Wall clock time and date at job start Tue Mar 31 2020 13:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47306 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46804 * 120.00246 * 9 7 5 12 12 H 1.48498 * 109.47100 * 239.99886 * 9 7 5 13 13 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 14 14 O 1.21282 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99714 * 359.97438 * 13 3 2 16 16 H 1.09003 * 115.54852 * 34.33703 * 15 13 3 17 17 C 1.52994 * 117.49908 * 248.62145 * 15 13 3 18 18 C 1.53000 * 60.00333 * 252.51131 * 17 15 13 19 19 H 1.08995 * 117.52344 * 252.52137 * 18 17 15 20 20 C 1.50701 * 117.49495 * 107.48796 * 18 17 15 21 21 C 1.38255 * 120.00245 * 351.11015 * 20 18 17 22 22 C 1.38210 * 120.00182 * 179.76561 * 21 20 18 23 23 C 1.38260 * 119.99790 * 0.50723 * 22 21 20 24 24 C 1.38205 * 120.00109 * 359.74495 * 23 22 21 25 25 N 1.48022 * 120.00182 * 179.97438 * 24 23 22 26 26 O 1.21796 * 119.99970 * 180.02562 * 25 24 23 27 27 O 1.21801 * 119.99847 * 0.02684 * 25 24 23 28 28 C 1.38210 * 119.99840 * 171.38125 * 20 18 17 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 35 35 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 36 36 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 37 37 H 1.08996 * 117.50504 * 0.02562 * 17 15 13 38 38 H 1.09000 * 117.49669 * 145.02437 * 17 15 13 39 39 H 1.08007 * 119.99791 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.00316 * 180.22535 * 22 21 20 41 41 H 1.08003 * 119.99753 * 179.72825 * 23 22 21 42 42 H 1.08002 * 120.00020 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.6008 1.2405 2.4169 11 1 6.6215 3.3973 3.5246 12 1 5.9205 1.4182 4.7380 13 6 2.2428 2.0167 -1.1671 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3061 -2.4723 16 1 1.1567 0.6060 -2.4735 17 6 3.2090 0.9562 -3.3312 18 6 2.2661 2.0813 -3.7627 19 1 1.6109 1.8911 -4.6127 20 6 2.7660 3.4968 -3.6312 21 6 3.9527 3.7523 -2.9694 22 6 4.4136 5.0500 -2.8531 23 6 3.6826 6.0939 -3.3893 24 6 2.4937 5.8391 -4.0463 25 7 1.7107 6.9568 -4.6199 26 8 0.6627 6.7322 -5.1984 27 8 2.1146 8.1009 -4.5133 28 6 2.0352 4.5403 -4.1672 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0955 3.1410 1.1385 35 1 1.5818 1.6876 2.0284 36 1 3.6757 3.5176 4.4431 37 1 4.1909 1.2396 -2.9522 38 1 3.1743 0.0256 -3.8976 39 1 4.5213 2.9373 -2.5464 40 1 5.3425 5.2492 -2.3393 41 1 4.0406 7.1085 -3.2945 42 1 1.1058 4.3413 -4.6800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:44 Heat of formation + Delta-G solvation = 19.855661 kcal Electronic energy + Delta-G solvation = -26878.890188 eV Core-core repulsion = 23021.572468 eV Total energy + Delta-G solvation = -3857.317720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99096 -40.45339 -38.74185 -36.53130 -36.36666 -35.31503 -32.88673 -31.66819 -31.09441 -30.22211 -27.56117 -26.37405 -24.63680 -23.83548 -23.12550 -22.60090 -21.87654 -20.86958 -18.94643 -18.52150 -17.90074 -17.35168 -17.11925 -16.58247 -16.36138 -15.63845 -15.36677 -14.73246 -14.59643 -14.10792 -14.01680 -13.66556 -13.45777 -13.26884 -12.74814 -12.57724 -12.35995 -12.08139 -11.92727 -11.61419 -11.44266 -11.35483 -11.29916 -11.05004 -10.99956 -10.99111 -10.89473 -10.86538 -10.63249 -10.55360 -10.25323 -9.73714 -9.50555 -9.09000 -8.54542 -8.36277 -7.79561 -6.14959 -4.20551 0.09743 1.11518 1.59736 1.64525 2.89008 3.20522 3.28472 3.30654 3.51485 3.68830 3.95371 4.29550 4.35723 4.61256 4.66545 4.76190 4.78087 4.90236 5.04595 5.11974 5.18318 5.20061 5.27696 5.45454 5.51816 5.54101 5.63440 5.68902 5.77231 5.82671 5.89773 5.95518 6.13492 6.19985 6.35661 6.39652 6.43072 6.72381 6.94397 7.32497 7.41009 7.80564 7.83285 8.11232 8.27829 8.76864 8.93473 9.45065 10.93095 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004222 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.036067 B = 6630.654465 C = 7779.332217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.530 3.470 14 O -0.532 6.532 15 C -0.174 4.174 16 H 0.126 0.874 17 C -0.146 4.146 18 C -0.093 4.093 19 H 0.124 0.876 20 C -0.041 4.041 21 C 0.015 3.985 22 C -0.124 4.124 23 C -0.051 4.051 24 C -0.059 4.059 25 N 0.038 4.962 26 O -0.175 6.175 27 O -0.174 6.174 28 C -0.052 4.052 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -5.848 -14.706 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.318 5.318 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.316 3.684 14 O -0.411 6.411 15 C -0.195 4.195 16 H 0.144 0.856 17 C -0.184 4.184 18 C -0.111 4.111 19 H 0.142 0.858 20 C -0.042 4.042 21 C -0.003 4.003 22 C -0.143 4.143 23 C -0.071 4.071 24 C -0.142 4.142 25 N 0.554 4.446 26 O -0.389 6.389 27 O -0.388 6.388 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.665 -5.667 -14.205 15.308 hybrid contribution 0.516 0.046 0.585 0.781 sum -0.148 -5.621 -13.621 14.736 Atomic orbital electron populations 1.22234 0.96764 1.01480 1.02382 1.21434 0.93485 0.84143 1.02758 1.48234 1.62799 1.13207 1.07554 1.19291 0.96368 0.93598 0.77999 1.21413 0.96772 1.31981 1.06387 0.92471 1.24935 0.97820 0.94883 0.96382 1.69940 1.35621 1.33243 1.14324 0.86470 0.84586 0.78057 0.78455 1.19836 1.20864 1.20899 1.19392 0.78534 0.86325 0.84135 1.90659 1.46411 1.17807 1.86235 1.22560 1.02323 1.03514 0.91152 0.85591 1.23135 0.94894 0.99051 1.01271 1.20983 1.03308 0.88982 0.97859 0.85796 1.18746 0.94493 0.92931 0.98025 1.21302 0.93246 0.97433 0.88364 1.21048 1.01131 0.91658 1.00453 1.20941 0.91339 1.01502 0.93288 1.20846 0.96982 0.86489 1.09910 1.43650 1.00416 1.02320 0.98251 1.94492 1.11462 1.90790 1.42156 1.94503 1.73830 1.06863 1.63630 1.20549 0.99679 0.89212 0.97675 0.92046 0.93035 0.92103 0.89936 0.91497 0.93914 0.95053 0.92682 0.87713 0.87203 0.84749 0.83987 0.83671 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.12 37.16 0.38 -1.73 16 2 C 0.11 1.54 5.76 -4.04 -0.02 1.51 16 3 N -0.59 -11.26 2.46 -175.06 -0.43 -11.69 16 4 C 0.25 6.06 5.16 -5.19 -0.03 6.03 16 5 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.53 9.59 7.31 -10.99 -0.08 9.51 16 14 O -0.53 -11.34 11.26 5.56 0.06 -11.28 16 15 C -0.17 -2.17 4.80 -91.77 -0.44 -2.61 16 16 H 0.13 1.29 6.48 -51.93 -0.34 0.96 16 17 C -0.15 -1.46 9.57 -26.73 -0.26 -1.71 16 18 C -0.09 -1.02 6.04 -91.77 -0.55 -1.58 16 19 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.04 -0.56 4.38 -104.63 -0.46 -1.02 16 21 C 0.01 0.21 6.16 -39.59 -0.24 -0.03 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.05 -0.73 9.56 -39.59 -0.38 -1.11 16 24 C -0.06 -0.91 6.85 -79.95 -0.55 -1.45 16 25 N 0.04 0.62 4.45 33.96 0.15 0.78 16 26 O -0.18 -2.94 18.45 -29.46 -0.54 -3.49 16 27 O -0.17 -2.96 18.45 -29.46 -0.54 -3.51 16 28 C -0.05 -0.73 9.25 -39.58 -0.37 -1.10 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.07 0.79 6.64 -51.93 -0.34 0.44 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.10 1.14 6.18 -51.93 -0.32 0.82 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.13 1.90 5.76 -52.48 -0.30 1.60 16 40 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.15 1.83 7.61 -52.48 -0.40 1.43 16 42 H 0.14 1.79 7.61 -52.49 -0.40 1.39 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -32.10 357.11 -9.40 -41.49 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.37 Total: 1.58 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.82 Total: -10.14 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.46 Total: -35.89 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.02 Total: -18.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.10 -9.40 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.347 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds