Wall clock time and date at job start Tue Mar 31 2020 13:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46999 * 2 1 4 4 C 1.46497 * 120.00323 * 270.00363 * 3 2 1 5 5 C 1.50708 * 109.46949 * 270.00040 * 4 3 2 6 6 H 1.08002 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00041 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99845 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99737 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47348 * 60.00162 * 9 7 5 11 11 H 1.48499 * 109.47016 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47164 * 299.99747 * 9 7 5 13 13 C 1.34779 * 119.99819 * 90.00249 * 3 2 1 14 14 O 1.21286 * 119.99932 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00222 * 359.97438 * 13 3 2 16 16 H 1.09006 * 115.55951 * 325.69365 * 15 13 3 17 17 C 1.52999 * 117.49768 * 111.37464 * 15 13 3 18 18 C 1.52993 * 117.49965 * 180.02562 * 15 13 3 19 19 H 1.08996 * 117.52378 * 359.97438 * 18 15 13 20 20 C 1.50707 * 117.49719 * 145.02575 * 18 15 13 21 21 C 1.38254 * 120.00290 * 60.01130 * 20 18 15 22 22 C 1.38205 * 120.00331 * 180.02562 * 21 20 18 23 23 C 1.38261 * 120.00027 * 0.02562 * 22 21 20 24 24 C 1.38218 * 119.99717 * 359.97438 * 23 22 21 25 25 N 1.48020 * 119.99933 * 179.97438 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72765 * 25 24 23 28 28 C 1.38209 * 119.99703 * 240.28592 * 20 18 15 29 29 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46807 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47145 * 59.99786 * 1 2 3 32 32 H 1.09003 * 109.47004 * 240.00437 * 2 1 3 33 33 H 1.09003 * 109.47145 * 120.00214 * 2 1 3 34 34 H 1.09002 * 109.47326 * 29.99553 * 4 3 2 35 35 H 1.08993 * 109.47459 * 150.00417 * 4 3 2 36 36 H 0.97006 * 119.99939 * 179.97438 * 8 7 5 37 37 H 1.09000 * 117.49790 * 0.02562 * 17 15 13 38 38 H 1.08993 * 117.52062 * 214.97609 * 17 15 13 39 39 H 1.08009 * 119.99693 * 0.02562 * 21 20 18 40 40 H 1.08004 * 120.00349 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00485 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00278 * 359.97438 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8780 8 7 3.3488 3.1251 -3.6185 9 14 5.9135 2.0969 -3.4168 10 1 6.1418 0.6402 -3.5936 11 1 6.1606 2.7958 -4.7035 12 1 6.8406 2.6212 -2.3821 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9914 1.3063 2.4724 16 1 1.1557 0.6064 2.4734 17 6 3.2077 0.9555 3.3317 18 6 2.2649 2.0815 3.7627 19 1 2.6272 3.1051 3.6681 20 6 1.3587 1.8185 4.9378 21 6 1.2690 0.5459 5.4705 22 6 0.4375 0.3046 6.5477 23 6 -0.3050 1.3359 7.0925 24 6 -0.2153 2.6082 6.5600 25 7 -1.0107 3.7122 7.1428 26 8 -1.7445 3.4993 8.0913 27 8 -0.9279 4.8344 6.6767 28 6 0.6129 2.8485 5.4794 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1383 36 1 3.6749 3.5156 -4.4444 37 1 4.1898 1.2388 2.9532 38 1 3.1725 0.0251 3.8983 39 1 1.8487 -0.2598 5.0446 40 1 0.3671 -0.6896 6.9636 41 1 -0.9550 1.1474 7.9340 42 1 0.6799 3.8418 5.0607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:35 Heat of formation + Delta-G solvation = -8.810016 kcal Electronic energy + Delta-G solvation = -25850.092233 eV Core-core repulsion = 21991.531477 eV Total energy + Delta-G solvation = -3858.560757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.29628 -41.43400 -40.35556 -37.76793 -37.67425 -36.85410 -34.89850 -32.88953 -32.27223 -31.62552 -29.35033 -27.67980 -26.23510 -24.92148 -24.51331 -23.75600 -23.18395 -22.01947 -19.95890 -19.75631 -19.61275 -18.65483 -18.63538 -18.23167 -17.59637 -17.29851 -16.52199 -16.33106 -16.05449 -15.66977 -15.02440 -14.94726 -14.66863 -14.36551 -14.30697 -13.72086 -13.64896 -13.45752 -13.28345 -13.09948 -12.98168 -12.76797 -12.64855 -12.53916 -12.39939 -12.36481 -12.31396 -12.17924 -11.94280 -11.86431 -11.76136 -11.57185 -10.68425 -10.66339 -10.53312 -9.99653 -9.46819 -8.24185 -6.39669 -1.27050 -0.10130 0.28363 0.35335 1.35357 1.39860 1.47115 1.62803 2.13957 2.32125 2.42333 2.88858 3.05402 3.16298 3.48280 3.59031 3.69046 3.76786 3.84040 3.90424 3.98710 4.08370 4.20461 4.32787 4.42711 4.61771 4.65756 4.67005 4.77997 4.86009 4.94297 4.96963 5.00289 5.04682 5.06123 5.13190 5.19091 5.28482 5.38139 5.52123 5.55956 5.83875 6.03599 6.41697 6.67790 6.78400 7.26062 7.45795 8.82940 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002694 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.463623 B =10390.119555 C =10639.424833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.969 3.031 10 H -0.257 1.257 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.519 3.481 14 O -0.603 6.603 15 C -0.172 4.172 16 H 0.158 0.842 17 C -0.113 4.113 18 C -0.101 4.101 19 H 0.098 0.902 20 C -0.044 4.044 21 C -0.051 4.051 22 C -0.093 4.093 23 C -0.058 4.058 24 C -0.061 4.061 25 N 0.030 4.970 26 O -0.151 6.151 27 O -0.218 6.218 28 C -0.067 4.067 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.020 0.980 35 H -0.009 1.009 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.184 0.816 40 H 0.196 0.804 41 H 0.170 0.830 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 -15.950 21.614 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.308 3.692 14 O -0.485 6.485 15 C -0.192 4.192 16 H 0.176 0.824 17 C -0.150 4.150 18 C -0.120 4.120 19 H 0.116 0.884 20 C -0.045 4.045 21 C -0.068 4.068 22 C -0.111 4.111 23 C -0.077 4.077 24 C -0.144 4.144 25 N 0.544 4.456 26 O -0.374 6.374 27 O -0.421 6.421 28 C -0.086 4.086 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.038 0.962 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.179 0.821 39 H 0.201 0.799 40 H 0.213 0.787 41 H 0.188 0.812 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.021 -15.726 21.063 26.761 hybrid contribution 0.393 1.639 -0.975 1.947 sum -4.628 -14.087 20.088 24.968 Atomic orbital electron populations 1.22184 0.94905 1.03593 1.01408 1.21777 0.94965 0.81140 1.04276 1.48197 1.63432 1.15232 1.05919 1.18693 0.95477 0.91297 0.80515 1.21677 0.97745 1.32090 1.06541 0.92499 1.25908 1.02553 0.94444 0.96449 1.70056 1.37945 1.34225 1.14816 0.85445 0.78793 0.79159 0.77298 1.18136 1.20570 1.20228 1.20441 0.76909 0.85891 0.85935 1.90646 1.48848 1.20894 1.88109 1.22439 1.05089 1.04259 0.87433 0.82427 1.23362 0.93048 0.99868 0.98747 1.20898 1.01085 0.98893 0.91143 0.88395 1.18997 0.96238 0.93559 0.95738 1.22037 0.95221 0.95947 0.93618 1.21716 0.93870 1.00386 0.95081 1.21499 0.98063 0.88601 0.99490 1.21265 1.02816 0.88138 1.02162 1.44048 0.99532 1.02632 0.99434 1.94465 1.35087 1.89601 1.18201 1.94584 1.72647 1.09764 1.65137 1.20861 0.93158 1.01702 0.92872 0.88236 0.92357 0.94778 0.91025 0.87269 0.96152 0.99074 0.92423 0.89107 0.82134 0.79910 0.78685 0.81238 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.12 71.98 0.73 -3.02 16 2 C 0.10 2.81 5.76 86.38 0.50 3.31 16 3 N -0.60 -24.65 2.46 -826.12 -2.03 -26.68 16 4 C 0.26 14.18 5.16 85.64 0.44 14.62 16 5 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 9 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 C 0.52 20.91 7.46 87.66 0.65 21.56 16 14 O -0.60 -31.39 15.84 -3.05 -0.05 -31.44 16 15 C -0.17 -4.14 4.43 -11.54 -0.05 -4.19 16 16 H 0.16 2.65 6.48 -2.38 -0.02 2.63 16 17 C -0.11 -1.97 9.56 30.61 0.29 -1.67 16 18 C -0.10 -2.25 5.56 -11.52 -0.06 -2.31 16 19 H 0.10 2.91 7.67 -2.39 -0.02 2.89 16 20 C -0.04 -0.73 5.61 -19.87 -0.11 -0.85 16 21 C -0.05 -0.38 9.30 22.27 0.21 -0.17 16 22 C -0.09 -0.47 10.05 22.27 0.22 -0.24 16 23 C -0.06 -0.66 9.56 22.27 0.21 -0.45 16 24 C -0.06 -1.23 6.85 36.38 0.25 -0.98 16 25 N 0.03 0.79 4.45 -46.46 -0.21 0.59 16 26 O -0.15 -3.90 18.45 18.88 0.35 -3.55 16 27 O -0.22 -6.87 18.45 18.89 0.35 -6.52 16 28 C -0.07 -1.43 9.25 22.27 0.21 -1.22 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.11 2.12 6.64 -2.39 -0.02 2.11 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 36 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.16 0.98 6.18 -2.39 -0.01 0.97 16 39 H 0.18 0.02 6.02 -2.91 -0.02 0.00 16 40 H 0.20 -0.69 8.06 -2.91 -0.02 -0.72 16 41 H 0.17 1.36 7.61 -2.91 -0.02 1.34 16 42 H 0.13 3.34 7.61 -2.91 -0.02 3.32 16 Total: -1.00 -84.59 365.13 5.96 -78.64 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.05 Total: 4.59 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.19 Total: -5.64 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.95 Total: -82.58 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: 0.65 Total: -41.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -84.59 5.96 -78.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.826 kcal (2) G-P(sol) polarization free energy of solvation -84.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds