Wall clock time and date at job start Tue Mar 31 2020 12:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 N 1.46507 * 109.46582 * 119.99572 * 2 1 3 13 13 C 1.46501 * 119.99975 * 60.00272 * 12 2 1 14 14 C 1.34775 * 119.99733 * 239.99677 * 12 2 1 15 15 O 1.21279 * 120.00497 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99510 * 180.02562 * 14 12 2 17 17 H 1.09002 * 115.55417 * 34.27823 * 16 14 12 18 18 C 1.53008 * 117.49629 * 248.61028 * 16 14 12 19 19 C 1.52999 * 59.99892 * 252.51329 * 18 16 14 20 20 H 1.08998 * 117.50357 * 107.49104 * 19 18 16 21 21 C 1.50708 * 117.49808 * 252.51309 * 19 18 16 22 22 C 1.38253 * 119.99960 * 8.34822 * 21 19 18 23 23 C 1.38213 * 119.99763 * 179.76824 * 22 21 19 24 24 C 1.38256 * 120.00261 * 0.50527 * 23 22 21 25 25 C 1.38209 * 119.99642 * 359.74999 * 24 23 22 26 26 N 1.48019 * 119.99859 * 179.97438 * 25 24 23 27 27 O 1.21802 * 120.00175 * 180.02562 * 26 25 24 28 28 O 1.21795 * 120.00048 * 0.02562 * 26 25 24 29 29 C 1.38211 * 119.99772 * 188.62213 * 21 19 18 30 30 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 31 31 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 32 32 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47537 * 89.99592 * 13 12 2 35 35 H 1.08995 * 109.46832 * 209.99765 * 13 12 2 36 36 H 1.09005 * 109.47098 * 329.99406 * 13 12 2 37 37 H 1.08999 * 117.50063 * 359.97438 * 18 16 14 38 38 H 1.08998 * 117.50119 * 145.00281 * 18 16 14 39 39 H 1.08007 * 119.99858 * 0.02562 * 22 21 19 40 40 H 1.08009 * 119.99560 * 180.22789 * 23 22 21 41 41 H 1.07997 * 120.00183 * 179.72129 * 24 23 22 42 42 H 1.07998 * 120.00320 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0859 1.1257 1.8917 16 6 3.2958 -0.7461 3.3137 17 1 3.5219 -1.8047 3.1858 18 6 2.7329 -0.3021 4.6654 19 6 4.1712 0.0518 4.2822 20 1 4.3836 1.0906 4.0294 21 6 5.2806 -0.6860 4.9864 22 6 4.9851 -1.7575 5.8086 23 6 6.0030 -2.4372 6.4506 24 6 7.3158 -2.0390 6.2791 25 6 7.6107 -0.9645 5.4613 26 7 9.0162 -0.5378 5.2780 27 8 9.2761 0.4094 4.5578 28 8 9.9128 -1.1339 5.8474 29 6 6.5930 -0.2879 4.8148 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 0.7043 1.1577 -3.4845 34 1 2.4156 -2.7378 0.9719 35 1 1.6236 -2.2851 2.5003 36 1 0.6903 -2.3001 0.9848 37 1 1.9993 0.5041 4.6649 38 1 2.5887 -1.0686 5.4268 39 1 3.9592 -2.0661 5.9458 40 1 5.7724 -3.2766 7.0900 41 1 8.1108 -2.5672 6.7843 42 1 6.8235 0.5517 4.1758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:36 Heat of formation + Delta-G solvation = -2.008503 kcal Electronic energy + Delta-G solvation = -25849.858686 eV Core-core repulsion = 21991.592865 eV Total energy + Delta-G solvation = -3858.265821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30505 -41.42302 -40.37234 -37.87903 -37.72543 -36.87251 -34.79770 -32.89628 -32.33025 -31.32290 -27.70641 -27.61237 -27.31673 -25.88073 -24.77565 -23.68942 -22.49109 -21.93177 -19.93447 -19.76679 -19.60039 -18.66289 -18.56541 -18.18949 -17.58419 -17.29365 -16.54084 -16.19328 -16.08001 -15.79898 -15.03888 -14.92970 -14.50499 -14.32594 -14.00930 -13.72911 -13.48972 -13.43081 -13.08674 -12.96415 -12.91566 -12.77340 -12.73096 -12.63881 -12.39055 -12.37281 -12.31076 -12.19751 -12.16531 -11.87430 -11.59274 -11.21618 -10.72627 -10.55806 -10.49893 -9.99493 -9.34600 -8.17582 -6.34632 -1.27579 -0.10340 0.27802 0.34976 1.38433 1.41307 1.48270 1.60922 2.17965 2.30187 2.46640 2.88755 3.10170 3.17738 3.47794 3.59790 3.71096 3.77988 3.84591 3.90789 3.99081 4.15200 4.33139 4.48764 4.65161 4.66830 4.70993 4.77457 4.80540 4.87065 4.89062 5.00610 5.03143 5.05093 5.06908 5.12868 5.28353 5.43938 5.51940 5.61838 5.64887 6.01928 6.13992 6.41042 6.73513 6.82709 7.29392 7.46301 8.86287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015902 B = 0.002880 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.311432 B = 9719.785107 C =10612.253181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.280 1.280 12 N -0.596 5.596 13 C 0.082 3.918 14 C 0.516 3.484 15 O -0.609 6.609 16 C -0.174 4.174 17 H 0.154 0.846 18 C -0.107 4.107 19 C -0.104 4.104 20 H 0.099 0.901 21 C -0.046 4.046 22 C -0.050 4.050 23 C -0.093 4.093 24 C -0.059 4.059 25 C -0.061 4.061 26 N 0.029 4.971 27 O -0.219 6.219 28 O -0.151 6.151 29 C -0.068 4.068 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.160 0.840 39 H 0.186 0.814 40 H 0.196 0.804 41 H 0.170 0.830 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -12.949 22.744 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.184 1.184 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.326 5.326 13 C -0.060 4.060 14 C 0.305 3.695 15 O -0.493 6.493 16 C -0.194 4.194 17 H 0.172 0.828 18 C -0.143 4.143 19 C -0.123 4.123 20 H 0.117 0.883 21 C -0.046 4.046 22 C -0.068 4.068 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.144 4.144 26 N 0.543 4.457 27 O -0.422 6.422 28 O -0.373 6.373 29 C -0.087 4.087 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.178 0.822 39 H 0.203 0.797 40 H 0.213 0.787 41 H 0.187 0.813 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.929 -12.385 22.492 25.843 hybrid contribution 1.045 0.784 -1.860 2.273 sum 3.974 -11.601 20.633 24.001 Atomic orbital electron populations 1.21870 0.96894 1.00263 1.00007 1.18517 0.91801 0.92006 0.81781 0.97750 1.21563 1.31856 1.13259 0.91298 0.92276 1.25736 0.95071 0.95617 1.02030 1.70011 1.37094 1.23979 1.24516 0.85540 0.78274 0.79170 0.78225 1.18411 1.20822 1.20582 1.48162 1.48728 1.13584 1.22090 1.21850 1.01354 0.80010 1.02745 1.20488 0.78039 0.86157 0.84789 1.90628 1.60410 1.19977 1.78252 1.22400 1.06603 1.01039 0.89407 0.82839 1.23366 0.93217 1.03917 0.93824 1.20906 0.91287 0.98925 1.01142 0.88317 1.19036 0.90699 0.96970 0.97933 1.22048 1.03112 0.90882 0.90747 1.21727 0.89056 1.00872 0.99475 1.21499 1.00720 0.91924 0.93608 1.21276 0.79074 1.04241 1.09854 1.44054 1.04464 0.99143 0.98023 1.94586 1.89965 1.20733 1.36918 1.94460 1.41154 1.54635 1.47057 1.20878 0.91895 0.99155 0.96803 0.95927 0.91514 0.93108 0.92601 0.92993 0.87795 0.91188 0.88482 0.82201 0.79737 0.78671 0.81264 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.95 71.98 0.64 -5.60 16 2 C 0.26 13.54 2.64 44.24 0.12 13.66 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.55 8.37 25.60 0.21 -29.33 16 5 H 0.06 3.13 7.65 -2.92 -0.02 3.11 16 6 C 0.02 0.84 5.31 84.66 0.45 1.28 16 7 N -0.92 -53.19 11.31 21.45 0.24 -52.94 16 8 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.60 -24.30 2.75 -826.78 -2.28 -26.58 16 13 C 0.08 2.35 9.25 127.77 1.18 3.53 16 14 C 0.52 20.37 7.46 87.66 0.65 21.02 16 15 O -0.61 -30.80 15.59 -3.02 -0.05 -30.84 16 16 C -0.17 -4.12 4.44 -11.54 -0.05 -4.17 16 17 H 0.15 2.67 7.26 -2.39 -0.02 2.66 16 18 C -0.11 -1.63 9.56 30.60 0.29 -1.34 16 19 C -0.10 -2.24 5.55 -11.54 -0.06 -2.31 16 20 H 0.10 2.85 7.67 -2.39 -0.02 2.83 16 21 C -0.05 -0.76 5.61 -19.86 -0.11 -0.88 16 22 C -0.05 -0.38 9.30 22.27 0.21 -0.17 16 23 C -0.09 -0.51 10.05 22.27 0.22 -0.29 16 24 C -0.06 -0.72 9.56 22.27 0.21 -0.50 16 25 C -0.06 -1.30 6.85 36.37 0.25 -1.05 16 26 N 0.03 0.81 4.45 -46.46 -0.21 0.60 16 27 O -0.22 -7.11 18.45 18.88 0.35 -6.76 16 28 O -0.15 -4.00 18.45 18.89 0.35 -3.65 16 29 C -0.07 -1.51 9.25 22.27 0.21 -1.30 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 3.55 6.06 -2.38 -0.01 3.53 16 32 H 0.05 2.15 6.66 -2.39 -0.02 2.13 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.90 6.64 -2.39 -0.02 1.88 16 36 H 0.07 2.05 6.43 -2.38 -0.02 2.04 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.16 0.71 6.17 -2.39 -0.01 0.70 16 39 H 0.19 -0.03 6.02 -2.91 -0.02 -0.05 16 40 H 0.20 -0.61 8.06 -2.91 -0.02 -0.64 16 41 H 0.17 1.48 7.61 -2.91 -0.02 1.46 16 42 H 0.13 3.43 7.61 -2.91 -0.02 3.41 16 Total: -1.00 -80.87 357.46 5.92 -74.95 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.42 Total: -7.45 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.24 Total: -78.91 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: 0.65 Total: -41.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -80.87 5.92 -74.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.944 kcal (2) G-P(sol) polarization free energy of solvation -80.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds