Wall clock time and date at job start Tue Mar 31 2020 12:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35713 * 116.99894 * 2 1 4 4 C 1.41928 * 126.88101 * 180.32248 * 3 2 1 5 5 C 1.35268 * 103.95910 * 180.14106 * 4 3 2 6 6 C 1.50704 * 126.70896 * 179.87895 * 5 4 3 7 7 H 1.09002 * 109.47221 * 19.71297 * 6 5 4 8 8 C 1.52994 * 109.47077 * 259.71140 * 6 5 4 9 9 N 1.46903 * 109.47386 * 139.71031 * 6 5 4 10 10 C 1.46896 * 110.99987 * 205.00407 * 9 6 5 11 11 C 1.50701 * 109.47050 * 179.97438 * 10 9 6 12 12 C 1.38302 * 119.93101 * 89.99407 * 11 10 9 13 13 C 1.38106 * 120.07107 * 180.02562 * 12 11 10 14 14 C 1.38879 * 119.92571 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.06541 * 180.02562 * 14 13 12 16 16 C 1.34831 * 117.00188 * 354.46649 * 15 14 13 17 17 H 1.08005 * 119.99910 * 5.05947 * 16 15 14 18 18 C 1.38653 * 120.00325 * 185.05796 * 16 15 14 19 19 N 1.31556 * 119.99986 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99759 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47054 * 90.00219 * 20 18 16 22 22 H 1.48502 * 109.47026 * 209.99915 * 20 18 16 23 23 H 1.48498 * 109.47177 * 330.00281 * 20 18 16 24 24 C 1.38871 * 119.86478 * 0.27488 * 14 13 12 25 25 C 1.38102 * 119.92968 * 359.49233 * 24 14 13 26 26 O 1.34080 * 106.58606 * 359.61442 * 5 4 3 27 27 N 1.20922 * 111.71443 * 0.26283 * 26 5 4 28 28 H 1.08998 * 109.47158 * 60.00323 * 1 2 3 29 29 H 1.09003 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47028 * 299.99730 * 1 2 3 31 31 H 1.08002 * 128.01885 * 0.03540 * 4 3 2 32 32 H 1.09003 * 109.47306 * 59.99899 * 8 6 5 33 33 H 1.09003 * 109.47127 * 179.97438 * 8 6 5 34 34 H 1.08995 * 109.47444 * 299.99837 * 8 6 5 35 35 H 1.00895 * 111.00134 * 81.04576 * 9 6 5 36 36 H 1.09000 * 109.47303 * 59.99863 * 10 9 6 37 37 H 1.09000 * 109.46921 * 299.99445 * 10 9 6 38 38 H 1.08001 * 119.96675 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.03520 * 179.97438 * 13 12 11 40 40 H 0.97002 * 119.99567 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03616 * 179.72161 * 24 14 13 42 42 H 1.08003 * 119.96565 * 180.22670 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4528 -0.0064 5 6 3.5395 2.8021 -0.0002 6 6 4.8087 3.6147 -0.0005 7 1 5.6352 2.9976 -0.3529 8 6 5.1040 4.0998 1.4201 9 7 4.6485 4.7728 -0.8900 10 6 5.9499 5.2387 -1.3872 11 6 5.7457 6.4244 -2.2947 12 6 5.7479 7.7038 -1.7694 13 6 5.5605 8.7924 -2.5983 14 6 5.3703 8.6014 -3.9607 15 8 5.1863 9.6695 -4.7781 16 6 5.0845 10.8791 -4.1912 17 1 5.2312 10.9764 -3.1256 18 6 4.7914 11.9981 -4.9556 19 7 4.6925 13.1784 -4.3830 20 14 4.5383 11.8300 -6.7987 21 1 3.1036 11.5690 -7.0796 22 1 4.9539 13.0866 -7.4721 23 1 5.3561 10.7007 -7.3097 24 6 5.3634 7.3152 -4.4842 25 6 5.5561 6.2309 -3.6509 26 8 2.2850 3.2752 0.0003 27 7 1.4700 2.3820 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.2447 0.7288 -0.0128 32 1 5.2229 3.2405 2.0802 33 1 6.0222 4.6872 1.4200 34 1 4.2776 4.7169 1.7725 35 1 4.1504 5.5181 -0.4270 36 1 6.4352 4.4360 -1.9425 37 1 6.5778 5.5292 -0.5450 38 1 5.8963 7.8517 -0.7099 39 1 5.5619 9.7912 -2.1875 40 1 4.4878 13.9613 -4.9179 41 1 5.2112 7.1631 -5.5426 42 1 5.5545 5.2306 -4.0580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925367166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:30 Heat of formation + Delta-G solvation = 9.037627 kcal Electronic energy + Delta-G solvation = -25146.551204 eV Core-core repulsion = 21288.764380 eV Total energy + Delta-G solvation = -3857.786825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.86562 -40.87443 -39.82154 -38.98324 -37.63273 -34.53791 -34.21555 -33.29521 -31.76785 -31.35570 -29.59054 -28.50790 -27.43633 -25.61474 -24.40197 -24.10553 -23.58799 -21.86958 -21.79300 -19.81070 -19.13212 -18.87041 -18.63973 -17.70683 -16.99963 -16.60522 -16.45881 -16.21897 -15.91134 -15.86603 -15.63115 -15.39316 -15.16255 -14.91364 -14.43168 -14.27832 -14.11168 -13.99875 -13.83351 -13.16117 -13.08745 -12.92444 -12.83673 -12.82500 -12.59157 -12.42547 -12.36473 -12.05703 -11.99091 -11.88594 -11.24084 -10.89345 -10.51408 -10.26458 -9.75072 -9.39016 -8.95022 -8.49205 -6.21199 0.46706 0.62838 0.67921 1.27753 1.31378 1.35546 1.51895 1.79324 2.26118 2.28468 2.74536 3.00726 3.17190 3.24347 3.42727 3.84140 3.94863 4.05047 4.09415 4.17226 4.21984 4.24617 4.27472 4.34920 4.50896 4.54939 4.60119 4.64386 4.75329 4.80933 4.84983 4.94594 4.97885 5.05985 5.28880 5.31774 5.40675 5.62141 5.80216 5.84771 5.94320 5.96246 6.03751 6.30628 6.39168 6.85603 7.28142 7.61529 8.62390 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.002251 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.894503 B =12435.650997 C =13037.134872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.191 3.809 4 C -0.237 4.237 5 C 0.023 3.977 6 C 0.168 3.832 7 H 0.140 0.860 8 C -0.180 4.180 9 N -0.693 5.693 10 C 0.122 3.878 11 C -0.149 4.149 12 C -0.064 4.064 13 C -0.240 4.240 14 C 0.118 3.882 15 O -0.248 6.248 16 C -0.397 4.397 17 H 0.082 0.918 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.198 4.198 25 C -0.049 4.049 26 O 0.091 5.909 27 N -0.440 5.440 28 H 0.052 0.948 29 H 0.136 0.864 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.348 0.652 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.123 0.877 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -27.186 11.465 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.203 6.203 3 C -0.007 4.007 4 C -0.259 4.259 5 C -0.042 4.042 6 C 0.057 3.943 7 H 0.157 0.843 8 C -0.239 4.239 9 N -0.325 5.325 10 C -0.006 4.006 11 C -0.150 4.150 12 C -0.082 4.082 13 C -0.259 4.259 14 C 0.069 3.931 15 O -0.156 6.156 16 C -0.473 4.473 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.217 4.217 25 C -0.068 4.068 26 O 0.032 5.968 27 N -0.169 5.169 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.842 -27.212 10.649 29.234 hybrid contribution 0.190 0.975 0.201 1.014 sum -0.651 -26.237 10.850 28.400 Atomic orbital electron populations 1.23267 0.75631 1.05886 1.01937 1.86161 1.23904 1.20735 1.89453 1.22429 0.92021 0.85759 1.00477 1.22079 0.94012 0.95862 1.13973 1.24821 0.87913 0.93285 0.98153 1.20260 0.88755 0.91890 0.93406 0.84274 1.22513 1.03125 1.02937 0.95297 1.60471 1.20570 1.10334 1.41141 1.20740 0.89386 0.94083 0.96361 1.19684 1.06939 0.94037 0.94352 1.20983 0.96513 0.91392 0.99345 1.21273 1.10747 1.00175 0.93681 1.19722 0.94978 0.88028 0.90385 1.83516 1.82580 1.14205 1.35307 1.20705 1.49556 0.82035 0.95029 0.90072 1.25278 0.95701 0.93328 1.04711 1.69730 1.48763 0.99297 1.38667 0.85224 0.79296 0.78244 0.77983 1.19272 1.19155 1.18760 1.20536 1.10595 0.89482 1.01053 1.20941 0.95251 0.97729 0.92834 1.84783 1.13191 1.29925 1.68867 1.74149 1.16913 0.97374 1.28434 0.92914 0.84622 0.92571 0.77784 0.90232 0.89668 0.92556 0.83227 0.88393 0.92188 0.84405 0.87649 0.90635 0.85909 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.73 113.37 1.22 1.61 16 2 O -0.30 -6.03 10.57 -90.35 -0.95 -6.98 16 3 C 0.19 4.30 8.01 85.79 0.69 4.99 16 4 C -0.24 -4.00 11.10 22.50 0.25 -3.75 16 5 C 0.02 0.40 6.32 25.00 0.16 0.56 16 6 C 0.17 1.99 3.07 44.17 0.14 2.13 16 7 H 0.14 0.96 7.80 -2.39 -0.02 0.95 16 8 C -0.18 -1.67 9.14 71.98 0.66 -1.01 16 9 N -0.69 -11.78 6.22 -499.46 -3.11 -14.89 16 10 C 0.12 2.00 5.61 85.56 0.48 2.47 16 11 C -0.15 -3.94 5.40 -19.84 -0.11 -4.04 16 12 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 13 C -0.24 -10.27 9.17 22.39 0.21 -10.06 16 14 C 0.12 5.50 6.65 22.58 0.15 5.65 16 15 O -0.25 -13.64 8.59 -22.78 -0.20 -13.84 16 16 C -0.40 -23.57 9.95 67.92 0.68 -22.90 16 17 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 18 C 0.01 0.47 5.49 84.83 0.47 0.93 16 19 N -0.92 -55.58 13.96 21.61 0.30 -55.28 16 20 Si 0.97 46.05 28.62 68.60 1.96 48.01 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 24 C -0.20 -7.51 9.99 22.39 0.22 -7.28 16 25 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 26 O 0.09 2.21 11.19 71.26 0.80 3.00 16 27 N -0.44 -11.45 11.54 -172.59 -1.99 -13.44 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.62 7.45 -2.39 -0.02 0.60 16 34 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 35 H 0.35 6.53 8.46 -89.70 -0.76 5.77 16 36 H 0.10 1.28 8.00 -2.39 -0.02 1.26 16 37 H 0.06 0.77 7.38 -2.39 -0.02 0.75 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 39 H 0.11 5.02 5.64 -2.91 -0.02 5.01 16 40 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -73.07 363.42 2.74 -70.33 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.29 Total: 16.80 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 5.63 Total: -33.72 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -4.80 Total: -83.61 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.35 Total: -17.82 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.96 Total: 48.01 kcal Total: -73.07 2.74 -70.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925367166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.371 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds