Wall clock time and date at job start Tue Mar 31 2020 12:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.82416 * 2 1 4 4 C 1.51505 * 109.82353 * 120.94370 * 2 1 3 5 5 O 1.20755 * 121.02157 * 345.70419 * 4 2 1 6 6 C 1.51324 * 117.95183 * 165.68731 * 4 2 1 7 7 C 1.53234 * 108.65450 * 307.39984 * 6 4 2 8 8 C 1.52612 * 109.50040 * 56.05091 * 7 6 4 9 9 N 1.46877 * 109.54057 * 301.85978 * 8 7 6 10 10 C 1.34776 * 120.71794 * 237.05765 * 9 8 7 11 11 O 1.21583 * 120.00133 * 186.42341 * 10 9 8 12 12 N 1.34777 * 119.99399 * 6.42282 * 10 9 8 13 13 C 1.39943 * 119.99467 * 174.72333 * 12 10 9 14 14 C 1.38959 * 120.03770 * 30.46602 * 13 12 10 15 15 C 1.38160 * 120.06730 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.14039 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.06697 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.02983 * 180.02562 * 17 16 15 19 19 C 1.34834 * 116.99705 * 187.63132 * 18 17 16 20 20 H 1.08003 * 120.00241 * 5.92020 * 19 18 17 21 21 C 1.38649 * 120.00135 * 185.91254 * 19 18 17 22 22 N 1.31555 * 120.00383 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99804 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47068 * 89.99703 * 23 21 19 25 25 H 1.48500 * 109.47329 * 209.99769 * 23 21 19 26 26 H 1.48503 * 109.47338 * 329.99837 * 23 21 19 27 27 C 1.38706 * 120.03408 * 210.19689 * 13 12 10 28 28 H 1.09002 * 109.47284 * 158.07634 * 1 2 3 29 29 H 1.09005 * 109.47190 * 278.07752 * 1 2 3 30 30 H 1.09001 * 109.46750 * 38.07775 * 1 2 3 31 31 H 1.09002 * 109.61154 * 67.15105 * 6 4 2 32 32 H 1.09002 * 109.60504 * 187.65311 * 6 4 2 33 33 H 1.08990 * 109.47907 * 176.16989 * 7 6 4 34 34 H 1.09006 * 109.47543 * 296.18828 * 7 6 4 35 35 H 1.09001 * 109.40406 * 181.81950 * 8 7 6 36 36 H 1.09008 * 109.34201 * 61.85743 * 8 7 6 37 37 H 0.96996 * 120.00856 * 354.44125 * 12 10 9 38 38 H 1.07996 * 119.96714 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.93039 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.96904 * 179.97438 * 16 15 14 41 41 H 0.97000 * 120.00414 * 179.97438 * 22 21 19 42 42 H 1.08004 * 120.06884 * 359.96900 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 6 2.0438 -0.7329 1.2224 5 8 1.3115 -0.9896 2.1476 6 6 3.5028 -1.1335 1.2481 7 6 3.8197 -1.9125 -0.0328 8 6 3.4533 -1.0654 -1.2482 9 7 2.0292 -0.7107 -1.1885 10 6 1.1963 -1.0341 -2.1976 11 8 0.0482 -0.6340 -2.1901 12 7 1.6363 -1.8009 -3.2149 13 6 0.7446 -2.2285 -4.2051 14 6 -0.3496 -1.4412 -4.5427 15 6 -1.2306 -1.8630 -5.5198 16 6 -1.0266 -3.0678 -6.1647 17 6 0.0659 -3.8587 -5.8325 18 8 0.2659 -5.0421 -6.4669 19 6 1.2489 -5.8330 -5.9915 20 1 1.7715 -5.5602 -5.0865 21 6 1.5890 -6.9967 -6.6642 22 7 2.5484 -7.7682 -6.2006 23 14 0.6855 -7.4684 -8.2297 24 1 1.3852 -6.8817 -9.4009 25 1 0.6585 -8.9475 -8.3592 26 1 -0.7053 -6.9509 -8.1738 27 6 0.9552 -3.4358 -4.8546 28 1 -0.3634 -0.9534 -0.3837 29 1 -0.3634 0.1444 1.0175 30 1 -0.3633 0.8090 -0.6338 31 1 4.1265 -0.2409 1.2971 32 1 3.6936 -1.7642 2.1164 33 1 4.8833 -2.1492 -0.0605 34 1 3.2412 -2.8363 -0.0490 35 1 3.6491 -1.6332 -2.1578 36 1 4.0549 -0.1563 -1.2493 37 1 2.5716 -2.0531 -3.2629 38 1 -0.5115 -0.4988 -4.0407 39 1 -2.0805 -1.2496 -5.7801 40 1 -1.7173 -3.3949 -6.9278 41 1 2.7861 -8.5825 -6.6711 42 1 1.8076 -4.0472 -4.5974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929742322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:49 Heat of formation + Delta-G solvation = -32.248768 kcal Electronic energy + Delta-G solvation = -26634.984599 eV Core-core repulsion = 22775.407462 eV Total energy + Delta-G solvation = -3859.577137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29323 -39.80302 -38.88678 -37.12934 -36.37962 -34.64116 -33.29795 -32.37640 -31.34838 -29.31882 -28.56040 -27.47220 -25.29867 -24.85990 -22.60305 -22.20596 -21.75197 -20.30290 -19.39263 -18.40729 -17.79795 -17.49444 -16.58212 -16.40591 -15.79289 -15.32775 -15.25376 -15.08871 -14.94746 -14.63300 -14.15157 -14.01742 -13.74049 -13.48873 -13.35404 -13.08646 -12.81787 -12.53737 -12.29325 -12.23525 -12.17104 -11.86549 -11.77263 -11.53951 -11.43462 -11.09568 -10.93585 -10.73927 -10.26330 -10.18510 -9.95617 -9.52464 -9.19235 -8.85015 -8.81868 -7.77932 -7.26699 -6.43674 -4.10746 1.45410 1.96502 2.29902 2.43808 3.11627 3.21653 3.25204 3.40497 3.57410 3.69337 4.22899 4.28665 4.32066 4.45904 4.52376 4.76167 4.84047 4.89587 4.96983 5.03872 5.06797 5.13121 5.31783 5.52211 5.60291 5.65516 5.68566 5.93639 5.94432 5.99605 6.02248 6.15496 6.24078 6.39213 6.49686 6.64001 6.90769 7.06382 7.10777 7.21848 7.26388 7.60898 7.76293 7.85812 8.02036 8.49014 8.92287 9.55306 10.64181 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.003285 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.506001 B = 8522.709303 C = 9642.261883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.120 3.880 3 H 0.101 0.899 4 C 0.351 3.649 5 O -0.438 6.438 6 C -0.169 4.169 7 C -0.132 4.132 8 C 0.103 3.897 9 N -0.625 5.625 10 C 0.710 3.290 11 O -0.555 6.555 12 N -0.678 5.678 13 C 0.194 3.806 14 C -0.203 4.203 15 C -0.065 4.065 16 C -0.202 4.202 17 C 0.175 3.825 18 O -0.217 6.217 19 C -0.389 4.389 20 H 0.104 0.896 21 C 0.064 3.936 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.247 4.247 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.402 0.598 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.675 15.582 10.827 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.118 0.882 4 C 0.224 3.776 5 O -0.308 6.308 6 C -0.207 4.207 7 C -0.171 4.171 8 C -0.020 4.020 9 N -0.366 5.366 10 C 0.412 3.588 11 O -0.431 6.431 12 N -0.327 5.327 13 C 0.100 3.900 14 C -0.223 4.223 15 C -0.084 4.084 16 C -0.222 4.222 17 C 0.122 3.878 18 O -0.122 6.122 19 C -0.464 4.464 20 H 0.121 0.879 21 C -0.139 4.139 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.269 4.269 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.240 0.760 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.467 15.419 11.171 19.353 hybrid contribution 0.688 -0.575 -0.586 1.071 sum 4.155 14.844 10.585 18.699 Atomic orbital electron populations 1.22119 0.90402 1.05957 1.01320 1.21753 0.98148 0.95861 0.82685 0.88172 1.25307 0.90575 0.75080 0.86666 1.90421 1.60041 1.43416 1.36933 1.22320 0.95178 1.02660 1.00497 1.21853 1.03345 0.99196 0.92683 1.21651 0.81257 0.99903 0.99173 1.47307 1.08602 1.62109 1.18592 1.15742 0.84322 0.79270 0.79434 1.90939 1.17090 1.57331 1.77742 1.42841 1.12245 1.53348 1.24269 1.17261 0.91297 0.92673 0.88775 1.20970 0.97473 1.02039 1.01856 1.20580 0.98007 0.94954 0.94862 1.20262 0.99332 0.96774 1.05864 1.18781 0.92532 0.85665 0.90790 1.83623 1.51659 1.24654 1.52286 1.20706 1.13016 1.02409 1.10303 0.87911 1.24451 0.95688 0.94925 0.98880 1.69639 1.28093 1.13940 1.40303 0.86186 0.81323 0.77406 0.82043 1.19920 1.20821 1.18265 1.20856 1.04771 0.96838 1.04462 0.89690 0.92394 0.90588 0.88017 0.88889 0.88845 0.90531 0.89405 0.90187 0.76032 0.84661 0.86499 0.86478 0.91095 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.62 37.16 0.28 -1.49 16 2 C 0.12 1.20 3.75 -68.30 -0.26 0.95 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.35 3.51 6.69 -28.33 -0.19 3.32 16 5 O -0.44 -5.89 16.48 6.00 0.10 -5.79 16 6 C -0.17 -1.09 6.14 -27.46 -0.17 -1.25 16 7 C -0.13 -0.82 6.07 -26.81 -0.16 -0.99 16 8 C 0.10 0.71 6.30 -4.04 -0.03 0.68 16 9 N -0.63 -6.58 2.98 -172.07 -0.51 -7.09 16 10 C 0.71 10.21 7.82 -86.92 -0.68 9.53 16 11 O -0.55 -9.46 9.44 5.29 0.05 -9.41 16 12 N -0.68 -9.95 5.27 -14.24 -0.08 -10.02 16 13 C 0.19 3.57 6.38 -83.71 -0.53 3.04 16 14 C -0.20 -3.71 8.74 -39.34 -0.34 -4.05 16 15 C -0.07 -1.16 10.03 -39.64 -0.40 -1.55 16 16 C -0.20 -4.04 9.99 -39.36 -0.39 -4.43 16 17 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16 18 O -0.22 -5.64 8.58 0.03 0.00 -5.64 16 19 C -0.39 -10.73 9.87 30.88 0.30 -10.42 16 20 H 0.10 2.88 5.59 -52.48 -0.29 2.59 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -24.97 13.96 55.48 0.77 -24.19 16 23 Si 0.90 21.41 28.62 -169.99 -4.86 16.54 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.25 -5.19 9.02 -39.21 -0.35 -5.54 16 28 H 0.08 1.33 6.08 -51.93 -0.32 1.01 16 29 H 0.06 0.70 7.20 -51.93 -0.37 0.33 16 30 H 0.08 0.97 7.42 -51.93 -0.39 0.58 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.57 5.55 -51.93 -0.29 0.28 16 36 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.40 4.75 6.27 -40.82 -0.26 4.49 16 38 H 0.14 2.45 5.84 -52.49 -0.31 2.14 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 41 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 2.88 5.77 -52.48 -0.30 2.58 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -32.74 340.23 -7.71 -40.46 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.04 Total: 6.85 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.27 Total: -6.83 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.19 Total: -41.31 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.15 Total: -20.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.74 -7.71 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929742322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.208 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds