Wall clock time and date at job start Tue Mar 31 2020 13:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46999 * 2 1 4 4 C 1.46497 * 120.00323 * 270.00363 * 3 2 1 5 5 C 1.50708 * 109.46949 * 270.00040 * 4 3 2 6 6 H 1.08002 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00041 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47348 * 60.00162 * 9 7 5 11 11 H 1.48499 * 109.47016 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47164 * 299.99747 * 9 7 5 13 13 C 1.34779 * 119.99819 * 90.00249 * 3 2 1 14 14 O 1.21286 * 119.99932 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00222 * 359.97438 * 13 3 2 16 16 H 1.09006 * 115.55951 * 325.69365 * 15 13 3 17 17 C 1.52999 * 117.49768 * 111.37464 * 15 13 3 18 18 C 1.52993 * 117.49965 * 180.02562 * 15 13 3 19 19 H 1.08996 * 117.52378 * 359.97438 * 18 15 13 20 20 C 1.50707 * 117.49719 * 145.02575 * 18 15 13 21 21 C 1.38254 * 120.00290 * 60.01130 * 20 18 15 22 22 C 1.38205 * 120.00331 * 180.02562 * 21 20 18 23 23 C 1.38261 * 120.00027 * 0.02562 * 22 21 20 24 24 C 1.38218 * 119.99717 * 359.97438 * 23 22 21 25 25 N 1.48020 * 119.99933 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72765 * 25 24 23 28 28 C 1.38209 * 119.99703 * 240.28592 * 20 18 15 29 29 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46807 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47145 * 59.99786 * 1 2 3 32 32 H 1.09003 * 109.47004 * 240.00437 * 2 1 3 33 33 H 1.09003 * 109.47145 * 120.00214 * 2 1 3 34 34 H 1.09002 * 109.47326 * 29.99553 * 4 3 2 35 35 H 1.08993 * 109.47459 * 150.00417 * 4 3 2 36 36 H 0.97006 * 119.99939 * 179.97438 * 8 7 5 37 37 H 1.09000 * 117.49790 * 0.02562 * 17 15 13 38 38 H 1.08993 * 117.52062 * 214.97609 * 17 15 13 39 39 H 1.08009 * 119.99693 * 0.02562 * 21 20 18 40 40 H 1.08004 * 120.00349 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00485 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00278 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8780 8 7 3.3488 3.1251 -3.6185 9 14 5.9135 2.0969 -3.4168 10 1 6.1418 0.6402 -3.5936 11 1 6.1606 2.7958 -4.7035 12 1 6.8406 2.6212 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9914 1.3063 2.4724 16 1 1.1557 0.6064 2.4734 17 6 3.2077 0.9555 3.3317 18 6 2.2649 2.0815 3.7627 19 1 2.6272 3.1051 3.6681 20 6 1.3587 1.8185 4.9378 21 6 1.2690 0.5459 5.4705 22 6 0.4375 0.3046 6.5477 23 6 -0.3050 1.3359 7.0925 24 6 -0.2153 2.6082 6.5600 25 7 -1.0107 3.7122 7.1428 26 8 -1.7445 3.4993 8.0913 27 8 -0.9279 4.8344 6.6767 28 6 0.6129 2.8485 5.4794 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6749 3.5156 -4.4444 37 1 4.1898 1.2388 2.9532 38 1 3.1725 0.0251 3.8983 39 1 1.8487 -0.2598 5.0446 40 1 0.3671 -0.6896 6.9636 41 1 -0.9550 1.1474 7.9340 42 1 0.6799 3.8418 5.0607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:36 Heat of formation + Delta-G solvation = 10.661145 kcal Electronic energy + Delta-G solvation = -25849.247900 eV Core-core repulsion = 21991.531477 eV Total energy + Delta-G solvation = -3857.716424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37346 -40.43906 -39.19115 -36.77256 -36.59418 -35.29555 -32.84011 -32.21848 -31.51878 -30.18088 -27.53055 -26.83134 -24.79123 -23.95483 -23.09758 -23.01585 -21.85745 -21.11710 -18.92436 -18.81037 -18.41919 -17.71024 -17.22183 -16.75777 -16.44524 -15.89439 -15.50315 -15.16859 -14.57578 -14.43819 -14.11645 -13.67932 -13.59042 -13.42794 -12.79103 -12.65462 -12.53830 -12.22579 -12.01556 -11.76761 -11.69443 -11.56953 -11.41937 -11.31858 -11.28748 -11.06192 -10.97774 -10.84115 -10.58848 -10.55908 -10.18582 -9.95413 -9.71108 -9.33811 -9.00008 -8.48102 -7.75205 -6.09033 -4.14300 -0.42495 0.53086 1.08551 1.17284 2.76585 3.09077 3.27705 3.32829 3.35081 3.65438 3.83836 4.07725 4.09514 4.34884 4.39030 4.46217 4.50368 4.65075 4.70549 4.80178 5.02876 5.12582 5.24275 5.25545 5.29978 5.40139 5.42390 5.55879 5.61518 5.64730 5.70111 5.83779 5.93134 5.96948 6.07596 6.16152 6.21206 6.41620 6.99602 7.38137 7.43523 7.46905 7.86647 8.17491 8.33415 8.83047 8.99844 9.50889 10.99072 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002694 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.463623 B =10390.119555 C =10639.424833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.532 3.468 14 O -0.539 6.539 15 C -0.165 4.165 16 H 0.122 0.878 17 C -0.141 4.141 18 C -0.101 4.101 19 H 0.135 0.865 20 C -0.038 4.038 21 C -0.071 4.071 22 C -0.113 4.113 23 C -0.065 4.065 24 C -0.041 4.041 25 N 0.028 4.972 26 O -0.164 6.164 27 O -0.156 6.156 28 C -0.047 4.047 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -10.611 19.265 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.318 3.682 14 O -0.416 6.416 15 C -0.186 4.186 16 H 0.140 0.860 17 C -0.179 4.179 18 C -0.120 4.120 19 H 0.153 0.847 20 C -0.039 4.039 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.124 4.124 25 N 0.548 4.452 26 O -0.379 6.379 27 O -0.373 6.373 28 C -0.066 4.066 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.622 -10.424 18.757 22.184 hybrid contribution 0.622 0.065 -0.311 0.698 sum -5.000 -10.360 18.446 21.739 Atomic orbital electron populations 1.22243 0.96858 1.01408 1.02373 1.21417 0.93388 0.84182 1.02713 1.48164 1.63259 1.13246 1.07478 1.19294 0.96347 0.93643 0.77962 1.21375 0.96860 1.32121 1.06347 0.92526 1.24935 0.97872 0.94889 0.96366 1.69918 1.35743 1.33274 1.14341 0.86557 0.84738 0.78237 0.77880 1.20258 1.21138 1.20172 1.19271 0.78561 0.86330 0.84026 1.90684 1.46117 1.17874 1.86961 1.22566 1.02024 1.03192 0.90838 0.86028 1.23141 0.95299 0.98511 1.00912 1.21076 0.99999 0.99937 0.90958 0.84720 1.19181 0.96278 0.92369 0.96075 1.21619 0.95993 0.96948 0.94349 1.21181 0.96196 0.99285 0.96485 1.21058 0.98088 0.89770 0.99457 1.21096 1.02031 0.87983 1.01244 1.43642 0.99647 1.02202 0.99734 1.94522 1.35375 1.89670 1.18370 1.94577 1.70686 1.08231 1.63795 1.20938 0.91770 1.01910 0.91953 0.92155 0.93161 0.91951 0.89888 0.91623 0.94939 0.93870 0.92594 0.87069 0.87705 0.83707 0.83434 0.83055 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.12 37.16 0.38 -1.78 16 2 C 0.11 1.60 5.76 -4.04 -0.02 1.58 16 3 N -0.59 -11.87 2.46 -175.05 -0.43 -12.30 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.53 10.39 7.46 -10.98 -0.08 10.31 16 14 O -0.54 -12.98 15.84 5.55 0.09 -12.89 16 15 C -0.16 -2.16 4.43 -91.77 -0.41 -2.57 16 16 H 0.12 1.32 6.48 -51.93 -0.34 0.98 16 17 C -0.14 -1.48 9.56 -26.70 -0.26 -1.74 16 18 C -0.10 -1.17 5.56 -91.74 -0.51 -1.68 16 19 H 0.13 1.82 7.67 -51.93 -0.40 1.42 16 20 C -0.04 -0.36 5.61 -104.62 -0.59 -0.95 16 21 C -0.07 -0.49 9.30 -39.59 -0.37 -0.85 16 22 C -0.11 -0.66 10.05 -39.59 -0.40 -1.06 16 23 C -0.06 -0.50 9.56 -39.58 -0.38 -0.88 16 24 C -0.04 -0.43 6.85 -79.94 -0.55 -0.98 16 25 N 0.03 0.37 4.45 33.96 0.15 0.52 16 26 O -0.16 -2.15 18.45 -29.46 -0.54 -2.69 16 27 O -0.16 -2.22 18.45 -29.46 -0.54 -2.77 16 28 C -0.05 -0.49 9.25 -39.58 -0.37 -0.86 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.79 6.64 -51.93 -0.34 0.45 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.10 0.72 6.18 -51.93 -0.32 0.40 16 39 H 0.15 0.67 6.02 -52.48 -0.32 0.36 16 40 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.15 0.95 7.61 -52.49 -0.40 0.55 16 42 H 0.16 1.70 7.61 -52.49 -0.40 1.30 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -33.78 365.13 -9.41 -43.20 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.36 Total: -0.99 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.99 Total: -8.50 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.46 Total: -37.28 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.00 Total: -18.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.78 -9.41 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.861 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds