Wall clock time and date at job start Tue Mar 31 2020 12:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.50500 * 2 1 4 4 C 1.53105 * 109.54034 * 239.89313 * 2 1 3 5 5 C 1.53234 * 109.42874 * 181.67331 * 4 2 1 6 6 C 1.51321 * 108.65113 * 56.18109 * 5 4 2 7 7 O 1.20758 * 121.02446 * 127.39838 * 6 5 4 8 8 C 1.51906 * 117.88583 * 307.24938 * 6 5 4 9 9 N 1.46880 * 109.50336 * 120.07761 * 2 1 3 10 10 C 1.34777 * 120.71098 * 357.04964 * 9 2 1 11 11 O 1.21580 * 120.00188 * 9.97964 * 10 9 2 12 12 N 1.34780 * 119.99707 * 189.97013 * 10 9 2 13 13 C 1.39940 * 120.00020 * 173.12980 * 12 10 9 14 14 C 1.38956 * 120.03529 * 26.07465 * 13 12 10 15 15 C 1.38151 * 120.06913 * 179.97438 * 14 13 12 16 16 C 1.38173 * 120.14063 * 359.79260 * 15 14 13 17 17 C 1.38915 * 120.06409 * 0.45811 * 16 15 14 18 18 O 1.35747 * 120.03294 * 179.78748 * 17 16 15 19 19 C 1.34828 * 117.00293 * 172.49446 * 18 17 16 20 20 H 1.08002 * 119.99461 * 3.80620 * 19 18 17 21 21 C 1.38650 * 120.00478 * 183.81155 * 19 18 17 22 22 N 1.31551 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99690 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47280 * 90.00043 * 23 21 19 25 25 H 1.48500 * 109.46564 * 210.00229 * 23 21 19 26 26 H 1.48501 * 109.46958 * 329.99961 * 23 21 19 27 27 C 1.38708 * 120.03443 * 206.05372 * 13 12 10 28 28 H 1.09003 * 109.47313 * 299.92394 * 1 2 3 29 29 H 1.09003 * 109.46916 * 59.91694 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47407 * 301.65837 * 4 2 1 32 32 H 1.08995 * 109.47781 * 61.67613 * 4 2 1 33 33 H 1.09007 * 109.60173 * 175.92625 * 5 4 2 34 34 H 1.08997 * 109.60470 * 296.42709 * 5 4 2 35 35 H 1.08997 * 109.98685 * 286.93337 * 8 6 5 36 36 H 1.09002 * 109.87945 * 165.85917 * 8 6 5 37 37 H 0.97004 * 119.99877 * 353.13896 * 12 10 9 38 38 H 1.08004 * 119.96521 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.93347 * 180.02562 * 15 14 13 40 40 H 1.07992 * 119.97051 * 180.23351 * 16 15 14 41 41 H 0.97004 * 120.00585 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.07033 * 0.04117 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7238 -1.2482 5 6 3.5738 -0.7589 -1.2246 6 6 4.0231 -1.4123 0.0642 7 8 4.7969 -2.3394 0.0552 8 6 3.4726 -0.8626 1.3689 9 7 2.0204 -0.6939 1.1981 10 6 1.1593 -1.1611 2.1238 11 8 -0.0341 -1.1748 1.8919 12 7 1.6214 -1.6132 3.3064 13 6 0.7232 -1.9633 4.3209 14 6 -0.5657 -2.3703 3.9987 15 6 -1.4528 -2.7166 4.9996 16 6 -1.0604 -2.6635 6.3234 17 6 0.2252 -2.2525 6.6522 18 8 0.6086 -2.1964 7.9532 19 6 1.9098 -1.9411 8.1974 20 1 2.5818 -1.7312 7.3784 21 6 2.3852 -1.9482 9.4998 22 7 3.6546 -1.6986 9.7381 23 14 1.2230 -2.3123 10.9163 24 1 1.2046 -3.7737 11.1785 25 1 1.6857 -1.5968 12.1325 26 1 -0.1453 -1.8554 10.5637 27 6 1.1189 -1.9048 5.6490 28 1 -0.3634 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6553 -1.7428 -1.2618 32 1 1.7042 -0.1948 -2.1393 33 1 3.9395 -1.3359 -2.0741 34 1 3.9638 0.2577 -1.2747 35 1 3.9330 0.1000 1.5914 36 1 3.6705 -1.5641 2.1794 37 1 2.5765 -1.6959 3.4544 38 1 -0.8744 -2.4160 2.9647 39 1 -2.4540 -3.0330 4.7467 40 1 -1.7549 -2.9384 7.1033 41 1 3.9874 -1.7040 10.6493 42 1 2.1200 -1.5884 5.9020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929744435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:54 Heat of formation + Delta-G solvation = -30.210477 kcal Electronic energy + Delta-G solvation = -26530.394983 eV Core-core repulsion = 22670.906233 eV Total energy + Delta-G solvation = -3859.488750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27791 -39.78936 -38.96185 -37.38806 -36.18792 -34.83109 -33.11309 -32.32369 -31.34427 -29.40134 -28.73015 -27.28198 -25.25330 -24.89764 -23.18428 -21.82506 -21.51064 -20.52206 -19.49211 -18.34266 -17.78286 -17.46331 -16.59942 -16.14548 -15.83255 -15.46633 -15.33811 -15.27541 -14.86029 -14.64092 -14.19946 -13.91272 -13.76380 -13.55913 -13.47672 -13.10337 -12.89017 -12.68752 -12.42972 -12.29698 -12.13103 -11.94075 -11.63750 -11.51330 -11.39776 -11.07894 -10.89640 -10.78679 -10.28050 -10.25273 -9.91642 -9.49606 -9.07580 -8.86328 -8.83170 -7.75422 -7.24837 -6.42057 -4.09201 1.37979 1.98161 2.30895 2.38011 3.08939 3.22687 3.26443 3.41238 3.51867 3.67057 4.20711 4.24114 4.36886 4.37655 4.54185 4.71904 4.79852 4.88451 5.00967 5.01855 5.09259 5.12659 5.29381 5.47695 5.55359 5.60025 5.64451 5.94107 5.94626 6.01346 6.02444 6.15761 6.27334 6.39336 6.51013 6.66282 6.91802 6.94220 7.08314 7.22368 7.28792 7.63262 7.77222 7.86119 8.03708 8.46757 8.93676 9.56525 10.65728 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003182 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.154759 B = 8797.166048 C = 9931.844164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.078 0.922 4 C -0.126 4.126 5 C -0.169 4.169 6 C 0.354 3.646 7 O -0.442 6.442 8 C 0.062 3.938 9 N -0.625 5.625 10 C 0.711 3.289 11 O -0.552 6.552 12 N -0.678 5.678 13 C 0.195 3.805 14 C -0.211 4.211 15 C -0.065 4.065 16 C -0.204 4.204 17 C 0.177 3.823 18 O -0.217 6.217 19 C -0.389 4.389 20 H 0.104 0.896 21 C 0.063 3.937 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.251 4.251 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.402 0.598 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.279 0.721 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 4.369 -21.176 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.096 0.904 4 C -0.165 4.165 5 C -0.207 4.207 6 C 0.227 3.773 7 O -0.313 6.313 8 C -0.062 4.062 9 N -0.366 5.366 10 C 0.414 3.586 11 O -0.429 6.429 12 N -0.326 5.326 13 C 0.101 3.899 14 C -0.232 4.232 15 C -0.083 4.083 16 C -0.224 4.224 17 C 0.124 3.876 18 O -0.122 6.122 19 C -0.465 4.465 20 H 0.122 0.878 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.183 1.183 27 C -0.273 4.273 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.228 3.888 -21.003 21.476 hybrid contribution 0.580 0.005 0.817 1.002 sum -1.648 3.893 -20.186 20.624 Atomic orbital electron populations 1.22234 0.91558 1.04531 1.01259 1.21222 0.96766 0.94609 0.82089 0.90397 1.22036 0.92983 1.02697 0.98785 1.22325 0.97928 1.03348 0.97068 1.25244 0.77654 0.81532 0.92886 1.90470 1.27750 1.23575 1.89487 1.22509 0.82142 1.03758 0.97834 1.47328 1.04198 1.62019 1.23032 1.15814 0.84917 0.77989 0.79882 1.90905 1.13648 1.60434 1.77908 1.42896 1.09943 1.67106 1.12623 1.17297 0.89906 0.96831 0.85883 1.21212 0.93191 1.07821 1.00974 1.20599 0.98424 0.97701 0.91619 1.20269 0.95322 1.10318 0.96528 1.18740 0.92491 0.92568 0.83801 1.83594 1.28843 1.79516 1.20279 1.20716 0.81219 1.48991 0.95572 0.87845 1.24443 0.95976 0.95847 0.97692 1.69638 1.12963 1.47275 1.22116 0.86183 0.81596 0.78903 0.80251 1.19883 1.20857 1.18304 1.20819 1.02697 1.13397 0.90338 0.90758 0.93682 0.90078 0.90712 0.89148 0.88920 0.87921 0.87557 0.87777 0.76122 0.83792 0.86528 0.86526 0.91096 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.59 37.16 0.28 -1.08 16 2 C 0.16 1.25 3.39 -67.67 -0.23 1.03 16 3 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -0.78 5.38 -26.56 -0.14 -0.92 16 5 C -0.17 -0.99 6.14 -27.46 -0.17 -1.16 16 6 C 0.35 3.17 6.88 -28.13 -0.19 2.98 16 7 O -0.44 -5.62 17.90 6.00 0.11 -5.51 16 8 C 0.06 0.52 6.53 -4.22 -0.03 0.49 16 9 N -0.62 -6.42 2.97 -171.55 -0.51 -6.93 16 10 C 0.71 10.05 8.05 -86.91 -0.70 9.35 16 11 O -0.55 -8.91 8.69 5.30 0.05 -8.86 16 12 N -0.68 -10.24 5.26 -14.24 -0.07 -10.31 16 13 C 0.20 3.64 6.45 -83.72 -0.54 3.10 16 14 C -0.21 -3.89 8.82 -39.35 -0.35 -4.24 16 15 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 16 C -0.20 -4.11 9.99 -39.35 -0.39 -4.50 16 17 C 0.18 4.07 6.64 -39.13 -0.26 3.81 16 18 O -0.22 -5.69 8.58 0.06 0.00 -5.69 16 19 C -0.39 -10.83 9.95 30.88 0.31 -10.52 16 20 H 0.10 2.91 5.45 -52.49 -0.29 2.63 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -25.19 13.96 55.48 0.77 -24.42 16 23 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.25 -5.33 9.05 -39.21 -0.35 -5.68 16 28 H 0.07 0.91 6.85 -51.93 -0.36 0.56 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.97 6.63 -51.93 -0.34 0.62 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.92 5.96 -51.93 -0.31 0.61 16 37 H 0.40 5.17 6.43 -40.82 -0.26 4.91 16 38 H 0.14 2.62 5.46 -52.48 -0.29 2.33 16 39 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.13 2.92 5.67 -52.49 -0.30 2.62 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -32.57 341.54 -7.72 -40.28 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.08 Total: 6.81 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.26 Total: -7.24 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.19 Total: -41.66 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.15 Total: -20.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.57 -7.72 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929744435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.073 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds