Wall clock time and date at job start Tue Mar 31 2020 12:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.50706 * 109.47159 * 240.00072 * 2 1 3 5 5 H 1.08001 * 120.00265 * 239.99755 * 4 2 1 6 6 C 1.37885 * 119.99578 * 60.00022 * 4 2 1 7 7 N 1.31510 * 119.99946 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99671 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47441 * 89.99721 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99679 * 8 6 4 11 11 H 1.48502 * 109.47367 * 329.99452 * 8 6 4 12 12 N 1.46497 * 109.47478 * 120.00473 * 2 1 3 13 13 C 1.46500 * 120.00323 * 59.99845 * 12 2 1 14 14 C 1.34779 * 119.99858 * 239.99959 * 12 2 1 15 15 O 1.21286 * 119.99932 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00222 * 179.97438 * 14 12 2 17 17 H 1.09006 * 115.55951 * 325.69365 * 16 14 12 18 18 C 1.52999 * 117.49768 * 111.37464 * 16 14 12 19 19 C 1.52993 * 117.49965 * 180.02562 * 16 14 12 20 20 H 1.08996 * 117.52378 * 359.97438 * 19 16 14 21 21 C 1.50707 * 117.49719 * 145.02575 * 19 16 14 22 22 C 1.38254 * 120.00290 * 60.01130 * 21 19 16 23 23 C 1.38205 * 120.00331 * 180.02562 * 22 21 19 24 24 C 1.38261 * 120.00027 * 0.02562 * 23 22 21 25 25 C 1.38218 * 119.99717 * 359.97438 * 24 23 22 26 26 N 1.48020 * 119.99933 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99894 * 359.97438 * 26 25 24 28 28 O 1.21799 * 119.99903 * 179.72765 * 26 25 24 29 29 C 1.38209 * 119.99703 * 240.28592 * 21 19 16 30 30 H 1.09001 * 109.46951 * 59.99861 * 1 2 3 31 31 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47081 * 299.99418 * 1 2 3 33 33 H 0.96998 * 119.99499 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46820 * 270.00402 * 13 12 2 35 35 H 1.09003 * 109.46886 * 29.99998 * 13 12 2 36 36 H 1.09003 * 109.47347 * 150.00273 * 13 12 2 37 37 H 1.09000 * 117.49790 * 0.02562 * 18 16 14 38 38 H 1.08997 * 117.50604 * 214.98471 * 18 16 14 39 39 H 1.08009 * 119.99693 * 0.02562 * 22 21 19 40 40 H 1.08004 * 120.00349 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.00485 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00278 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0858 1.1256 1.8916 16 6 3.2953 -0.7459 3.3139 17 1 2.6163 -1.4843 3.7406 18 6 4.7957 -1.0319 3.4019 19 6 4.1700 0.0521 4.2827 20 1 4.3831 1.0908 4.0302 21 6 4.0274 -0.2432 5.7537 22 6 4.2870 -1.5142 6.2320 23 6 4.1557 -1.7852 7.5808 24 6 3.7642 -0.7854 8.4519 25 6 3.5046 0.4852 7.9737 26 7 3.0849 1.5555 8.9062 27 8 2.9678 1.3163 10.0947 28 8 2.8610 2.6764 8.4855 29 6 3.6315 0.7550 6.6237 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7087 1.1613 -3.4843 34 1 0.7376 -2.1445 1.9993 35 1 1.5296 -2.5969 0.4706 36 1 2.4630 -2.5820 1.9862 37 1 5.4198 -0.7060 2.5698 38 1 5.1041 -1.9583 3.8864 39 1 4.5925 -2.2953 5.5514 40 1 4.3581 -2.7781 7.9544 41 1 3.6611 -0.9972 9.5058 42 1 3.4248 1.7468 6.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:41 Heat of formation + Delta-G solvation = 15.439073 kcal Electronic energy + Delta-G solvation = -25809.321198 eV Core-core repulsion = 21951.811961 eV Total energy + Delta-G solvation = -3857.509237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37684 -40.44060 -39.20014 -36.79571 -36.66797 -35.25291 -32.90210 -32.22303 -31.53725 -29.52537 -26.84761 -26.21639 -25.31286 -24.73248 -23.85652 -22.99244 -21.31426 -20.62121 -18.90840 -18.81089 -18.38826 -17.71353 -17.25687 -16.83868 -16.31197 -15.87280 -15.38033 -15.20045 -14.65224 -14.48306 -14.19650 -13.68772 -13.40510 -12.92019 -12.73424 -12.55589 -12.36163 -12.16591 -11.78683 -11.76288 -11.65576 -11.48645 -11.41330 -11.32191 -11.13601 -11.11149 -10.89376 -10.73891 -10.60460 -10.32802 -10.22721 -9.95774 -9.36828 -9.23356 -9.02475 -8.48957 -7.68227 -6.13092 -4.21639 -0.42835 0.52630 1.08202 1.16922 2.75222 3.06074 3.21613 3.29213 3.31226 3.65483 3.82525 4.07626 4.09045 4.33345 4.34527 4.46000 4.49384 4.64705 4.69591 4.81008 5.04238 5.17231 5.19597 5.24055 5.39745 5.41681 5.60957 5.63950 5.68070 5.83221 5.92042 5.94591 6.06088 6.20830 6.28919 6.69530 6.77606 6.99993 7.33913 7.43195 7.46319 7.65197 7.94939 8.13154 8.43953 8.75539 8.95241 9.44995 10.92272 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.002568 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.293162 B =10900.707349 C =11404.762741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.586 5.586 13 C 0.084 3.916 14 C 0.530 3.470 15 O -0.550 6.550 16 C -0.164 4.164 17 H 0.122 0.878 18 C -0.141 4.141 19 C -0.101 4.101 20 H 0.135 0.865 21 C -0.039 4.039 22 C -0.071 4.071 23 C -0.113 4.113 24 C -0.064 4.064 25 C -0.041 4.041 26 N 0.028 4.972 27 O -0.164 6.164 28 O -0.156 6.156 29 C -0.047 4.047 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.011 0.989 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -9.031 18.661 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.317 5.317 13 C -0.060 4.060 14 C 0.316 3.684 15 O -0.429 6.429 16 C -0.185 4.185 17 H 0.140 0.860 18 C -0.178 4.178 19 C -0.119 4.119 20 H 0.153 0.847 21 C -0.040 4.040 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.084 4.084 25 C -0.124 4.124 26 N 0.548 4.452 27 O -0.379 6.379 28 O -0.373 6.373 29 C -0.066 4.066 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.570 -8.820 17.929 21.033 hybrid contribution 0.004 -0.339 -0.606 0.694 sum 6.574 -9.159 17.323 20.669 Atomic orbital electron populations 1.22089 0.98131 0.99429 1.00870 1.18969 0.90918 0.94518 0.79797 0.91881 1.21300 1.32004 1.13071 0.90255 0.92223 1.24901 0.94919 0.94955 0.99000 1.69876 1.36198 1.22515 1.23857 0.86488 0.79154 0.79312 0.82389 1.20588 1.21053 1.19941 1.48156 1.48526 1.11652 1.23317 1.21611 0.98696 0.83284 1.02444 1.19349 0.79337 0.86542 0.83168 1.90662 1.58680 1.16904 1.76673 1.22513 0.95312 1.02927 0.97733 0.86034 1.23137 0.93598 0.99166 1.01897 1.21075 1.04695 0.99887 0.86263 0.84730 1.19178 0.97930 0.92568 0.94278 1.21620 0.94691 0.96652 0.95931 1.21184 0.99771 0.99484 0.92706 1.21060 0.95168 0.89877 1.02246 1.21097 1.12101 0.88922 0.90246 1.43640 0.97941 1.02036 1.01600 1.94523 1.55956 1.88156 0.99294 1.94576 1.53095 1.07707 1.81920 1.20935 0.94104 1.01893 0.89624 0.88766 0.95147 0.97011 0.92601 0.93967 0.89992 0.92699 0.87098 0.87678 0.83698 0.83424 0.83047 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.12 16 2 C 0.26 6.42 2.64 -69.08 -0.18 6.24 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.85 7.99 -34.43 -0.28 -14.12 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.59 -11.92 2.75 -175.26 -0.48 -12.40 16 13 C 0.08 1.31 9.00 59.85 0.54 1.84 16 14 C 0.53 10.27 7.46 -10.98 -0.08 10.19 16 15 O -0.55 -12.92 15.59 5.55 0.09 -12.83 16 16 C -0.16 -2.13 4.43 -91.77 -0.41 -2.54 16 17 H 0.12 1.32 7.26 -51.93 -0.38 0.94 16 18 C -0.14 -1.44 9.56 -26.70 -0.26 -1.70 16 19 C -0.10 -1.14 5.56 -91.74 -0.51 -1.65 16 20 H 0.13 1.77 7.67 -51.93 -0.40 1.38 16 21 C -0.04 -0.36 5.61 -104.62 -0.59 -0.95 16 22 C -0.07 -0.48 9.30 -39.59 -0.37 -0.85 16 23 C -0.11 -0.66 10.05 -39.59 -0.40 -1.06 16 24 C -0.06 -0.50 9.56 -39.58 -0.38 -0.88 16 25 C -0.04 -0.43 6.85 -79.94 -0.55 -0.98 16 26 N 0.03 0.37 4.45 33.96 0.15 0.52 16 27 O -0.16 -2.15 18.45 -29.46 -0.54 -2.69 16 28 O -0.16 -2.22 18.45 -29.46 -0.54 -2.76 16 29 C -0.05 -0.49 9.25 -39.58 -0.37 -0.85 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 31 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 36 H 0.05 0.67 6.64 -51.93 -0.34 0.32 16 37 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.11 0.71 6.18 -51.93 -0.32 0.39 16 39 H 0.15 0.67 6.02 -52.48 -0.32 0.35 16 40 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 41 H 0.15 0.95 7.61 -52.49 -0.40 0.55 16 42 H 0.16 1.68 7.61 -52.49 -0.40 1.28 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -32.09 358.17 -9.11 -41.20 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.20 Total: 0.94 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.58 Total: -8.81 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.00 Total: -18.28 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.09 -9.11 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.639 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds