Wall clock time and date at job start Tue Mar 31 2020 13:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47306 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46804 * 120.00246 * 9 7 5 12 12 H 1.48498 * 109.47100 * 239.99886 * 9 7 5 13 13 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 14 14 O 1.21282 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99714 * 359.97438 * 13 3 2 16 16 H 1.09003 * 115.54852 * 34.33703 * 15 13 3 17 17 C 1.52994 * 117.49908 * 248.62145 * 15 13 3 18 18 C 1.53000 * 60.00333 * 252.51131 * 17 15 13 19 19 H 1.08995 * 117.52344 * 252.52137 * 18 17 15 20 20 C 1.50701 * 117.49495 * 107.48796 * 18 17 15 21 21 C 1.38255 * 120.00245 * 351.11015 * 20 18 17 22 22 C 1.38210 * 120.00182 * 179.76561 * 21 20 18 23 23 C 1.38260 * 119.99790 * 0.50723 * 22 21 20 24 24 C 1.38205 * 120.00109 * 359.74495 * 23 22 21 25 25 N 1.48022 * 120.00182 * 179.97438 * 24 23 22 26 26 O 1.21796 * 119.99970 * 180.02562 * 25 24 23 27 27 O 1.21801 * 119.99847 * 0.02684 * 25 24 23 28 28 C 1.38210 * 119.99840 * 171.38125 * 20 18 17 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 35 35 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 36 36 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 37 37 H 1.08996 * 117.50504 * 0.02562 * 17 15 13 38 38 H 1.09000 * 117.49669 * 145.02437 * 17 15 13 39 39 H 1.08007 * 119.99791 * 359.97438 * 21 20 18 40 40 H 1.07999 * 120.00316 * 180.22535 * 22 21 20 41 41 H 1.08003 * 119.99753 * 179.72825 * 23 22 21 42 42 H 1.08002 * 120.00020 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.6008 1.2405 2.4169 11 1 6.6215 3.3973 3.5246 12 1 5.9205 1.4182 4.7380 13 6 2.2428 2.0167 -1.1671 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3061 -2.4723 16 1 1.1567 0.6060 -2.4735 17 6 3.2090 0.9562 -3.3312 18 6 2.2661 2.0813 -3.7627 19 1 1.6109 1.8911 -4.6127 20 6 2.7660 3.4968 -3.6312 21 6 3.9527 3.7523 -2.9694 22 6 4.4136 5.0500 -2.8531 23 6 3.6826 6.0939 -3.3893 24 6 2.4937 5.8391 -4.0463 25 7 1.7107 6.9568 -4.6199 26 8 0.6627 6.7322 -5.1984 27 8 2.1146 8.1009 -4.5133 28 6 2.0352 4.5403 -4.1672 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0955 3.1410 1.1385 35 1 1.5818 1.6876 2.0284 36 1 3.6757 3.5176 4.4431 37 1 4.1909 1.2396 -2.9522 38 1 3.1743 0.0256 -3.8976 39 1 4.5213 2.9373 -2.5464 40 1 5.3425 5.2492 -2.3393 41 1 4.0406 7.1085 -3.2945 42 1 1.1058 4.3413 -4.6800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:43 Heat of formation + Delta-G solvation = 3.079084 kcal Electronic energy + Delta-G solvation = -26879.617675 eV Core-core repulsion = 23021.572468 eV Total energy + Delta-G solvation = -3858.045206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.25898 -41.60788 -39.99788 -37.72744 -37.60046 -36.70778 -34.88366 -32.80263 -32.17318 -31.61453 -29.29900 -27.59653 -26.13982 -24.87080 -24.48424 -23.72786 -23.19612 -21.98050 -20.15875 -19.80648 -19.14672 -18.63716 -18.59877 -18.27269 -17.57845 -17.06205 -16.53618 -16.27041 -15.95189 -15.38405 -15.16860 -14.88579 -14.61940 -14.36120 -14.29070 -13.88182 -13.58344 -13.38084 -13.24180 -13.11033 -12.85238 -12.72212 -12.69061 -12.50332 -12.32942 -12.28410 -12.23201 -12.17947 -11.90011 -11.84342 -11.69003 -11.44364 -10.74627 -10.66658 -10.22331 -9.56069 -9.38584 -8.23166 -6.38187 -1.13822 0.04577 0.38457 0.43985 1.35680 1.37063 1.48656 1.68834 2.25834 2.40573 2.44453 2.99452 3.07035 3.31225 3.56226 3.69997 3.73177 3.82749 3.91638 4.00712 4.11298 4.15766 4.21813 4.41616 4.47229 4.64315 4.69683 4.78026 4.81506 4.86978 4.95162 4.99074 5.02362 5.07734 5.13986 5.19973 5.22404 5.37833 5.39550 5.58272 5.60743 5.86622 6.05358 6.52713 6.70834 6.84648 7.28680 7.52065 8.83827 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004222 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.036067 B = 6630.654465 C = 7779.332217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.598 5.598 4 C 0.265 3.735 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.517 3.483 14 O -0.575 6.575 15 C -0.182 4.182 16 H 0.159 0.841 17 C -0.124 4.124 18 C -0.091 4.091 19 H 0.162 0.838 20 C -0.044 4.044 21 C 0.005 3.995 22 C -0.133 4.133 23 C -0.059 4.059 24 C -0.076 4.076 25 N 0.038 4.962 26 O -0.178 6.178 27 O -0.195 6.195 28 C -0.055 4.055 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.106 0.894 34 H -0.006 1.006 35 H 0.013 0.987 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.153 0.847 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 -8.820 -16.604 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.307 3.693 14 O -0.457 6.457 15 C -0.203 4.203 16 H 0.176 0.824 17 C -0.161 4.161 18 C -0.109 4.109 19 H 0.179 0.821 20 C -0.045 4.045 21 C -0.013 4.013 22 C -0.152 4.152 23 C -0.078 4.078 24 C -0.160 4.160 25 N 0.551 4.449 26 O -0.392 6.392 27 O -0.405 6.405 28 C -0.075 4.075 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.012 0.988 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.171 0.829 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.254 -8.653 -16.131 18.307 hybrid contribution 0.372 0.952 1.190 1.569 sum 0.118 -7.701 -14.941 16.809 Atomic orbital electron populations 1.22172 0.95024 1.03393 1.01476 1.21716 0.94890 0.81566 1.03935 1.48226 1.63531 1.14935 1.06126 1.18634 0.95232 0.91310 0.80491 1.21698 0.97622 1.31503 1.06344 0.92395 1.25848 1.02170 0.94565 0.96560 1.70075 1.37771 1.34464 1.14868 0.85402 0.79254 0.77932 0.78437 1.18509 1.21016 1.19998 1.20441 0.77162 0.86140 0.85588 1.90642 1.48006 1.19883 1.87136 1.22488 1.05150 1.04585 0.88029 0.82403 1.23338 0.93142 1.00194 0.99389 1.21237 1.04254 0.87444 0.97942 0.82090 1.19084 0.93897 0.94543 0.96995 1.21489 0.93902 0.97508 0.88412 1.21295 1.01750 0.91719 1.00442 1.21113 0.91273 1.02173 0.93270 1.21096 0.97454 0.86605 1.10821 1.43856 1.00417 1.02572 0.98076 1.94463 1.11746 1.90810 1.42222 1.94492 1.74099 1.07481 1.64409 1.20817 1.00281 0.88701 0.97654 0.94928 0.91980 0.88687 0.91455 0.87540 0.98803 0.96917 0.92607 0.89078 0.82875 0.84823 0.82682 0.82775 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 10.12 71.98 0.73 -2.93 16 2 C 0.10 2.74 5.76 86.38 0.50 3.24 16 3 N -0.60 -22.90 2.46 -826.16 -2.03 -24.93 16 4 C 0.26 13.63 5.16 85.63 0.44 14.07 16 5 C -0.53 -29.01 9.39 25.60 0.24 -28.77 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 9 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 C 0.52 18.30 7.31 87.66 0.64 18.94 16 14 O -0.58 -24.94 11.26 -3.04 -0.03 -24.98 16 15 C -0.18 -3.85 4.80 -11.54 -0.06 -3.90 16 16 H 0.16 2.35 6.48 -2.39 -0.02 2.34 16 17 C -0.12 -1.89 9.57 30.59 0.29 -1.60 16 18 C -0.09 -1.63 6.04 -11.54 -0.07 -1.70 16 19 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.04 -1.13 4.38 -19.87 -0.09 -1.22 16 21 C 0.01 0.15 6.16 22.27 0.14 0.28 16 22 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 23 C -0.06 -1.71 9.56 22.27 0.21 -1.50 16 24 C -0.08 -2.34 6.85 36.37 0.25 -2.09 16 25 N 0.04 1.26 4.45 -46.46 -0.21 1.05 16 26 O -0.18 -5.93 18.45 18.89 0.35 -5.58 16 27 O -0.20 -6.77 18.45 18.89 0.35 -6.42 16 28 C -0.06 -1.50 9.25 22.27 0.21 -1.29 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.27 7.45 -2.39 -0.02 1.25 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 2.01 8.07 -2.39 -0.02 2.00 16 33 H 0.11 2.05 6.64 -2.39 -0.02 2.03 16 34 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 35 H 0.01 0.69 8.07 -2.39 -0.02 0.67 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.09 1.70 6.18 -2.39 -0.01 1.69 16 38 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 3.73 5.76 -2.91 -0.02 3.71 16 40 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16 42 H 0.16 3.67 7.61 -2.91 -0.02 3.65 16 Total: -1.00 -74.32 357.11 5.90 -68.41 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.05 Total: 13.60 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.12 Total: -11.12 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.95 Total: -79.04 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: 0.66 Total: -36.98 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.32 5.90 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.490 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds