Wall clock time and date at job start Tue Mar 31 2020 13:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47555 * 2 1 4 4 C 1.46502 * 120.00341 * 89.99629 * 3 2 1 5 5 C 1.50706 * 109.46622 * 90.00315 * 4 3 2 6 6 H 1.08005 * 120.00138 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99722 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 119.99815 * 9 7 5 12 12 H 1.48498 * 109.47295 * 240.00422 * 9 7 5 13 13 C 1.34776 * 120.00157 * 270.00453 * 3 2 1 14 14 O 1.21285 * 120.00530 * 179.97438 * 13 3 2 15 15 C 1.50709 * 119.99688 * 359.97438 * 13 3 2 16 16 H 1.08995 * 115.55205 * 325.58023 * 15 13 3 17 17 C 1.52994 * 117.49754 * 111.25566 * 15 13 3 18 18 C 1.53001 * 117.49586 * 179.91624 * 15 13 3 19 19 H 1.08996 * 117.49696 * 145.01944 * 18 15 13 20 20 C 1.50704 * 117.50197 * 359.97438 * 18 15 13 21 21 C 1.38251 * 120.00185 * 300.00502 * 20 18 15 22 22 C 1.38209 * 120.00075 * 179.97438 * 21 20 18 23 23 C 1.38259 * 119.99926 * 359.96204 * 22 21 20 24 24 C 1.38214 * 120.00080 * 0.02562 * 23 22 21 25 25 N 1.48024 * 119.99994 * 179.97438 * 24 23 22 26 26 O 1.21797 * 119.99626 * 0.02562 * 25 24 23 27 27 O 1.21797 * 119.99707 * 180.02562 * 25 24 23 28 28 C 1.38220 * 119.99592 * 119.72615 * 20 18 15 29 29 H 1.09003 * 109.46718 * 300.00238 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99669 * 1 2 3 31 31 H 1.08994 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46718 * 239.99762 * 2 1 3 33 33 H 1.08998 * 109.47090 * 120.00331 * 2 1 3 34 34 H 1.08996 * 109.47065 * 330.00997 * 4 3 2 35 35 H 1.08994 * 109.47523 * 210.00473 * 4 3 2 36 36 H 0.97000 * 119.99651 * 0.02562 * 8 7 5 37 37 H 1.09003 * 117.49644 * 214.97664 * 17 15 13 38 38 H 1.09004 * 117.50460 * 359.97438 * 17 15 13 39 39 H 1.08005 * 120.00095 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.00123 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99815 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.99901 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1493 2.3895 2.8778 8 7 3.3490 3.1249 3.6185 9 14 5.9133 2.0954 3.4174 10 1 6.6009 1.2403 2.4168 11 1 6.6212 3.3963 3.5261 12 1 5.9203 1.4161 4.7379 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9922 1.3059 -2.4723 16 1 2.2041 0.2367 -2.4738 17 6 0.8240 1.7958 -3.3303 18 6 2.2643 2.0817 -3.7627 19 1 2.6548 1.5228 -4.6131 20 6 2.7620 3.4981 -3.6313 21 6 1.9951 4.4422 -2.9743 22 6 2.4518 5.7410 -2.8533 23 6 3.6760 6.0960 -3.3888 24 6 4.4429 5.1521 -4.0455 25 7 5.7534 5.5323 -4.6192 26 8 6.1560 6.6768 -4.5122 27 8 6.4290 4.7005 -5.1983 28 6 3.9880 3.8518 -4.1628 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5819 1.6877 2.0284 35 1 2.0957 3.1410 1.1384 36 1 2.4327 3.2767 3.3388 37 1 0.2675 1.0488 -3.8964 38 1 0.2365 2.6317 -2.9506 39 1 1.0390 4.1648 -2.5554 40 1 1.8524 6.4786 -2.3404 41 1 4.0331 7.1108 -3.2939 42 1 4.5889 3.1133 -4.6724 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:31 Heat of formation + Delta-G solvation = -0.093099 kcal Electronic energy + Delta-G solvation = -26943.893999 eV Core-core repulsion = 23085.711237 eV Total energy + Delta-G solvation = -3858.182763 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.28633 -41.67646 -40.06718 -37.78133 -37.67293 -36.81540 -35.18675 -32.83942 -32.20000 -31.55487 -29.03028 -27.62906 -26.02863 -24.96830 -24.47013 -23.81576 -23.48328 -22.01978 -20.23204 -19.83517 -19.39721 -18.90332 -18.66358 -18.33785 -17.63803 -17.07291 -16.54239 -16.14272 -15.80136 -15.67819 -15.14994 -14.85823 -14.77108 -14.43812 -14.38433 -13.86002 -13.77482 -13.50550 -13.39438 -13.17806 -12.90613 -12.75157 -12.63449 -12.47277 -12.35703 -12.32200 -12.29215 -12.05615 -12.03143 -11.88209 -11.45249 -11.21931 -10.80546 -10.65975 -10.27547 -9.63096 -9.43419 -8.72065 -6.48621 -1.16998 0.01386 0.35053 0.41833 1.43161 1.52280 1.61119 1.68057 2.23107 2.34337 2.47130 2.92616 3.05439 3.25962 3.52834 3.62798 3.68061 3.77316 3.85540 3.96327 4.03996 4.09443 4.19054 4.36969 4.40577 4.53158 4.65708 4.73729 4.76288 4.79623 4.82904 4.89870 4.95778 4.96876 5.00999 5.08547 5.16721 5.32692 5.34105 5.57114 5.58387 5.79348 6.11896 6.42900 6.49609 6.71892 7.25485 7.42206 8.62212 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.004830 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.017121 B = 5795.351808 C = 7597.519150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.594 5.594 4 C 0.253 3.747 5 C -0.612 4.612 6 H 0.040 0.960 7 C -0.029 4.029 8 N -0.932 5.932 9 Si 1.115 2.885 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.518 3.482 14 O -0.575 6.575 15 C -0.184 4.184 16 H 0.155 0.845 17 C -0.114 4.114 18 C -0.095 4.095 19 H 0.158 0.842 20 C -0.044 4.044 21 C 0.003 3.997 22 C -0.132 4.132 23 C -0.061 4.061 24 C -0.076 4.076 25 N 0.037 4.963 26 O -0.191 6.191 27 O -0.183 6.183 28 C -0.059 4.059 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.013 0.987 35 H -0.004 1.004 36 H 0.257 0.743 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 -5.831 -17.028 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.131 3.869 5 C -0.651 4.651 6 H 0.058 0.942 7 C -0.227 4.227 8 N -0.569 5.569 9 Si 0.937 3.063 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.307 3.693 14 O -0.456 6.456 15 C -0.204 4.204 16 H 0.172 0.828 17 C -0.151 4.151 18 C -0.113 4.113 19 H 0.175 0.825 20 C -0.045 4.045 21 C -0.015 4.015 22 C -0.150 4.150 23 C -0.080 4.080 24 C -0.160 4.160 25 N 0.550 4.450 26 O -0.402 6.402 27 O -0.396 6.396 28 C -0.078 4.078 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.173 0.827 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.156 -5.100 -15.539 18.743 hybrid contribution -0.348 0.199 -0.537 0.671 sum -9.505 -4.901 -16.076 19.308 Atomic orbital electron populations 1.22117 0.94097 1.03485 1.01811 1.21746 0.95606 0.81367 1.03507 1.48077 1.63566 1.15006 1.05769 1.18748 0.95112 0.91461 0.81594 1.22560 0.98274 1.34995 1.09258 0.94202 1.27155 1.08988 0.92804 0.93774 1.70873 1.07685 1.37940 1.40393 0.82948 0.70164 0.76728 0.76436 1.20260 1.21138 1.19227 1.20455 0.76981 0.86245 0.85574 1.90649 1.47830 1.19998 1.87139 1.22448 1.08837 1.01192 0.87956 0.82791 1.23366 0.89218 1.03646 0.98843 1.21258 1.00979 0.91229 0.97864 0.82453 1.19098 0.92773 0.95639 0.97028 1.21496 0.99483 0.91899 0.88620 1.21336 0.95484 0.97872 1.00340 1.21158 0.93653 0.99963 0.93209 1.21132 0.85964 0.98076 1.10818 1.43872 1.02979 1.00047 0.98095 1.94483 1.75840 1.05647 1.64192 1.94470 1.56253 1.46434 1.42446 1.20829 0.95946 0.93250 0.97795 0.94809 0.91189 0.88868 0.87907 0.92095 0.96923 0.98575 0.93368 0.82765 0.88448 0.84225 0.82118 0.82693 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 10.24 71.98 0.74 -2.53 16 2 C 0.10 2.73 5.95 86.38 0.51 3.24 16 3 N -0.59 -22.75 2.46 -826.15 -2.03 -24.78 16 4 C 0.25 12.85 4.47 85.63 0.38 13.24 16 5 C -0.61 -34.94 9.39 25.60 0.24 -34.70 16 6 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 7 C -0.03 -1.66 5.46 84.65 0.46 -1.19 16 8 N -0.93 -57.27 13.65 21.45 0.29 -56.98 16 9 Si 1.12 52.01 29.90 68.60 2.05 54.06 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.52 18.29 7.32 87.66 0.64 18.93 16 14 O -0.57 -24.82 11.29 -3.04 -0.03 -24.86 16 15 C -0.18 -3.88 5.28 -11.54 -0.06 -3.94 16 16 H 0.15 2.43 6.44 -2.39 -0.02 2.42 16 17 C -0.11 -1.51 9.58 30.62 0.29 -1.22 16 18 C -0.10 -1.71 6.05 -11.51 -0.07 -1.78 16 19 H 0.16 1.85 8.14 -2.39 -0.02 1.83 16 20 C -0.04 -1.13 4.36 -19.86 -0.09 -1.22 16 21 C 0.00 0.09 6.17 22.27 0.14 0.22 16 22 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 23 C -0.06 -1.74 9.56 22.27 0.21 -1.53 16 24 C -0.08 -2.41 6.85 36.37 0.25 -2.16 16 25 N 0.04 1.28 4.45 -46.46 -0.21 1.08 16 26 O -0.19 -6.78 18.45 18.89 0.35 -6.43 16 27 O -0.18 -6.39 18.45 18.89 0.35 -6.04 16 28 C -0.06 -1.66 9.25 22.27 0.21 -1.45 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 2.07 6.00 -2.39 -0.01 2.05 16 33 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 34 H 0.01 0.66 7.94 -2.39 -0.02 0.64 16 35 H 0.00 -0.22 7.29 -2.39 -0.02 -0.23 16 36 H 0.26 15.84 7.22 -92.71 -0.67 15.17 16 37 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 1.45 6.18 -2.39 -0.01 1.44 16 39 H 0.14 3.35 5.79 -2.91 -0.02 3.33 16 40 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.16 4.00 7.61 -2.91 -0.02 3.98 16 42 H 0.16 3.88 7.61 -2.91 -0.02 3.86 16 Total: -1.00 -78.03 356.67 6.00 -72.03 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.15 Total: 11.28 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.08 Total: -19.36 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.94 Total: -80.68 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: 0.66 Total: -37.33 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -78.03 6.00 -72.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.937 kcal (2) G-P(sol) polarization free energy of solvation -78.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds