Wall clock time and date at job start Tue Mar 31 2020 12:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 N 1.46507 * 109.46582 * 119.99572 * 2 1 3 13 13 C 1.46501 * 119.99975 * 60.00272 * 12 2 1 14 14 C 1.34775 * 119.99733 * 239.99677 * 12 2 1 15 15 O 1.21279 * 120.00497 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99510 * 180.02562 * 14 12 2 17 17 H 1.09002 * 115.55417 * 34.27823 * 16 14 12 18 18 C 1.53008 * 117.49629 * 248.61028 * 16 14 12 19 19 C 1.52999 * 59.99892 * 252.51329 * 18 16 14 20 20 H 1.08998 * 117.50357 * 107.49104 * 19 18 16 21 21 C 1.50708 * 117.49808 * 252.51309 * 19 18 16 22 22 C 1.38253 * 119.99960 * 8.34822 * 21 19 18 23 23 C 1.38213 * 119.99763 * 179.76824 * 22 21 19 24 24 C 1.38256 * 120.00261 * 0.50527 * 23 22 21 25 25 C 1.38209 * 119.99642 * 359.74999 * 24 23 22 26 26 N 1.48019 * 119.99859 * 179.97438 * 25 24 23 27 27 O 1.21802 * 120.00175 * 180.02562 * 26 25 24 28 28 O 1.21795 * 120.00048 * 0.02562 * 26 25 24 29 29 C 1.38211 * 119.99772 * 188.62213 * 21 19 18 30 30 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 31 31 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 32 32 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47537 * 89.99592 * 13 12 2 35 35 H 1.08995 * 109.46832 * 209.99765 * 13 12 2 36 36 H 1.09005 * 109.47098 * 329.99406 * 13 12 2 37 37 H 1.08999 * 117.50063 * 359.97438 * 18 16 14 38 38 H 1.08998 * 117.50119 * 145.00281 * 18 16 14 39 39 H 1.08007 * 119.99858 * 0.02562 * 22 21 19 40 40 H 1.08009 * 119.99560 * 180.22789 * 23 22 21 41 41 H 1.07997 * 120.00183 * 179.72129 * 24 23 22 42 42 H 1.07998 * 120.00320 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0859 1.1257 1.8917 16 6 3.2958 -0.7461 3.3137 17 1 3.5219 -1.8047 3.1858 18 6 2.7329 -0.3021 4.6654 19 6 4.1712 0.0518 4.2822 20 1 4.3836 1.0906 4.0294 21 6 5.2806 -0.6860 4.9864 22 6 4.9851 -1.7575 5.8086 23 6 6.0030 -2.4372 6.4506 24 6 7.3158 -2.0390 6.2791 25 6 7.6107 -0.9645 5.4613 26 7 9.0162 -0.5378 5.2780 27 8 9.2761 0.4094 4.5578 28 8 9.9128 -1.1339 5.8474 29 6 6.5930 -0.2879 4.8148 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.7043 1.1577 -3.4845 34 1 2.4156 -2.7378 0.9719 35 1 1.6236 -2.2851 2.5003 36 1 0.6903 -2.3001 0.9848 37 1 1.9993 0.5041 4.6649 38 1 2.5887 -1.0686 5.4268 39 1 3.9592 -2.0661 5.9458 40 1 5.7724 -3.2766 7.0900 41 1 8.1108 -2.5672 6.7843 42 1 6.8235 0.5517 4.1758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:37 Heat of formation + Delta-G solvation = 16.420454 kcal Electronic energy + Delta-G solvation = -25849.059547 eV Core-core repulsion = 21991.592865 eV Total energy + Delta-G solvation = -3857.466681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35560 -40.43644 -39.19986 -36.78436 -36.66270 -35.25905 -32.89468 -32.20746 -31.52877 -29.52467 -26.83001 -26.24658 -25.29918 -24.72597 -23.85814 -22.97808 -21.32005 -20.61985 -18.88974 -18.79643 -18.35949 -17.69097 -17.24688 -16.81431 -16.37393 -15.86693 -15.38184 -15.12770 -14.61597 -14.50191 -14.23997 -13.67651 -13.46404 -12.85465 -12.72248 -12.65148 -12.38185 -12.17993 -11.76251 -11.71223 -11.62247 -11.53579 -11.39202 -11.29728 -11.14728 -11.04376 -10.87603 -10.77161 -10.61572 -10.30629 -10.20923 -9.94313 -9.37214 -9.22020 -9.03117 -8.47377 -7.68021 -6.11745 -4.20213 -0.40906 0.54114 1.10014 1.19162 2.75411 3.06717 3.25127 3.30645 3.32370 3.65173 3.84008 4.05629 4.10422 4.35061 4.35682 4.46923 4.49826 4.64468 4.69892 4.80122 5.04972 5.17284 5.22097 5.24750 5.39182 5.41693 5.60288 5.64476 5.66253 5.80946 5.91775 5.97960 6.06296 6.21971 6.22818 6.69538 6.75185 6.98539 7.34718 7.44766 7.45502 7.65945 7.95454 8.13635 8.44349 8.76582 8.95384 9.46593 10.93482 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002880 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.311432 B = 9719.785107 C =10612.253181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.587 5.587 13 C 0.087 3.913 14 C 0.530 3.470 15 O -0.550 6.550 16 C -0.163 4.163 17 H 0.123 0.877 18 C -0.142 4.142 19 C -0.100 4.100 20 H 0.135 0.865 21 C -0.039 4.039 22 C -0.071 4.071 23 C -0.113 4.113 24 C -0.064 4.064 25 C -0.041 4.041 26 N 0.028 4.972 27 O -0.155 6.155 28 O -0.164 6.164 29 C -0.046 4.046 30 H 0.011 0.989 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -8.401 19.725 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.317 5.317 13 C -0.057 4.057 14 C 0.316 3.684 15 O -0.429 6.429 16 C -0.185 4.185 17 H 0.140 0.860 18 C -0.179 4.179 19 C -0.118 4.118 20 H 0.153 0.847 21 C -0.040 4.040 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.083 4.083 25 C -0.123 4.123 26 N 0.548 4.452 27 O -0.372 6.372 28 O -0.379 6.379 29 C -0.065 4.065 30 H 0.030 0.970 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.039 -7.883 19.520 21.435 hybrid contribution 0.720 -0.590 -1.040 1.396 sum 4.760 -8.473 18.480 20.879 Atomic orbital electron populations 1.22103 0.98140 0.99395 1.00918 1.18967 0.90902 0.94483 0.79811 0.91886 1.21269 1.31879 1.13226 0.90298 0.92360 1.24892 0.94897 0.94947 0.98984 1.69861 1.36074 1.22689 1.23951 0.86547 0.79321 0.79536 0.81944 1.20218 1.21098 1.20206 1.48159 1.48505 1.11698 1.23327 1.21567 1.01668 0.83138 0.99342 1.19335 0.79189 0.86542 0.83322 1.90660 1.58545 1.17029 1.76682 1.22525 1.04327 1.00343 0.91269 0.85958 1.23124 0.95432 1.03674 0.95708 1.21061 0.89183 1.00489 1.01065 0.84728 1.19169 0.92490 0.95634 0.96702 1.21607 1.00831 0.93191 0.93284 1.21180 0.90847 1.00665 1.00475 1.21057 0.98751 0.93482 0.95053 1.21095 0.81112 1.02432 1.07685 1.43638 1.03281 0.99635 0.98684 1.94580 1.89207 1.18860 1.34602 1.94519 1.39958 1.55402 1.48038 1.20943 0.90582 0.98973 0.96004 0.96978 0.88690 0.95068 0.92560 0.93364 0.92838 0.90756 0.87251 0.87674 0.83729 0.83434 0.83042 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.95 37.16 0.33 -3.08 16 2 C 0.26 6.44 2.64 -69.08 -0.18 6.26 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.77 5.31 -17.82 -0.09 1.67 16 7 N -0.89 -24.85 11.31 55.43 0.63 -24.22 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.59 -11.93 2.75 -175.26 -0.48 -12.42 16 13 C 0.09 1.36 9.25 59.85 0.55 1.91 16 14 C 0.53 10.27 7.46 -10.99 -0.08 10.19 16 15 O -0.55 -12.92 15.59 5.56 0.09 -12.83 16 16 C -0.16 -2.13 4.44 -91.77 -0.41 -2.54 16 17 H 0.12 1.37 7.26 -51.93 -0.38 0.99 16 18 C -0.14 -1.38 9.56 -26.73 -0.26 -1.64 16 19 C -0.10 -1.13 5.55 -91.77 -0.51 -1.64 16 20 H 0.13 1.77 7.67 -51.93 -0.40 1.37 16 21 C -0.04 -0.37 5.61 -104.62 -0.59 -0.96 16 22 C -0.07 -0.49 9.30 -39.59 -0.37 -0.86 16 23 C -0.11 -0.68 10.05 -39.58 -0.40 -1.08 16 24 C -0.06 -0.52 9.56 -39.59 -0.38 -0.90 16 25 C -0.04 -0.44 6.85 -79.95 -0.55 -0.99 16 26 N 0.03 0.37 4.45 33.96 0.15 0.52 16 27 O -0.16 -2.28 18.45 -29.46 -0.54 -2.82 16 28 O -0.16 -2.20 18.45 -29.46 -0.54 -2.74 16 29 C -0.05 -0.50 9.25 -39.58 -0.37 -0.86 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 32 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.63 6.64 -51.93 -0.34 0.28 16 36 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 37 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 0.66 6.17 -51.93 -0.32 0.34 16 39 H 0.15 0.65 6.02 -52.48 -0.32 0.34 16 40 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.15 0.99 7.61 -52.49 -0.40 0.59 16 42 H 0.16 1.75 7.61 -52.49 -0.40 1.35 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -32.44 357.46 -9.05 -41.50 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.14 Total: 0.64 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.58 Total: -8.89 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.30 Total: -36.12 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.00 Total: -18.39 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.44 -9.05 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.917 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds