Wall clock time and date at job start Tue Mar 31 2020 13:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47555 * 2 1 4 4 C 1.46502 * 120.00341 * 89.99629 * 3 2 1 5 5 C 1.50706 * 109.46622 * 90.00315 * 4 3 2 6 6 H 1.08005 * 120.00138 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99722 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 119.99815 * 9 7 5 12 12 H 1.48498 * 109.47295 * 240.00422 * 9 7 5 13 13 C 1.34776 * 120.00157 * 270.00453 * 3 2 1 14 14 O 1.21285 * 120.00530 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99688 * 359.97438 * 13 3 2 16 16 H 1.08995 * 115.55205 * 325.58023 * 15 13 3 17 17 C 1.52994 * 117.49754 * 111.25566 * 15 13 3 18 18 C 1.53001 * 117.49586 * 179.91624 * 15 13 3 19 19 H 1.08996 * 117.49696 * 145.01944 * 18 15 13 20 20 C 1.50704 * 117.50197 * 359.97438 * 18 15 13 21 21 C 1.38251 * 120.00185 * 300.00502 * 20 18 15 22 22 C 1.38209 * 120.00075 * 179.97438 * 21 20 18 23 23 C 1.38259 * 119.99926 * 359.96204 * 22 21 20 24 24 C 1.38214 * 120.00080 * 0.02562 * 23 22 21 25 25 N 1.48024 * 119.99994 * 179.97438 * 24 23 22 26 26 O 1.21797 * 119.99626 * 0.02562 * 25 24 23 27 27 O 1.21797 * 119.99707 * 180.02562 * 25 24 23 28 28 C 1.38220 * 119.99592 * 119.72615 * 20 18 15 29 29 H 1.09003 * 109.46718 * 300.00238 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99669 * 1 2 3 31 31 H 1.08994 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46718 * 239.99762 * 2 1 3 33 33 H 1.08998 * 109.47090 * 120.00331 * 2 1 3 34 34 H 1.08996 * 109.47065 * 330.00997 * 4 3 2 35 35 H 1.08994 * 109.47523 * 210.00473 * 4 3 2 36 36 H 0.97000 * 119.99651 * 0.02562 * 8 7 5 37 37 H 1.09003 * 117.49644 * 214.97664 * 17 15 13 38 38 H 1.09004 * 117.50460 * 359.97438 * 17 15 13 39 39 H 1.08005 * 120.00095 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.00123 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99815 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.99901 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1493 2.3895 2.8778 8 7 3.3490 3.1249 3.6185 9 14 5.9133 2.0954 3.4174 10 1 6.6009 1.2403 2.4168 11 1 6.6212 3.3963 3.5261 12 1 5.9203 1.4161 4.7379 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9922 1.3059 -2.4723 16 1 2.2041 0.2367 -2.4738 17 6 0.8240 1.7958 -3.3303 18 6 2.2643 2.0817 -3.7627 19 1 2.6548 1.5228 -4.6131 20 6 2.7620 3.4981 -3.6313 21 6 1.9951 4.4422 -2.9743 22 6 2.4518 5.7410 -2.8533 23 6 3.6760 6.0960 -3.3888 24 6 4.4429 5.1521 -4.0455 25 7 5.7534 5.5323 -4.6192 26 8 6.1560 6.6768 -4.5122 27 8 6.4290 4.7005 -5.1983 28 6 3.9880 3.8518 -4.1628 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5819 1.6877 2.0284 35 1 2.0957 3.1410 1.1384 36 1 2.4327 3.2767 3.3388 37 1 0.2675 1.0488 -3.8964 38 1 0.2365 2.6317 -2.9506 39 1 1.0390 4.1648 -2.5554 40 1 1.8524 6.4786 -2.3404 41 1 4.0331 7.1108 -3.2939 42 1 4.5889 3.1133 -4.6724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:32 Heat of formation + Delta-G solvation = 18.357528 kcal Electronic energy + Delta-G solvation = -26943.093920 eV Core-core repulsion = 23085.711237 eV Total energy + Delta-G solvation = -3857.382683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99858 -40.52525 -38.81762 -36.61182 -36.37777 -35.42072 -33.14331 -31.72096 -31.13930 -30.21020 -27.29021 -26.39977 -24.45764 -23.86666 -23.18754 -22.67440 -22.11585 -20.92434 -19.00383 -18.52693 -18.01229 -17.39128 -17.34167 -16.83444 -16.46404 -15.62062 -15.44911 -14.82195 -14.64381 -14.06180 -13.82531 -13.62913 -13.51739 -13.32285 -12.91061 -12.53233 -12.48133 -12.42707 -11.91202 -11.69164 -11.47135 -11.44137 -11.35857 -11.20367 -11.00791 -10.99496 -10.90480 -10.83834 -10.62739 -10.54989 -10.18769 -9.57947 -9.27216 -9.12000 -8.46255 -8.44312 -7.77296 -6.47053 -4.19796 0.07476 1.06961 1.56605 1.63007 2.81938 3.38600 3.43594 3.45539 3.54493 3.60333 3.84835 4.25489 4.46159 4.55313 4.60306 4.66735 4.71053 4.82389 4.96846 5.03082 5.13815 5.21284 5.28734 5.39864 5.42418 5.44729 5.50740 5.63283 5.73660 5.76005 5.85711 5.88338 6.04234 6.10631 6.29391 6.29676 6.38489 6.68103 6.68709 6.98162 7.24767 7.82838 7.92939 8.13049 8.33902 8.68235 8.82945 9.49706 10.90349 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.004830 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.017121 B = 5795.351808 C = 7597.519150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.584 5.584 4 C 0.238 3.762 5 C -0.606 4.606 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 1.074 2.926 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.530 3.470 14 O -0.532 6.532 15 C -0.173 4.173 16 H 0.128 0.872 17 C -0.146 4.146 18 C -0.092 4.092 19 H 0.125 0.875 20 C -0.040 4.040 21 C 0.009 3.991 22 C -0.125 4.125 23 C -0.051 4.051 24 C -0.056 4.056 25 N 0.037 4.963 26 O -0.173 6.173 27 O -0.173 6.173 28 C -0.050 4.050 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -3.464 -15.376 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.314 5.314 4 C 0.118 3.882 5 C -0.645 4.645 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.545 5.545 9 Si 0.902 3.098 10 H -0.216 1.216 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.317 3.683 14 O -0.410 6.410 15 C -0.194 4.194 16 H 0.145 0.855 17 C -0.184 4.184 18 C -0.110 4.110 19 H 0.143 0.857 20 C -0.041 4.041 21 C -0.009 4.009 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.139 4.139 25 N 0.553 4.447 26 O -0.387 6.387 27 O -0.387 6.387 28 C -0.069 4.069 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.965 -2.710 -13.855 16.210 hybrid contribution -0.626 -0.538 -1.054 1.339 sum -8.590 -3.248 -14.910 17.512 Atomic orbital electron populations 1.22197 0.96533 1.01574 1.02247 1.21454 0.93626 0.83954 1.02771 1.48042 1.62836 1.13306 1.07175 1.19334 0.96997 0.92949 0.78899 1.22272 0.96838 1.35819 1.09566 0.93046 1.25784 1.05826 0.93384 0.93292 1.70763 1.07795 1.36324 1.39627 0.83469 0.74230 0.76482 0.75606 1.21573 1.21156 1.21170 1.19387 0.78389 0.86435 0.84131 1.90671 1.46231 1.17877 1.86243 1.22529 1.05241 1.00521 0.91077 0.85465 1.23135 0.90288 1.03493 1.01438 1.21006 0.99150 0.92951 0.97927 0.85681 1.18729 0.93328 0.93997 0.97999 1.21219 0.98966 0.91680 0.89032 1.21005 0.95622 0.97117 1.00658 1.20937 0.93355 0.99544 0.93198 1.20860 0.86456 0.96951 1.09645 1.43630 1.02475 1.00249 0.98305 1.94502 1.75288 1.05312 1.63573 1.94500 1.55677 1.46478 1.42051 1.20570 0.95333 0.93520 0.97458 0.92335 0.92802 0.92041 0.91452 0.90059 0.96089 0.94951 0.92246 0.87147 0.87953 0.85115 0.84105 0.83593 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.55 5.95 -4.05 -0.02 1.53 16 3 N -0.58 -11.28 2.46 -175.06 -0.43 -11.71 16 4 C 0.24 5.84 4.47 -5.19 -0.02 5.81 16 5 C -0.61 -16.91 9.39 -34.44 -0.32 -17.23 16 6 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 7 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 8 N -0.91 -27.23 13.65 55.43 0.76 -26.47 16 9 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.53 9.66 7.32 -10.98 -0.08 9.58 16 14 O -0.53 -11.41 11.29 5.55 0.06 -11.35 16 15 C -0.17 -2.15 5.28 -91.77 -0.48 -2.64 16 16 H 0.13 1.35 6.44 -51.93 -0.33 1.01 16 17 C -0.15 -1.34 9.58 -26.70 -0.26 -1.60 16 18 C -0.09 -1.01 6.05 -91.73 -0.55 -1.56 16 19 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.04 -0.54 4.36 -104.62 -0.46 -0.99 16 21 C 0.01 0.13 6.17 -39.59 -0.24 -0.12 16 22 C -0.13 -1.67 10.05 -39.58 -0.40 -2.06 16 23 C -0.05 -0.73 9.56 -39.58 -0.38 -1.10 16 24 C -0.06 -0.88 6.85 -79.95 -0.55 -1.42 16 25 N 0.04 0.63 4.45 33.96 0.15 0.78 16 26 O -0.17 -2.99 18.45 -29.46 -0.54 -3.54 16 27 O -0.17 -3.00 18.45 -29.46 -0.54 -3.54 16 28 C -0.05 -0.72 9.25 -39.58 -0.37 -1.08 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.81 6.00 -51.93 -0.31 0.50 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.03 0.88 7.29 -51.93 -0.38 0.51 16 36 H 0.27 7.90 7.22 -40.82 -0.29 7.60 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.97 6.18 -51.93 -0.32 0.65 16 39 H 0.13 1.65 5.79 -52.48 -0.30 1.34 16 40 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.15 1.83 7.61 -52.49 -0.40 1.43 16 42 H 0.15 1.88 7.61 -52.49 -0.40 1.48 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -33.95 356.67 -9.42 -43.38 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.32 Total: 0.37 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.85 Total: -13.97 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.48 Total: -37.41 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.02 Total: -18.42 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.95 -9.42 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.735 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds