Wall clock time and date at job start Tue Mar 31 2020 12:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 O 1.42891 * 109.47217 * 120.00273 * 2 1 3 5 5 C 1.53004 * 109.47282 * 240.00510 * 2 1 3 6 6 H 1.08998 * 110.53407 * 66.37217 * 5 2 1 7 7 N 1.47313 * 110.59612 * 303.54489 * 5 2 1 8 8 C 1.34520 * 106.61925 * 241.31894 * 7 5 2 9 9 O 1.21539 * 123.77037 * 180.02562 * 8 7 5 10 10 N 1.33788 * 112.46190 * 359.97438 * 8 7 5 11 11 C 1.46496 * 124.18239 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47053 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46980 * 59.93325 * 11 10 8 14 14 C 1.50704 * 109.47153 * 65.00385 * 13 11 10 15 15 H 1.08002 * 119.99889 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99949 * 180.02562 * 14 13 11 17 17 N 1.31511 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00179 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47152 * 89.99800 * 18 16 14 20 20 H 1.48499 * 109.47140 * 210.00193 * 18 16 14 21 21 H 1.48503 * 109.46858 * 330.00067 * 18 16 14 22 22 C 1.50700 * 109.46993 * 299.93429 * 11 10 8 23 23 C 1.38235 * 120.00162 * 321.55140 * 22 11 10 24 24 C 1.38236 * 119.99954 * 179.77100 * 23 22 11 25 25 C 1.38228 * 119.99784 * 0.49961 * 24 23 22 26 26 C 1.38239 * 120.00384 * 359.75279 * 25 24 23 27 27 C 1.38226 * 119.99823 * 359.97438 * 26 25 24 28 28 C 1.34770 * 111.64214 * 0.23133 * 10 8 7 29 29 O 1.21234 * 127.15893 * 179.73312 * 28 10 8 30 30 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47104 * 299.99930 * 1 2 3 32 32 H 1.09006 * 109.47457 * 59.99647 * 1 2 3 33 33 H 0.96700 * 114.00314 * 59.99984 * 4 2 1 34 34 H 0.97004 * 126.68733 * 61.28606 * 7 5 2 35 35 H 1.08994 * 109.47095 * 305.00282 * 13 11 10 36 36 H 1.09001 * 109.46850 * 184.99804 * 13 11 10 37 37 H 0.97006 * 119.99873 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99621 * 359.97438 * 23 22 11 39 39 H 1.07999 * 119.99460 * 180.23205 * 24 23 22 40 40 H 1.08006 * 119.99882 * 179.73055 * 25 24 23 41 41 H 1.07992 * 119.99941 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00128 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 1 1.7818 -0.1596 -2.1471 7 7 1.4943 -2.0878 -1.3179 8 6 2.5468 -2.9246 -1.2801 9 8 2.4490 -4.1354 -1.3191 10 7 3.7135 -2.2752 -1.1959 11 6 5.0203 -2.9348 -1.1382 12 1 5.8052 -2.1810 -1.0736 13 6 5.2229 -3.7764 -2.3997 14 6 5.2860 -2.8711 -3.6029 15 1 5.1908 -1.8023 -3.4800 16 6 5.4644 -3.4073 -4.8605 17 7 5.5190 -2.6173 -5.9104 18 14 5.6285 -5.2559 -5.0730 19 1 4.2842 -5.8515 -5.2810 20 1 6.4855 -5.5446 -6.2509 21 1 6.2462 -5.8412 -3.8560 22 6 5.0799 -3.8262 0.0754 23 6 4.5012 -3.4175 1.2624 24 6 4.5518 -4.2373 2.3743 25 6 5.1901 -5.4613 2.3020 26 6 5.7734 -5.8678 1.1165 27 6 5.7179 -5.0505 0.0031 28 6 3.5377 -0.9394 -1.1650 29 8 4.3983 -0.0891 -1.0870 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7210 -1.5952 1.2328 34 1 0.5585 -2.3358 -1.3780 35 1 4.3901 -4.4708 -2.5108 36 1 6.1544 -4.3364 -2.3172 37 1 5.6448 -2.9945 -6.7952 38 1 4.0067 -2.4591 1.3201 39 1 4.0963 -3.9195 3.3005 40 1 5.2334 -6.0999 3.1719 41 1 6.2724 -6.8238 1.0602 42 1 6.1740 -5.3678 -0.9230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924814787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:49 Heat of formation + Delta-G solvation = -86.217616 kcal Electronic energy + Delta-G solvation = -28313.430995 eV Core-core repulsion = 24451.513593 eV Total energy + Delta-G solvation = -3861.917402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60104 -40.29323 -39.59209 -38.73474 -36.97042 -36.51898 -34.81334 -33.22710 -31.86792 -31.70644 -30.86296 -28.56262 -27.06219 -24.57234 -24.14997 -23.05591 -22.78636 -22.24864 -20.73300 -19.30290 -19.13153 -18.44602 -18.05907 -17.50398 -16.82480 -16.67732 -16.62619 -16.28123 -16.06553 -15.88132 -15.54805 -15.29365 -14.98152 -14.88731 -14.57837 -14.33344 -14.30456 -13.87671 -13.62320 -13.44841 -13.16335 -12.85226 -12.67030 -12.49821 -12.22795 -12.08989 -12.00728 -11.83510 -11.71712 -11.58378 -11.46953 -11.05069 -10.82084 -10.64760 -10.35141 -9.79961 -9.61401 -8.35322 -6.39070 0.39441 0.51817 0.66896 1.28996 1.29772 1.32066 1.41945 2.08124 2.16496 2.29310 2.89159 2.92035 3.00745 3.33897 3.39129 3.67625 3.95265 4.00239 4.11936 4.15435 4.20192 4.28738 4.33021 4.42137 4.50483 4.56850 4.65122 4.74148 4.87253 5.01471 5.03589 5.11708 5.17942 5.29513 5.30383 5.48643 5.59663 5.63503 5.71135 5.85945 6.13153 6.15544 6.18881 6.43576 6.53706 6.64721 7.19674 7.24333 8.80804 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.006965 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.747804 B = 4018.922172 C = 5839.463058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.126 0.874 4 O -0.568 6.568 5 C 0.068 3.932 6 H 0.155 0.845 7 N -0.706 5.706 8 C 0.702 3.298 9 O -0.565 6.565 10 N -0.554 5.554 11 C 0.203 3.797 12 H 0.087 0.913 13 C -0.015 4.015 14 C -0.522 4.522 15 H 0.030 0.970 16 C 0.016 3.984 17 N -0.943 5.943 18 Si 0.939 3.061 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.245 1.245 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.125 4.125 28 C 0.523 3.477 29 O -0.506 6.506 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.380 0.620 34 H 0.452 0.548 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.267 0.733 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 -0.208 17.069 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 H 0.143 0.857 4 O -0.374 6.374 5 C -0.041 4.041 6 H 0.172 0.828 7 N -0.374 5.374 8 C 0.403 3.597 9 O -0.441 6.441 10 N -0.297 5.297 11 C 0.102 3.898 12 H 0.105 0.895 13 C -0.052 4.052 14 C -0.560 4.560 15 H 0.049 0.951 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.168 1.168 22 C -0.102 4.102 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.143 4.143 28 C 0.312 3.688 29 O -0.378 6.378 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.228 0.772 34 H 0.300 0.700 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.163 0.837 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.295 0.162 17.011 19.885 hybrid contribution -0.165 -0.961 -1.393 1.700 sum -10.460 -0.798 15.618 18.814 Atomic orbital electron populations 1.22417 0.91855 1.04020 1.04930 1.22265 0.96033 0.96172 0.80127 0.85659 1.86627 1.77674 1.29693 1.43435 1.23115 0.88643 0.86683 1.05661 0.82823 1.45364 1.08508 1.04722 1.78837 1.15948 0.81303 0.85388 0.77048 1.90942 1.85378 1.12088 1.55662 1.46237 1.08205 1.08780 1.66453 1.19860 0.81741 0.94107 0.94137 0.89479 1.19903 0.97846 0.95762 0.91725 1.21158 1.49876 0.93405 0.91573 0.95129 1.25807 0.94135 1.02792 0.95445 1.70043 1.51560 1.37305 0.99365 0.85819 0.78721 0.80321 0.78842 1.20082 1.20367 1.16830 1.20036 1.00050 0.95768 0.94355 1.21008 1.00023 1.00039 0.92705 1.21384 0.99377 0.94481 0.98290 1.21516 0.97160 0.96614 0.98357 1.21425 0.99831 1.00039 0.92577 1.21286 0.99683 0.93650 0.99707 1.21280 0.92515 0.81757 0.73267 1.90730 1.51021 1.48371 1.47703 0.91081 0.90025 0.89121 0.77187 0.69989 0.95284 0.93965 0.92416 0.86827 0.83335 0.82751 0.83662 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.33 71.98 0.67 -1.01 16 2 C 0.11 1.97 3.60 30.59 0.11 2.08 16 3 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 4 O -0.57 -12.03 12.61 -148.98 -1.88 -13.91 16 5 C 0.07 1.61 3.62 44.37 0.16 1.77 16 6 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 7 N -0.71 -17.00 5.36 -459.61 -2.46 -19.46 16 8 C 0.70 25.39 7.76 179.44 1.39 26.78 16 9 O -0.57 -24.14 15.69 -3.84 -0.06 -24.20 16 10 N -0.55 -21.76 1.48 -754.47 -1.12 -22.88 16 11 C 0.20 8.86 2.50 44.25 0.11 8.97 16 12 H 0.09 4.09 7.64 -2.38 -0.02 4.07 16 13 C -0.01 -0.73 2.70 29.85 0.08 -0.65 16 14 C -0.52 -30.77 9.39 25.60 0.24 -30.53 16 15 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 16 C 0.02 0.95 5.47 84.65 0.46 1.41 16 17 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 18 Si 0.94 45.88 27.47 68.60 1.88 47.76 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 H -0.24 -11.08 6.54 99.48 0.65 -10.43 16 22 C -0.10 -3.77 4.75 -19.86 -0.09 -3.87 16 23 C -0.12 -3.78 9.07 22.27 0.20 -3.57 16 24 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 25 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 26 C -0.12 -3.28 10.05 22.27 0.22 -3.05 16 27 C -0.12 -4.35 9.12 22.27 0.20 -4.15 16 28 C 0.52 19.21 7.10 87.94 0.62 19.84 16 29 O -0.51 -21.87 17.51 -2.89 -0.05 -21.92 16 30 H 0.07 0.58 7.04 -2.39 -0.02 0.56 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.38 6.87 8.67 -74.06 -0.64 6.23 16 34 H 0.45 7.54 8.12 -92.71 -0.75 6.79 16 35 H 0.03 1.51 5.98 -2.39 -0.01 1.50 16 36 H 0.04 2.04 5.37 -2.39 -0.01 2.03 16 37 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 38 H 0.11 3.55 7.52 -2.91 -0.02 3.53 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 42 H 0.12 4.28 5.88 -2.91 -0.02 4.26 16 Total: -1.00 -81.15 348.62 1.08 -80.07 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.37 Total: 25.05 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.84 Total: 8.80 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.28 Total: -101.66 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -1.99 Total: -60.03 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -81.15 1.08 -80.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924814787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.144 kcal (2) G-P(sol) polarization free energy of solvation -81.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds