Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.50500 * 2 1 4 4 C 1.53105 * 109.54034 * 239.89313 * 2 1 3 5 5 C 1.53234 * 109.42874 * 181.67331 * 4 2 1 6 6 C 1.51321 * 108.65113 * 56.18109 * 5 4 2 7 7 O 1.20758 * 121.02446 * 127.39838 * 6 5 4 8 8 C 1.51906 * 117.88583 * 307.24938 * 6 5 4 9 9 N 1.46880 * 109.50336 * 120.07761 * 2 1 3 10 10 C 1.34777 * 120.71098 * 357.04964 * 9 2 1 11 11 O 1.21580 * 120.00188 * 9.97964 * 10 9 2 12 12 N 1.34780 * 119.99707 * 189.97013 * 10 9 2 13 13 C 1.39940 * 120.00020 * 173.12980 * 12 10 9 14 14 C 1.38956 * 120.03529 * 26.07465 * 13 12 10 15 15 C 1.38151 * 120.06913 * 179.97438 * 14 13 12 16 16 C 1.38173 * 120.14063 * 359.79260 * 15 14 13 17 17 C 1.38915 * 120.06409 * 0.45811 * 16 15 14 18 18 O 1.35747 * 120.03294 * 179.78748 * 17 16 15 19 19 C 1.34828 * 117.00293 * 172.49446 * 18 17 16 20 20 H 1.08002 * 119.99461 * 3.80620 * 19 18 17 21 21 C 1.38650 * 120.00478 * 183.81155 * 19 18 17 22 22 N 1.31551 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99690 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47280 * 90.00043 * 23 21 19 25 25 H 1.48500 * 109.46564 * 210.00229 * 23 21 19 26 26 H 1.48501 * 109.46958 * 329.99961 * 23 21 19 27 27 C 1.38708 * 120.03443 * 206.05372 * 13 12 10 28 28 H 1.09003 * 109.47313 * 299.92394 * 1 2 3 29 29 H 1.09003 * 109.46916 * 59.91694 * 1 2 3 30 30 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47407 * 301.65837 * 4 2 1 32 32 H 1.08995 * 109.47781 * 61.67613 * 4 2 1 33 33 H 1.09007 * 109.60173 * 175.92625 * 5 4 2 34 34 H 1.08997 * 109.60470 * 296.42709 * 5 4 2 35 35 H 1.08997 * 109.98685 * 286.93337 * 8 6 5 36 36 H 1.09002 * 109.87945 * 165.85917 * 8 6 5 37 37 H 0.97004 * 119.99877 * 353.13896 * 12 10 9 38 38 H 1.08004 * 119.96521 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.93347 * 180.02562 * 15 14 13 40 40 H 1.07992 * 119.97051 * 180.23351 * 16 15 14 41 41 H 0.97004 * 120.00585 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.07033 * 0.04117 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7238 -1.2482 5 6 3.5738 -0.7589 -1.2246 6 6 4.0231 -1.4123 0.0642 7 8 4.7969 -2.3394 0.0552 8 6 3.4726 -0.8626 1.3689 9 7 2.0204 -0.6939 1.1981 10 6 1.1593 -1.1611 2.1238 11 8 -0.0341 -1.1748 1.8919 12 7 1.6214 -1.6132 3.3064 13 6 0.7232 -1.9633 4.3209 14 6 -0.5657 -2.3703 3.9987 15 6 -1.4528 -2.7166 4.9996 16 6 -1.0604 -2.6635 6.3234 17 6 0.2252 -2.2525 6.6522 18 8 0.6086 -2.1964 7.9532 19 6 1.9098 -1.9411 8.1974 20 1 2.5818 -1.7312 7.3784 21 6 2.3852 -1.9482 9.4998 22 7 3.6546 -1.6986 9.7381 23 14 1.2230 -2.3123 10.9163 24 1 1.2046 -3.7737 11.1785 25 1 1.6857 -1.5968 12.1325 26 1 -0.1453 -1.8554 10.5637 27 6 1.1189 -1.9048 5.6490 28 1 -0.3634 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6553 -1.7428 -1.2618 32 1 1.7042 -0.1948 -2.1393 33 1 3.9395 -1.3359 -2.0741 34 1 3.9638 0.2577 -1.2747 35 1 3.9330 0.1000 1.5914 36 1 3.6705 -1.5641 2.1794 37 1 2.5765 -1.6959 3.4544 38 1 -0.8744 -2.4160 2.9647 39 1 -2.4540 -3.0330 4.7467 40 1 -1.7549 -2.9384 7.1033 41 1 3.9874 -1.7040 10.6493 42 1 2.1200 -1.5884 5.9020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929744435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = -50.890695 kcal Electronic energy + Delta-G solvation = -26531.291744 eV Core-core repulsion = 22670.906233 eV Total energy + Delta-G solvation = -3860.385512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.29822 -40.96870 -40.34672 -38.69649 -37.40581 -36.07128 -34.44964 -33.90692 -32.10041 -30.95718 -30.24478 -28.14994 -27.18028 -25.61350 -24.24911 -23.41874 -22.62829 -21.60974 -20.50321 -19.83022 -19.36816 -18.79231 -17.67700 -17.19922 -16.89991 -16.59116 -16.53251 -16.17142 -16.04572 -15.99248 -15.68588 -15.45529 -15.31393 -14.68375 -14.60710 -14.26467 -14.17523 -13.97372 -13.65574 -13.51425 -13.26026 -13.08240 -12.71904 -12.61531 -12.52644 -12.39660 -12.13962 -12.06258 -12.00140 -11.49231 -11.35510 -10.97084 -10.84459 -10.19567 -9.71853 -9.34474 -8.84274 -8.48935 -6.21421 0.43452 0.65309 0.70677 1.32886 1.37012 1.39290 1.53770 1.93869 2.29517 2.61237 2.80132 2.86442 3.07644 3.16884 3.54017 3.78128 3.82018 4.07809 4.10863 4.25512 4.34610 4.37781 4.45086 4.48844 4.51701 4.63384 4.65798 4.80268 4.92461 4.94808 4.98938 5.06710 5.15242 5.29361 5.34704 5.46275 5.51778 5.62785 5.71397 5.76754 5.79105 5.93430 6.26427 6.27369 6.68206 6.85738 7.32680 7.59601 8.62340 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003182 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.154759 B = 8797.166048 C = 9931.844164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.149 3.851 3 H 0.109 0.891 4 C -0.117 4.117 5 C -0.161 4.161 6 C 0.357 3.643 7 O -0.487 6.487 8 C 0.056 3.944 9 N -0.617 5.617 10 C 0.705 3.295 11 O -0.574 6.574 12 N -0.679 5.679 13 C 0.201 3.799 14 C -0.206 4.206 15 C -0.052 4.052 16 C -0.207 4.207 17 C 0.143 3.857 18 O -0.241 6.241 19 C -0.399 4.399 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.262 4.262 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.410 0.590 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.284 0.716 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 5.212 -23.499 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 H 0.126 0.874 4 C -0.156 4.156 5 C -0.198 4.198 6 C 0.233 3.767 7 O -0.361 6.361 8 C -0.068 4.068 9 N -0.356 5.356 10 C 0.408 3.592 11 O -0.452 6.452 12 N -0.327 5.327 13 C 0.105 3.895 14 C -0.226 4.226 15 C -0.070 4.070 16 C -0.227 4.227 17 C 0.093 3.907 18 O -0.148 6.148 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.284 4.284 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.451 4.756 -23.405 24.131 hybrid contribution 0.883 -0.223 1.194 1.502 sum -2.568 4.532 -22.211 22.813 Atomic orbital electron populations 1.22073 0.92883 1.02819 1.01176 1.21559 0.95755 0.96177 0.81719 0.87368 1.21991 0.92907 1.01767 0.98895 1.22358 0.97539 1.04870 0.95021 1.25712 0.76309 0.80450 0.94196 1.90470 1.30043 1.25543 1.90052 1.22717 0.81064 1.05241 0.97769 1.47391 1.04544 1.60975 1.22710 1.15995 0.85193 0.78011 0.79989 1.90893 1.14736 1.61260 1.78340 1.42893 1.10033 1.67257 1.12531 1.17330 0.90725 0.95761 0.85718 1.21523 0.92970 1.06463 1.01677 1.21041 0.99986 0.95727 0.90268 1.20554 0.94282 1.09847 0.98040 1.19283 0.94137 0.94069 0.83195 1.83541 1.27623 1.81620 1.22061 1.20696 0.82078 1.49232 0.95471 0.89972 1.25228 0.97505 0.95880 1.00035 1.69716 1.14462 1.49140 1.22965 0.85252 0.79183 0.79064 0.77466 1.19132 1.19344 1.18666 1.20779 1.01960 1.14183 0.91486 0.93591 0.90874 0.92605 0.92663 0.85899 0.88456 0.84533 0.84370 0.88864 0.75134 0.82937 0.82451 0.85006 0.90623 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 7.59 71.98 0.55 -1.78 16 2 C 0.15 1.94 3.39 44.95 0.15 2.10 16 3 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.03 5.38 30.71 0.17 -0.86 16 5 C -0.16 -1.32 6.14 30.12 0.18 -1.13 16 6 C 0.36 5.78 6.88 29.69 0.20 5.99 16 7 O -0.49 -12.19 17.90 -1.44 -0.03 -12.22 16 8 C 0.06 0.84 6.53 85.89 0.56 1.41 16 9 N -0.62 -11.61 2.97 -814.92 -2.42 -14.04 16 10 C 0.71 19.43 8.05 179.05 1.44 20.87 16 11 O -0.57 -18.11 8.69 -3.97 -0.03 -18.14 16 12 N -0.68 -20.55 5.26 -317.24 -1.67 -22.22 16 13 C 0.20 7.52 6.45 38.13 0.25 7.76 16 14 C -0.21 -7.31 8.82 22.42 0.20 -7.11 16 15 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 16 C -0.21 -8.14 9.99 22.42 0.22 -7.92 16 17 C 0.14 6.74 6.64 22.56 0.15 6.89 16 18 O -0.24 -13.04 8.58 -22.69 -0.19 -13.24 16 19 C -0.40 -23.20 9.95 67.92 0.68 -22.53 16 20 H 0.08 4.96 5.45 -2.91 -0.02 4.95 16 21 C 0.01 0.69 5.49 84.83 0.47 1.15 16 22 N -0.92 -54.43 13.96 21.61 0.30 -54.13 16 23 Si 0.97 45.21 28.62 68.60 1.96 47.17 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 27 C -0.26 -11.55 9.05 22.51 0.20 -11.35 16 28 H 0.05 1.08 6.85 -2.39 -0.02 1.06 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.27 6.63 -2.39 -0.02 1.26 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.64 5.96 -2.39 -0.01 1.62 16 37 H 0.41 10.81 6.43 -92.71 -0.60 10.21 16 38 H 0.15 5.29 5.46 -2.91 -0.02 5.28 16 39 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.12 5.50 5.67 -2.91 -0.02 5.48 16 Total: -1.00 -74.52 341.54 4.04 -70.48 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.48 Total: 24.34 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.64 Total: -8.02 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -3.79 Total: -90.38 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.26 Total: -43.59 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.96 Total: 47.17 kcal Total: -74.52 4.04 -70.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929744435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.594 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds