C -0.11 -1.80 9.07 -39.58 -0.36 -2.16 16 24 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 25 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 26 C -0.12 -1.79 10.05 -39.59 -0.40 -2.18 16 27 C -0.10 -1.74 9.12 -39.58 -0.36 -2.11 16 28 C 0.54 9.53 7.10 -10.55 -0.07 9.46 16 29 O -0.47 -9.51 17.51 5.60 0.10 -9.42 16 30 H 0.06 0.37 7.04 -51.93 -0.37 0.00 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 3.68 8.67 45.56 0.39 4.07 16 34 H 0.43 4.13 8.12 -40.82 -0.33 3.79 16 35 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 36 H 0.04 0.88 5.37 -51.93 -0.28 0.60 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.12 1.80 7.52 -52.49 -0.39 1.41 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.13 2.36 5.88 -52.49 -0.31 2.05 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -35.15 348.62 -7.76 -42.91 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.54 Total: 8.91 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.83 Total: -0.31 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.29 Total: -46.79 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.26 Total: -27.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.15 -7.76 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924814787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.005 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds