Wall clock time and date at job start Tue Mar 31 2020 13:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47052 * 2 1 4 4 C 1.34529 * 126.68616 * 269.68618 * 3 2 1 5 5 O 1.21535 * 123.77550 * 0.02807 * 4 3 2 6 6 N 1.33801 * 112.45711 * 179.87256 * 4 3 2 7 7 C 1.40203 * 124.17743 * 180.13881 * 6 4 3 8 8 C 1.38907 * 120.03160 * 174.20688 * 7 6 4 9 9 C 1.38160 * 120.07664 * 180.02562 * 8 7 6 10 10 C 1.38165 * 120.13246 * 359.97438 * 9 8 7 11 11 C 1.38907 * 120.06197 * 359.97438 * 10 9 8 12 12 O 1.35747 * 120.03501 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00407 * 5.74794 * 12 11 10 14 14 H 1.08003 * 119.99809 * 5.38515 * 13 12 11 15 15 C 1.38657 * 120.00145 * 185.38120 * 13 12 11 16 16 N 1.31556 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99713 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47152 * 90.00079 * 17 15 13 19 19 H 1.48509 * 109.47138 * 209.99836 * 17 15 13 20 20 H 1.48498 * 109.47550 * 329.99784 * 17 15 13 21 21 C 1.38670 * 120.02957 * 353.93944 * 7 6 4 22 22 C 1.34767 * 111.63991 * 0.40662 * 6 4 3 23 23 O 1.21238 * 127.15374 * 179.73338 * 22 6 4 24 24 C 1.47308 * 126.69766 * 89.99601 * 3 2 1 25 25 C 1.53001 * 110.59641 * 298.49441 * 24 3 2 26 26 C 1.53001 * 110.59624 * 61.43514 * 24 3 2 27 27 H 1.09006 * 109.46705 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47140 * 60.00787 * 1 2 3 29 29 H 1.08997 * 109.47548 * 300.00440 * 1 2 3 30 30 H 1.08997 * 109.47140 * 119.99213 * 2 1 3 31 31 H 1.08997 * 109.47548 * 239.99560 * 2 1 3 32 32 H 1.08009 * 119.96301 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.93949 * 180.02562 * 9 8 7 34 34 H 1.08007 * 119.97161 * 179.97438 * 10 9 8 35 35 H 0.96998 * 119.99928 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.06996 * 359.97438 * 21 7 6 37 37 H 1.09000 * 109.47437 * 59.99658 * 25 24 3 38 38 H 1.09001 * 109.46982 * 179.97438 * 25 24 3 39 39 H 1.08996 * 109.47142 * 299.99253 * 25 24 3 40 40 H 1.09004 * 109.47000 * 60.00820 * 26 24 3 41 41 H 1.09006 * 109.47318 * 180.02562 * 26 24 3 42 42 H 1.08998 * 109.47249 * 300.00545 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2917 2.1370 -1.0788 5 8 2.1617 1.7518 -2.2242 6 7 2.7198 3.3613 -0.7499 7 6 3.0708 4.3493 -1.6807 8 6 3.3896 5.6302 -1.2479 9 6 3.7351 6.6047 -2.1644 10 6 3.7653 6.3085 -3.5136 11 6 3.4487 5.0292 -3.9524 12 8 3.4791 4.7387 -5.2781 13 6 3.9386 5.6994 -6.1050 14 1 4.3424 6.6146 -5.6977 15 6 3.8927 5.5125 -7.4781 16 7 4.3406 6.4502 -8.2849 17 14 3.1949 3.9294 -8.1823 18 1 1.7353 4.0877 -8.4050 19 1 3.8626 3.6254 -9.4736 20 1 3.4322 2.8163 -7.2284 21 6 3.1056 4.0472 -3.0336 22 6 2.7772 3.5254 0.5865 23 8 3.1289 4.5176 1.1879 24 6 2.3116 2.2112 1.1811 25 6 1.0494 2.4175 2.0209 26 6 3.4217 1.5775 2.0220 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.3672 5.8647 -0.1938 33 1 3.9829 7.5998 -1.8254 34 1 4.0354 7.0724 -4.2277 35 1 4.3089 6.3193 -9.2455 36 1 2.8627 3.0508 -3.3720 37 1 0.6722 1.4505 2.3536 38 1 1.2870 3.0326 2.8888 39 1 0.2899 2.9161 1.4188 40 1 4.3263 1.4869 1.4206 41 1 3.6235 2.2053 2.8900 42 1 3.1060 0.5887 2.3547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927189392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:29 Heat of formation + Delta-G solvation = -43.471495 kcal Electronic energy + Delta-G solvation = -27191.825706 eV Core-core repulsion = 23331.761915 eV Total energy + Delta-G solvation = -3860.063791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.05971 -40.96639 -40.06076 -38.97769 -37.78585 -36.56282 -34.51436 -33.93538 -32.24068 -31.22948 -30.09768 -28.50577 -27.39576 -25.79384 -25.45180 -23.68210 -23.13159 -21.70762 -21.48401 -20.07772 -19.39082 -18.23868 -18.04458 -17.52858 -17.25255 -17.00334 -16.55301 -16.23735 -15.86978 -15.73869 -15.60985 -15.51951 -14.80604 -14.76957 -14.57963 -14.35612 -14.28036 -13.79736 -13.72715 -13.54165 -13.39369 -13.23026 -13.11720 -12.82029 -12.78922 -12.66726 -12.48166 -12.20085 -11.97346 -11.84737 -11.71859 -11.24132 -10.96888 -10.94273 -10.21912 -9.63758 -9.17380 -8.55039 -6.27865 0.06910 0.45944 0.47262 0.80133 1.26893 1.30430 1.48622 1.75587 1.82648 2.24633 2.67068 2.69533 2.94699 3.00372 3.42243 3.71113 3.81480 3.93323 4.03548 4.22959 4.26461 4.29329 4.30908 4.45591 4.52791 4.56660 4.62374 4.66431 4.71745 4.81536 4.85203 4.97670 5.08259 5.10277 5.17582 5.27040 5.35403 5.36698 5.42525 5.52661 5.67175 5.76337 5.99957 6.04159 6.19141 6.78914 6.85286 7.51298 8.56107 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.003847 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.345891 B = 7276.434073 C = 8524.566568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 N -0.600 5.600 4 C 0.685 3.315 5 O -0.564 6.564 6 N -0.524 5.524 7 C 0.165 3.835 8 C -0.202 4.202 9 C -0.046 4.046 10 C -0.234 4.234 11 C 0.143 3.857 12 O -0.241 6.241 13 C -0.402 4.402 14 H 0.090 0.910 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 0.962 3.038 18 H -0.266 1.266 19 H -0.260 1.260 20 H -0.272 1.272 21 C -0.215 4.215 22 C 0.519 3.481 23 O -0.468 6.468 24 C 0.128 3.872 25 C -0.142 4.142 26 C -0.142 4.142 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.287 0.713 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -14.014 26.754 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.019 3.981 3 N -0.339 5.339 4 C 0.388 3.612 5 O -0.440 6.440 6 N -0.261 5.261 7 C 0.074 3.926 8 C -0.222 4.222 9 C -0.065 4.065 10 C -0.253 4.253 11 C 0.093 3.907 12 O -0.148 6.148 13 C -0.478 4.478 14 H 0.107 0.893 15 C -0.181 4.181 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.184 1.184 20 H -0.197 1.197 21 C -0.236 4.236 22 C 0.309 3.691 23 O -0.337 6.337 24 C 0.040 3.960 25 C -0.199 4.199 26 C -0.199 4.199 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.151 0.849 31 H 0.095 0.905 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.867 -13.965 26.143 30.425 hybrid contribution 0.026 0.211 -1.453 1.469 sum -6.841 -13.754 24.690 29.079 Atomic orbital electron populations 1.22283 0.94628 1.03925 1.02126 1.21720 0.94993 0.75981 1.05407 1.48180 1.67382 1.14914 1.03392 1.16231 0.78464 0.80403 0.86088 1.90880 1.58234 1.74536 1.20358 1.43955 1.59539 1.13521 1.09109 1.17373 1.00016 0.88241 0.87009 1.21249 1.08265 0.90672 1.02031 1.21046 0.94963 0.99874 0.90592 1.21467 1.09635 0.96486 0.97756 1.19215 0.94237 0.93512 0.83785 1.83550 1.75767 1.41711 1.13737 1.20776 1.40425 0.98507 0.88101 0.89303 1.25160 0.96623 1.01501 0.94794 1.69704 1.46328 1.34629 1.04840 0.85352 0.79122 0.79038 0.78048 1.19064 1.18413 1.19669 1.20548 1.11459 1.00862 0.90748 1.21747 0.75849 0.91052 0.80456 1.90674 1.44019 1.33083 1.65959 1.21821 1.00834 0.85417 0.87918 1.22121 0.92568 1.05909 0.99320 1.22068 0.94753 1.03773 0.99332 0.88703 0.95239 0.90383 0.84916 0.90542 0.82358 0.82171 0.85713 0.90360 0.84068 0.86700 0.88263 0.92830 0.92816 0.88233 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.11 71.98 0.73 -1.10 16 2 C 0.14 1.63 6.57 86.38 0.57 2.20 16 3 N -0.60 -11.63 2.47 -794.68 -1.96 -13.59 16 4 C 0.69 21.79 8.23 179.44 1.48 23.26 16 5 O -0.56 -22.81 14.32 -3.83 -0.05 -22.87 16 6 N -0.52 -17.30 2.83 -594.81 -1.68 -18.98 16 7 C 0.17 6.61 6.56 38.07 0.25 6.86 16 8 C -0.20 -7.38 9.31 22.41 0.21 -7.18 16 9 C -0.05 -1.72 10.03 22.23 0.22 -1.50 16 10 C -0.23 -10.78 9.13 22.41 0.20 -10.57 16 11 C 0.14 7.39 6.64 22.56 0.15 7.54 16 12 O -0.24 -14.10 8.58 -22.68 -0.19 -14.30 16 13 C -0.40 -24.50 9.90 67.92 0.67 -23.83 16 14 H 0.09 5.54 5.52 -2.91 -0.02 5.52 16 15 C 0.02 1.11 5.49 84.83 0.47 1.58 16 16 N -0.91 -55.33 13.96 21.61 0.30 -55.03 16 17 Si 0.96 47.74 28.62 68.60 1.96 49.70 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 21 C -0.22 -10.20 9.20 22.50 0.21 -9.99 16 22 C 0.52 13.36 6.85 87.94 0.60 13.96 16 23 O -0.47 -13.14 15.06 -2.90 -0.04 -13.18 16 24 C 0.13 1.96 1.14 2.98 0.00 1.96 16 25 C -0.14 -1.27 8.07 71.98 0.58 -0.69 16 26 C -0.14 -1.25 8.79 71.98 0.63 -0.62 16 27 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.57 6.28 -2.39 -0.02 0.55 16 30 H 0.13 0.39 7.36 -2.39 -0.02 0.37 16 31 H 0.08 1.19 8.02 -2.39 -0.02 1.17 16 32 H 0.16 5.21 5.36 -2.91 -0.02 5.20 16 33 H 0.16 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.13 6.03 5.71 -2.91 -0.02 6.02 16 35 H 0.29 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.14 7.13 5.18 -2.91 -0.02 7.11 16 37 H 0.11 0.30 7.01 -2.39 -0.02 0.29 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.12 0.23 7.43 -2.39 -0.02 0.21 16 Total: -1.00 -79.28 346.28 6.36 -72.92 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.06 Total: 13.45 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.97 Total: 1.89 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.34 Total: -87.60 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.29 Total: -50.35 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.96 Total: 49.70 kcal Total: -79.28 6.36 -72.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927189392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.449 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds