Wall clock time and date at job start Tue Mar 31 2020 12:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.82416 * 2 1 4 4 C 1.51505 * 109.82353 * 120.94370 * 2 1 3 5 5 O 1.20755 * 121.02157 * 345.70419 * 4 2 1 6 6 C 1.51324 * 117.95183 * 165.68731 * 4 2 1 7 7 C 1.53234 * 108.65450 * 307.39984 * 6 4 2 8 8 C 1.52612 * 109.50040 * 56.05091 * 7 6 4 9 9 N 1.46877 * 109.54057 * 301.85978 * 8 7 6 10 10 C 1.34776 * 120.71794 * 237.05765 * 9 8 7 11 11 O 1.21583 * 120.00133 * 186.42341 * 10 9 8 12 12 N 1.34777 * 119.99399 * 6.42282 * 10 9 8 13 13 C 1.39943 * 119.99467 * 174.72333 * 12 10 9 14 14 C 1.38959 * 120.03770 * 30.46602 * 13 12 10 15 15 C 1.38160 * 120.06730 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.14039 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.06697 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.02983 * 180.02562 * 17 16 15 19 19 C 1.34834 * 116.99705 * 187.63132 * 18 17 16 20 20 H 1.08003 * 120.00241 * 5.92020 * 19 18 17 21 21 C 1.38649 * 120.00135 * 185.91254 * 19 18 17 22 22 N 1.31555 * 120.00383 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99804 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47068 * 89.99703 * 23 21 19 25 25 H 1.48500 * 109.47329 * 209.99769 * 23 21 19 26 26 H 1.48503 * 109.47338 * 329.99837 * 23 21 19 27 27 C 1.38706 * 120.03408 * 210.19689 * 13 12 10 28 28 H 1.09002 * 109.47284 * 158.07634 * 1 2 3 29 29 H 1.09005 * 109.47190 * 278.07752 * 1 2 3 30 30 H 1.09001 * 109.46750 * 38.07775 * 1 2 3 31 31 H 1.09002 * 109.61154 * 67.15105 * 6 4 2 32 32 H 1.09002 * 109.60504 * 187.65311 * 6 4 2 33 33 H 1.08990 * 109.47907 * 176.16989 * 7 6 4 34 34 H 1.09006 * 109.47543 * 296.18828 * 7 6 4 35 35 H 1.09001 * 109.40406 * 181.81950 * 8 7 6 36 36 H 1.09008 * 109.34201 * 61.85743 * 8 7 6 37 37 H 0.96996 * 120.00856 * 354.44125 * 12 10 9 38 38 H 1.07996 * 119.96714 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.93039 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.96904 * 179.97438 * 16 15 14 41 41 H 0.97000 * 120.00414 * 179.97438 * 22 21 19 42 42 H 1.08004 * 120.06884 * 359.96900 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 6 2.0438 -0.7329 1.2224 5 8 1.3115 -0.9896 2.1476 6 6 3.5028 -1.1335 1.2481 7 6 3.8197 -1.9125 -0.0328 8 6 3.4533 -1.0654 -1.2482 9 7 2.0292 -0.7107 -1.1885 10 6 1.1963 -1.0341 -2.1976 11 8 0.0482 -0.6340 -2.1901 12 7 1.6363 -1.8009 -3.2149 13 6 0.7446 -2.2285 -4.2051 14 6 -0.3496 -1.4412 -4.5427 15 6 -1.2306 -1.8630 -5.5198 16 6 -1.0266 -3.0678 -6.1647 17 6 0.0659 -3.8587 -5.8325 18 8 0.2659 -5.0421 -6.4669 19 6 1.2489 -5.8330 -5.9915 20 1 1.7715 -5.5602 -5.0865 21 6 1.5890 -6.9967 -6.6642 22 7 2.5484 -7.7682 -6.2006 23 14 0.6855 -7.4684 -8.2297 24 1 1.3852 -6.8817 -9.4009 25 1 0.6585 -8.9475 -8.3592 26 1 -0.7053 -6.9509 -8.1738 27 6 0.9552 -3.4358 -4.8546 28 1 -0.3634 -0.9534 -0.3837 29 1 -0.3634 0.1444 1.0175 30 1 -0.3633 0.8090 -0.6338 31 1 4.1265 -0.2409 1.2971 32 1 3.6936 -1.7642 2.1164 33 1 4.8833 -2.1492 -0.0605 34 1 3.2412 -2.8363 -0.0490 35 1 3.6491 -1.6332 -2.1578 36 1 4.0549 -0.1563 -1.2493 37 1 2.5716 -2.0531 -3.2629 38 1 -0.5115 -0.4988 -4.0407 39 1 -2.0805 -1.2496 -5.7801 40 1 -1.7173 -3.3949 -6.9278 41 1 2.7861 -8.5825 -6.6711 42 1 1.8076 -4.0472 -4.5974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929742322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:48 Heat of formation + Delta-G solvation = -53.232714 kcal Electronic energy + Delta-G solvation = -26635.894531 eV Core-core repulsion = 22775.407462 eV Total energy + Delta-G solvation = -3860.487069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31964 -41.02758 -40.32070 -38.50422 -37.47327 -35.96754 -34.39579 -34.07157 -32.38670 -30.88728 -30.00225 -28.23833 -27.19193 -25.83872 -23.71437 -23.42442 -23.04255 -21.52730 -20.45534 -19.77197 -19.40254 -18.84400 -17.71054 -17.36002 -16.88479 -16.77650 -16.33297 -16.25087 -16.10788 -15.78456 -15.66022 -15.49626 -15.26334 -14.66519 -14.57261 -14.17600 -14.12557 -13.90597 -13.76551 -13.39307 -13.31755 -12.98066 -12.72661 -12.69509 -12.62015 -12.38304 -12.25630 -12.08167 -12.00961 -11.53221 -11.31478 -11.00787 -10.83846 -10.37305 -9.70860 -9.34277 -8.84929 -8.48522 -6.20840 0.44513 0.64318 0.69524 1.33999 1.37330 1.44034 1.54480 1.96352 2.30158 2.66092 2.79728 2.86974 3.10377 3.16098 3.59577 3.73662 3.89189 4.00904 4.12789 4.22460 4.30429 4.35802 4.46071 4.46869 4.61936 4.62751 4.65990 4.73849 4.89034 4.92814 4.95060 5.02213 5.16348 5.18547 5.32498 5.40870 5.45294 5.53071 5.66830 5.75529 5.79268 5.93655 6.26079 6.32650 6.72912 6.86443 7.34442 7.60481 8.62799 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.003285 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.506001 B = 8522.709303 C = 9642.261883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.116 3.884 3 H 0.138 0.862 4 C 0.352 3.648 5 O -0.481 6.481 6 C -0.160 4.160 7 C -0.128 4.128 8 C 0.095 3.905 9 N -0.617 5.617 10 C 0.704 3.296 11 O -0.585 6.585 12 N -0.674 5.674 13 C 0.200 3.800 14 C -0.197 4.197 15 C -0.054 4.054 16 C -0.206 4.206 17 C 0.141 3.859 18 O -0.241 6.241 19 C -0.397 4.397 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.263 1.263 27 C -0.257 4.257 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.415 0.585 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.284 0.716 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 17.834 10.889 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.155 0.845 4 C 0.228 3.772 5 O -0.355 6.355 6 C -0.197 4.197 7 C -0.166 4.166 8 C -0.027 4.027 9 N -0.356 5.356 10 C 0.406 3.594 11 O -0.464 6.464 12 N -0.323 5.323 13 C 0.104 3.896 14 C -0.218 4.218 15 C -0.072 4.072 16 C -0.225 4.225 17 C 0.091 3.909 18 O -0.149 6.149 19 C -0.474 4.474 20 H 0.099 0.901 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.789 3.211 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.188 1.188 27 C -0.279 4.279 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.255 0.745 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.094 0.906 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.346 17.711 11.270 21.438 hybrid contribution 0.397 -1.007 -0.412 1.158 sum 4.744 16.704 10.858 20.480 Atomic orbital electron populations 1.21944 0.92725 1.03681 1.00756 1.21925 0.96443 0.97810 0.82586 0.84473 1.25808 0.92125 0.73675 0.85637 1.90420 1.61482 1.45119 1.38437 1.22358 0.92652 1.04236 1.00497 1.21861 1.04807 0.97735 0.92191 1.22041 0.79140 1.01904 0.99580 1.47338 1.09743 1.61168 1.17362 1.15914 0.84405 0.79083 0.79953 1.90917 1.18553 1.58418 1.78474 1.42745 1.12477 1.53321 1.23803 1.17278 0.91854 0.91625 0.88838 1.21270 0.97054 1.02063 1.01368 1.21011 0.98596 0.94169 0.93432 1.20539 0.98592 0.97065 1.06345 1.19311 0.94149 0.85601 0.91815 1.83566 1.51835 1.26039 1.53426 1.20668 1.13346 1.03301 1.10038 0.90068 1.25213 0.96559 0.94826 1.01915 1.69714 1.29774 1.14752 1.41951 0.85272 0.79695 0.77667 0.78467 1.19006 1.19428 1.18754 1.20815 1.04426 0.97759 1.04900 0.93246 0.92517 0.90981 0.84142 0.88873 0.85634 0.93317 0.89240 0.86310 0.74505 0.83818 0.82551 0.85062 0.90624 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 7.62 71.98 0.55 -2.80 16 2 C 0.12 2.09 3.75 44.37 0.17 2.26 16 3 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.35 6.43 6.69 29.56 0.20 6.63 16 5 O -0.48 -12.83 16.48 -1.44 -0.02 -12.85 16 6 C -0.16 -1.52 6.14 30.12 0.19 -1.34 16 7 C -0.13 -1.20 6.07 30.54 0.19 -1.01 16 8 C 0.09 0.97 6.30 86.18 0.54 1.52 16 9 N -0.62 -11.69 2.98 -816.57 -2.44 -14.13 16 10 C 0.70 19.53 7.82 179.05 1.40 20.93 16 11 O -0.59 -19.64 9.44 -3.98 -0.04 -19.68 16 12 N -0.67 -19.27 5.27 -317.23 -1.67 -20.94 16 13 C 0.20 7.29 6.38 38.13 0.24 7.53 16 14 C -0.20 -6.90 8.74 22.42 0.20 -6.70 16 15 C -0.05 -1.78 10.03 22.23 0.22 -1.56 16 16 C -0.21 -8.00 9.99 22.41 0.22 -7.78 16 17 C 0.14 6.56 6.64 22.56 0.15 6.71 16 18 O -0.24 -12.91 8.58 -22.82 -0.20 -13.10 16 19 C -0.40 -22.85 9.87 67.92 0.67 -22.18 16 20 H 0.08 4.85 5.59 -2.91 -0.02 4.84 16 21 C 0.01 0.77 5.49 84.83 0.47 1.23 16 22 N -0.92 -53.67 13.96 21.61 0.30 -53.37 16 23 Si 0.97 44.69 28.62 68.60 1.96 46.65 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 27 C -0.26 -11.07 9.02 22.51 0.20 -10.87 16 28 H 0.05 1.59 6.08 -2.39 -0.01 1.58 16 29 H 0.06 1.39 7.20 -2.38 -0.02 1.38 16 30 H 0.07 1.81 7.42 -2.39 -0.02 1.80 16 31 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.09 0.92 5.55 -2.39 -0.01 0.91 16 36 H 0.12 0.43 8.14 -2.38 -0.02 0.42 16 37 H 0.41 9.45 6.27 -92.71 -0.58 8.87 16 38 H 0.14 4.92 5.84 -2.91 -0.02 4.91 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.12 5.42 5.77 -2.91 -0.02 5.41 16 Total: -1.00 -75.32 340.23 3.99 -71.33 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.49 Total: 23.53 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.60 Total: -7.43 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -3.81 Total: -88.45 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.26 Total: -45.63 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.96 Total: 46.65 kcal Total: -75.32 3.99 -71.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929742322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.095 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds