Wall clock time and date at job start Tue Mar 31 2020 12:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35713 * 116.99894 * 2 1 4 4 C 1.41928 * 126.88101 * 180.32248 * 3 2 1 5 5 C 1.35268 * 103.95910 * 180.14106 * 4 3 2 6 6 C 1.50704 * 126.70896 * 179.87895 * 5 4 3 7 7 H 1.09002 * 109.47221 * 19.71297 * 6 5 4 8 8 C 1.52994 * 109.47077 * 259.71140 * 6 5 4 9 9 N 1.46903 * 109.47386 * 139.71031 * 6 5 4 10 10 C 1.46896 * 110.99987 * 205.00407 * 9 6 5 11 11 C 1.50701 * 109.47050 * 179.97438 * 10 9 6 12 12 C 1.38302 * 119.93101 * 89.99407 * 11 10 9 13 13 C 1.38106 * 120.07107 * 180.02562 * 12 11 10 14 14 C 1.38879 * 119.92571 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.06541 * 180.02562 * 14 13 12 16 16 C 1.34831 * 117.00188 * 354.46649 * 15 14 13 17 17 H 1.08005 * 119.99910 * 5.05947 * 16 15 14 18 18 C 1.38653 * 120.00325 * 185.05796 * 16 15 14 19 19 N 1.31556 * 119.99986 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99759 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47054 * 90.00219 * 20 18 16 22 22 H 1.48502 * 109.47026 * 209.99915 * 20 18 16 23 23 H 1.48498 * 109.47177 * 330.00281 * 20 18 16 24 24 C 1.38871 * 119.86478 * 0.27488 * 14 13 12 25 25 C 1.38102 * 119.92968 * 359.49233 * 24 14 13 26 26 O 1.34080 * 106.58606 * 359.61442 * 5 4 3 27 27 N 1.20922 * 111.71443 * 0.26283 * 26 5 4 28 28 H 1.08998 * 109.47158 * 60.00323 * 1 2 3 29 29 H 1.09003 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47028 * 299.99730 * 1 2 3 31 31 H 1.08002 * 128.01885 * 0.03540 * 4 3 2 32 32 H 1.09003 * 109.47306 * 59.99899 * 8 6 5 33 33 H 1.09003 * 109.47127 * 179.97438 * 8 6 5 34 34 H 1.08995 * 109.47444 * 299.99837 * 8 6 5 35 35 H 1.00895 * 111.00134 * 81.04576 * 9 6 5 36 36 H 1.09000 * 109.47303 * 59.99863 * 10 9 6 37 37 H 1.09000 * 109.46921 * 299.99445 * 10 9 6 38 38 H 1.08001 * 119.96675 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.03520 * 179.97438 * 13 12 11 40 40 H 0.97002 * 119.99567 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03616 * 179.72161 * 24 14 13 42 42 H 1.08003 * 119.96565 * 180.22670 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4528 -0.0064 5 6 3.5395 2.8021 -0.0002 6 6 4.8087 3.6147 -0.0005 7 1 5.6352 2.9976 -0.3529 8 6 5.1040 4.0998 1.4201 9 7 4.6485 4.7728 -0.8900 10 6 5.9499 5.2387 -1.3872 11 6 5.7457 6.4244 -2.2947 12 6 5.7479 7.7038 -1.7694 13 6 5.5605 8.7924 -2.5983 14 6 5.3703 8.6014 -3.9607 15 8 5.1863 9.6695 -4.7781 16 6 5.0845 10.8791 -4.1912 17 1 5.2312 10.9764 -3.1256 18 6 4.7914 11.9981 -4.9556 19 7 4.6925 13.1784 -4.3830 20 14 4.5383 11.8300 -6.7987 21 1 3.1036 11.5690 -7.0796 22 1 4.9539 13.0866 -7.4721 23 1 5.3561 10.7007 -7.3097 24 6 5.3634 7.3152 -4.4842 25 6 5.5561 6.2309 -3.6509 26 8 2.2850 3.2752 0.0003 27 7 1.4700 2.3820 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.2447 0.7288 -0.0128 32 1 5.2229 3.2405 2.0802 33 1 6.0222 4.6872 1.4200 34 1 4.2776 4.7169 1.7725 35 1 4.1504 5.5181 -0.4270 36 1 6.4352 4.4360 -1.9425 37 1 6.5778 5.5292 -0.5450 38 1 5.8963 7.8517 -0.7099 39 1 5.5619 9.7912 -2.1875 40 1 4.4878 13.9613 -4.9179 41 1 5.2112 7.1631 -5.5426 42 1 5.5545 5.2306 -4.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925367166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:31 Heat of formation + Delta-G solvation = 31.508294 kcal Electronic energy + Delta-G solvation = -25145.576803 eV Core-core repulsion = 21288.764380 eV Total energy + Delta-G solvation = -3856.812423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.01962 -39.28341 -39.05266 -37.80557 -36.40194 -33.45423 -32.58673 -32.17255 -30.38016 -30.23643 -28.56825 -27.85795 -25.72729 -24.44731 -23.59362 -23.20592 -22.06200 -21.05084 -20.44718 -18.15393 -17.88772 -17.80418 -17.28471 -16.91895 -16.05091 -15.71401 -15.27096 -15.17099 -14.93039 -14.56533 -14.24855 -13.94808 -13.79521 -13.69152 -13.48969 -13.13691 -12.71268 -12.61370 -12.51182 -12.30604 -12.12229 -12.11858 -11.99229 -11.84328 -11.29310 -11.24093 -10.81466 -10.76252 -10.66293 -10.16537 -9.76675 -9.41351 -9.39764 -8.88499 -8.60692 -8.26355 -7.34776 -6.42941 -4.09536 1.26732 2.07424 2.12494 2.16273 2.53036 2.96431 3.21678 3.25799 3.40036 3.89498 4.08288 4.23009 4.47305 4.57413 4.64839 4.75358 4.82737 4.84234 4.85548 4.88895 5.09625 5.15108 5.17541 5.20997 5.27292 5.38456 5.44169 5.56734 5.63411 5.69205 5.78091 5.79421 6.11514 6.32556 6.55894 6.73276 6.74672 6.79932 7.03026 7.17920 7.25192 7.31524 7.60266 7.78556 8.02495 8.10486 8.92374 9.54712 10.64587 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.002251 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.894503 B =12435.650997 C =13037.134872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.287 6.287 3 C 0.205 3.795 4 C -0.241 4.241 5 C 0.024 3.976 6 C 0.161 3.839 7 H 0.112 0.888 8 C -0.184 4.184 9 N -0.679 5.679 10 C 0.118 3.882 11 C -0.180 4.180 12 C -0.065 4.065 13 C -0.222 4.222 14 C 0.163 3.837 15 O -0.217 6.217 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.194 4.194 25 C -0.052 4.052 26 O 0.112 5.888 27 N -0.412 5.412 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.176 0.824 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.352 0.648 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.279 0.721 41 H 0.116 0.884 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 -23.326 10.908 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.193 6.193 3 C 0.007 3.993 4 C -0.263 4.263 5 C -0.041 4.041 6 C 0.050 3.950 7 H 0.130 0.870 8 C -0.243 4.243 9 N -0.311 5.311 10 C -0.010 4.010 11 C -0.181 4.181 12 C -0.084 4.084 13 C -0.241 4.241 14 C 0.110 3.890 15 O -0.122 6.122 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.214 4.214 25 C -0.071 4.071 26 O 0.052 5.948 27 N -0.137 5.137 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.193 0.807 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.172 0.828 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.994 -23.309 10.065 25.468 hybrid contribution 0.519 0.157 0.129 0.558 sum -1.475 -23.152 10.194 25.340 Atomic orbital electron populations 1.23048 0.76939 1.03920 1.02407 1.86166 1.22504 1.21102 1.89558 1.21987 0.90879 0.85702 1.00749 1.21674 0.94277 0.95458 1.14881 1.24331 0.88161 0.92766 0.98828 1.20092 0.89186 0.92809 0.92932 0.86978 1.22547 1.03081 1.02493 0.96171 1.60588 1.20891 1.09752 1.39844 1.20694 0.88677 0.95445 0.96156 1.19110 1.11938 0.93077 0.93968 1.20645 0.97668 0.91868 0.98228 1.21238 1.09519 0.99826 0.93536 1.19155 0.92716 0.87613 0.89505 1.83576 1.79573 1.14344 1.34679 1.20766 1.49388 0.80573 0.95766 0.87608 1.24475 0.95598 0.93692 1.00270 1.69647 1.46421 0.98565 1.37036 0.86179 0.79386 0.78052 0.83276 1.19854 1.20789 1.18360 1.20225 1.11128 0.90032 0.99987 1.20469 0.96915 0.97160 0.92560 1.84830 1.12117 1.29632 1.68221 1.74163 1.15947 0.96684 1.26945 0.92202 0.87778 0.92339 0.80670 0.91416 0.90863 0.91439 0.82760 0.90713 0.94632 0.87537 0.85003 0.91038 0.86577 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.33 16 2 O -0.29 -3.13 10.57 -18.85 -0.20 -3.33 16 3 C 0.20 2.46 8.01 -16.66 -0.13 2.33 16 4 C -0.24 -2.38 11.10 -39.23 -0.44 -2.82 16 5 C 0.02 0.25 6.32 -35.36 -0.22 0.02 16 6 C 0.16 1.32 3.07 -68.86 -0.21 1.10 16 7 H 0.11 0.73 7.80 -51.93 -0.40 0.33 16 8 C -0.18 -1.22 9.14 37.15 0.34 -0.88 16 9 N -0.68 -7.21 6.22 -109.22 -0.68 -7.89 16 10 C 0.12 1.29 5.61 -4.98 -0.03 1.26 16 11 C -0.18 -2.71 5.40 -104.58 -0.56 -3.28 16 12 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 13 C -0.22 -4.62 9.17 -39.39 -0.36 -4.98 16 14 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.22 -5.68 8.59 0.04 0.00 -5.68 16 16 C -0.39 -10.88 9.95 30.89 0.31 -10.57 16 17 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 19 N -0.88 -25.25 13.96 55.48 0.77 -24.47 16 20 Si 0.91 21.62 28.62 -169.99 -4.86 16.76 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.19 -3.78 9.99 -39.40 -0.39 -4.18 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 O 0.11 1.43 11.19 17.07 0.19 1.62 16 27 N -0.41 -5.49 11.54 30.38 0.35 -5.14 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 7.45 -51.93 -0.39 0.06 16 34 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.35 3.88 8.46 -39.29 -0.33 3.55 16 36 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 37 H 0.04 0.34 7.38 -51.93 -0.38 -0.04 16 38 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 40 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -31.14 363.42 -6.14 -37.28 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.44 Total: 3.66 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.74 Total: -18.29 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.45 Total: -37.51 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.01 Total: -7.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.14 -6.14 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925367166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.790 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds