Wall clock time and date at job start Tue Mar 31 2020 13:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47052 * 2 1 4 4 C 1.34529 * 126.68616 * 269.68618 * 3 2 1 5 5 O 1.21535 * 123.77550 * 0.02807 * 4 3 2 6 6 N 1.33801 * 112.45711 * 179.87256 * 4 3 2 7 7 C 1.40203 * 124.17743 * 180.13881 * 6 4 3 8 8 C 1.38907 * 120.03160 * 174.20688 * 7 6 4 9 9 C 1.38160 * 120.07664 * 180.02562 * 8 7 6 10 10 C 1.38165 * 120.13246 * 359.97438 * 9 8 7 11 11 C 1.38907 * 120.06197 * 359.97438 * 10 9 8 12 12 O 1.35747 * 120.03501 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00407 * 5.74794 * 12 11 10 14 14 H 1.08003 * 119.99809 * 5.38515 * 13 12 11 15 15 C 1.38657 * 120.00145 * 185.38120 * 13 12 11 16 16 N 1.31556 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99713 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47152 * 90.00079 * 17 15 13 19 19 H 1.48509 * 109.47138 * 209.99836 * 17 15 13 20 20 H 1.48498 * 109.47550 * 329.99784 * 17 15 13 21 21 C 1.38670 * 120.02957 * 353.93944 * 7 6 4 22 22 C 1.34767 * 111.63991 * 0.40662 * 6 4 3 23 23 O 1.21238 * 127.15374 * 179.73338 * 22 6 4 24 24 C 1.47308 * 126.69766 * 89.99601 * 3 2 1 25 25 C 1.53001 * 110.59641 * 298.49441 * 24 3 2 26 26 C 1.53001 * 110.59624 * 61.43514 * 24 3 2 27 27 H 1.09006 * 109.46705 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47140 * 60.00787 * 1 2 3 29 29 H 1.08997 * 109.47548 * 300.00440 * 1 2 3 30 30 H 1.08997 * 109.47140 * 119.99213 * 2 1 3 31 31 H 1.08997 * 109.47548 * 239.99560 * 2 1 3 32 32 H 1.08009 * 119.96301 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.93949 * 180.02562 * 9 8 7 34 34 H 1.08007 * 119.97161 * 179.97438 * 10 9 8 35 35 H 0.96998 * 119.99928 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.06996 * 359.97438 * 21 7 6 37 37 H 1.09000 * 109.47437 * 59.99658 * 25 24 3 38 38 H 1.09001 * 109.46982 * 179.97438 * 25 24 3 39 39 H 1.08996 * 109.47142 * 299.99253 * 25 24 3 40 40 H 1.09004 * 109.47000 * 60.00820 * 26 24 3 41 41 H 1.09006 * 109.47318 * 180.02562 * 26 24 3 42 42 H 1.08998 * 109.47249 * 300.00545 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2917 2.1370 -1.0788 5 8 2.1617 1.7518 -2.2242 6 7 2.7198 3.3613 -0.7499 7 6 3.0708 4.3493 -1.6807 8 6 3.3896 5.6302 -1.2479 9 6 3.7351 6.6047 -2.1644 10 6 3.7653 6.3085 -3.5136 11 6 3.4487 5.0292 -3.9524 12 8 3.4791 4.7387 -5.2781 13 6 3.9386 5.6994 -6.1050 14 1 4.3424 6.6146 -5.6977 15 6 3.8927 5.5125 -7.4781 16 7 4.3406 6.4502 -8.2849 17 14 3.1949 3.9294 -8.1823 18 1 1.7353 4.0877 -8.4050 19 1 3.8626 3.6254 -9.4736 20 1 3.4322 2.8163 -7.2284 21 6 3.1056 4.0472 -3.0336 22 6 2.7772 3.5254 0.5865 23 8 3.1289 4.5176 1.1879 24 6 2.3116 2.2112 1.1811 25 6 1.0494 2.4175 2.0209 26 6 3.4217 1.5775 2.0220 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.3672 5.8647 -0.1938 33 1 3.9829 7.5998 -1.8254 34 1 4.0354 7.0724 -4.2277 35 1 4.3089 6.3193 -9.2455 36 1 2.8627 3.0508 -3.3720 37 1 0.6722 1.4505 2.3536 38 1 1.2870 3.0326 2.8888 39 1 0.2899 2.9161 1.4188 40 1 4.3263 1.4869 1.4206 41 1 3.6235 2.2053 2.8900 42 1 3.1060 0.5887 2.3547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927189392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:30 Heat of formation + Delta-G solvation = -22.494500 kcal Electronic energy + Delta-G solvation = -27190.916075 eV Core-core repulsion = 23331.761915 eV Total energy + Delta-G solvation = -3859.154160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.92025 -39.19370 -38.86732 -37.55542 -36.41002 -35.23896 -33.22049 -32.37245 -31.07645 -29.62898 -28.72519 -27.97398 -25.44079 -24.58433 -24.35159 -22.37209 -21.78806 -20.41125 -20.33954 -18.34977 -17.54887 -17.07806 -16.79716 -16.25235 -16.04238 -15.43645 -15.26537 -14.80126 -14.48080 -14.38375 -14.16593 -14.07046 -13.83978 -13.65865 -13.22419 -13.00607 -12.95656 -12.75813 -12.63334 -12.38088 -12.28812 -12.21207 -11.98242 -11.82824 -11.62607 -11.30923 -11.14570 -10.92080 -10.38014 -10.28423 -10.11713 -9.70933 -9.34747 -9.29462 -8.85828 -7.97552 -7.37676 -6.40390 -4.07064 1.40506 1.88880 1.91607 2.20754 2.69949 3.10795 3.26030 3.30126 3.47165 3.66165 4.13134 4.27585 4.34813 4.48007 4.51781 4.81325 4.87357 4.96042 5.02685 5.06549 5.09461 5.10315 5.20983 5.27995 5.34646 5.42861 5.55198 5.61216 5.65310 5.73015 5.88965 5.93270 6.05695 6.18167 6.27209 6.42407 6.69856 6.83495 7.10106 7.20405 7.28053 7.40485 7.55463 7.80236 8.01627 8.07424 8.94929 9.57230 10.66917 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.003847 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.345891 B = 7276.434073 C = 8524.566568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.147 3.853 3 N -0.619 5.619 4 C 0.697 3.303 5 O -0.518 6.518 6 N -0.511 5.511 7 C 0.160 3.840 8 C -0.219 4.219 9 C -0.060 4.060 10 C -0.223 4.223 11 C 0.173 3.827 12 O -0.211 6.211 13 C -0.390 4.390 14 H 0.107 0.893 15 C 0.065 3.935 16 N -0.878 5.878 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.257 1.257 21 C -0.203 4.203 22 C 0.528 3.472 23 O -0.453 6.453 24 C 0.119 3.881 25 C -0.145 4.145 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.280 0.720 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 -12.168 22.556 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 N -0.359 5.359 4 C 0.400 3.600 5 O -0.390 6.390 6 N -0.248 5.248 7 C 0.070 3.930 8 C -0.240 4.240 9 C -0.079 4.079 10 C -0.243 4.243 11 C 0.119 3.881 12 O -0.116 6.116 13 C -0.465 4.465 14 H 0.125 0.875 15 C -0.138 4.138 16 N -0.516 5.516 17 Si 0.728 3.272 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.181 1.181 21 C -0.224 4.224 22 C 0.315 3.685 23 O -0.322 6.322 24 C 0.030 3.970 25 C -0.203 4.203 26 C -0.203 4.203 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.936 -12.094 21.848 25.667 hybrid contribution -0.235 -0.357 -0.529 0.680 sum -6.171 -12.451 21.318 25.448 Atomic orbital electron populations 1.22310 0.95412 1.02680 1.03062 1.21293 0.94366 0.77871 1.03786 1.47911 1.69195 1.14275 1.04509 1.15907 0.78345 0.80237 0.85497 1.90917 1.56078 1.73781 1.18179 1.43705 1.59081 1.13612 1.08387 1.17221 1.01695 0.86856 0.87252 1.20898 1.10551 0.91401 1.01102 1.20638 0.96971 0.97982 0.92271 1.21425 1.08999 0.97565 0.96296 1.18772 0.92904 0.91923 0.84465 1.83599 1.73801 1.41700 1.12460 1.20784 1.39753 0.98637 0.87336 0.87524 1.24451 0.96183 0.98570 0.94621 1.69646 1.44678 1.32981 1.04272 0.86209 0.79319 0.83223 0.78426 1.19828 1.20730 1.18111 1.20545 1.10580 1.01714 0.89524 1.20791 0.76693 0.89387 0.81608 1.90703 1.43385 1.31950 1.66114 1.21515 0.98514 0.88483 0.88490 1.22029 0.94692 1.03733 0.99804 1.21969 0.96627 1.01788 0.99879 0.91006 0.91766 0.92056 0.89632 0.89083 0.84477 0.86250 0.84524 0.91022 0.82662 0.90153 0.89792 0.91365 0.91315 0.89675 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 10.11 37.16 0.38 -0.81 16 2 C 0.15 1.10 6.57 -4.04 -0.03 1.08 16 3 N -0.62 -6.68 2.47 -165.10 -0.41 -7.09 16 4 C 0.70 11.08 8.23 -88.01 -0.72 10.35 16 5 O -0.52 -9.99 14.32 5.33 0.08 -9.91 16 6 N -0.51 -8.54 2.83 -64.37 -0.18 -8.73 16 7 C 0.16 3.17 6.56 -83.62 -0.55 2.63 16 8 C -0.22 -4.15 9.31 -39.36 -0.37 -4.52 16 9 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 10 C -0.22 -4.98 9.13 -39.36 -0.36 -5.34 16 11 C 0.17 4.23 6.64 -39.13 -0.26 3.97 16 12 O -0.21 -5.82 8.58 0.07 0.00 -5.82 16 13 C -0.39 -11.22 9.90 30.89 0.31 -10.91 16 14 H 0.11 3.10 5.52 -52.48 -0.29 2.81 16 15 C 0.07 1.87 5.49 -17.52 -0.10 1.77 16 16 N -0.88 -25.66 13.96 55.48 0.77 -24.89 16 17 Si 0.90 22.36 28.62 -169.99 -4.86 17.50 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.20 -4.59 9.20 -39.22 -0.36 -4.95 16 22 C 0.53 7.33 6.85 -10.56 -0.07 7.26 16 23 O -0.45 -6.93 15.06 5.59 0.08 -6.85 16 24 C 0.12 1.12 1.14 -132.10 -0.15 0.97 16 25 C -0.14 -0.98 8.07 37.16 0.30 -0.68 16 26 C -0.14 -0.98 8.79 37.16 0.33 -0.65 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.35 6.28 -51.93 -0.33 0.03 16 30 H 0.09 0.37 7.36 -51.93 -0.38 -0.01 16 31 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 32 H 0.14 2.44 5.36 -52.48 -0.28 2.16 16 33 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.14 3.13 5.71 -52.48 -0.30 2.83 16 35 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.16 3.66 5.18 -52.49 -0.27 3.38 16 37 H 0.08 0.36 7.01 -51.93 -0.36 0.00 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.34 7.43 -51.93 -0.39 -0.04 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -33.37 346.28 -6.46 -39.84 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.11 Total: 2.12 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.05 Total: -1.38 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.19 Total: -40.71 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.16 Total: -22.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.37 -6.46 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927189392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.344 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds