Wall clock time and date at job start Tue Mar 31 2020 12:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.50706 * 109.47159 * 240.00072 * 2 1 3 5 5 H 1.08001 * 120.00265 * 239.99755 * 4 2 1 6 6 C 1.37885 * 119.99578 * 60.00022 * 4 2 1 7 7 N 1.31510 * 119.99946 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99671 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47441 * 89.99721 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99679 * 8 6 4 11 11 H 1.48502 * 109.47367 * 329.99452 * 8 6 4 12 12 N 1.46497 * 109.47478 * 120.00473 * 2 1 3 13 13 C 1.46500 * 120.00323 * 59.99845 * 12 2 1 14 14 C 1.34779 * 119.99858 * 239.99959 * 12 2 1 15 15 O 1.21286 * 119.99932 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00222 * 179.97438 * 14 12 2 17 17 H 1.09006 * 115.55951 * 325.69365 * 16 14 12 18 18 C 1.52999 * 117.49768 * 111.37464 * 16 14 12 19 19 C 1.52993 * 117.49965 * 180.02562 * 16 14 12 20 20 H 1.08996 * 117.52378 * 359.97438 * 19 16 14 21 21 C 1.50707 * 117.49719 * 145.02575 * 19 16 14 22 22 C 1.38254 * 120.00290 * 60.01130 * 21 19 16 23 23 C 1.38205 * 120.00331 * 180.02562 * 22 21 19 24 24 C 1.38261 * 120.00027 * 0.02562 * 23 22 21 25 25 C 1.38218 * 119.99717 * 359.97438 * 24 23 22 26 26 N 1.48020 * 119.99933 * 179.97438 * 25 24 23 27 27 O 1.21803 * 119.99894 * 359.97438 * 26 25 24 28 28 O 1.21799 * 119.99903 * 179.72765 * 26 25 24 29 29 C 1.38209 * 119.99703 * 240.28592 * 21 19 16 30 30 H 1.09001 * 109.46951 * 59.99861 * 1 2 3 31 31 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47081 * 299.99418 * 1 2 3 33 33 H 0.96998 * 119.99499 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46820 * 270.00402 * 13 12 2 35 35 H 1.09003 * 109.46886 * 29.99998 * 13 12 2 36 36 H 1.09003 * 109.47347 * 150.00273 * 13 12 2 37 37 H 1.09000 * 117.49790 * 0.02562 * 18 16 14 38 38 H 1.08997 * 117.50604 * 214.98471 * 18 16 14 39 39 H 1.08009 * 119.99693 * 0.02562 * 22 21 19 40 40 H 1.08004 * 120.00349 * 179.97438 * 23 22 21 41 41 H 1.07992 * 120.00485 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00278 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0858 1.1256 1.8916 16 6 3.2953 -0.7459 3.3139 17 1 2.6163 -1.4843 3.7406 18 6 4.7957 -1.0319 3.4019 19 6 4.1700 0.0521 4.2827 20 1 4.3831 1.0908 4.0302 21 6 4.0274 -0.2432 5.7537 22 6 4.2870 -1.5142 6.2320 23 6 4.1557 -1.7852 7.5808 24 6 3.7642 -0.7854 8.4519 25 6 3.5046 0.4852 7.9737 26 7 3.0849 1.5555 8.9062 27 8 2.9678 1.3163 10.0947 28 8 2.8610 2.6764 8.4855 29 6 3.6315 0.7550 6.6237 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7087 1.1613 -3.4843 34 1 0.7376 -2.1445 1.9993 35 1 1.5296 -2.5969 0.4706 36 1 2.4630 -2.5820 1.9862 37 1 5.4198 -0.7060 2.5698 38 1 5.1041 -1.9583 3.8864 39 1 4.5925 -2.2953 5.5514 40 1 4.3581 -2.7781 7.9544 41 1 3.6611 -0.9972 9.5058 42 1 3.4248 1.7468 6.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:40 Heat of formation + Delta-G solvation = -2.547771 kcal Electronic energy + Delta-G solvation = -25810.101166 eV Core-core repulsion = 21951.811961 eV Total energy + Delta-G solvation = -3858.289205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.29732 -41.42175 -40.37005 -37.87668 -37.71846 -36.86898 -34.78490 -32.89410 -32.32937 -31.32739 -27.69906 -27.57056 -27.33807 -25.88506 -24.78889 -23.68704 -22.47514 -21.93755 -19.95551 -19.76052 -19.60356 -18.65552 -18.61640 -18.09048 -17.58653 -17.29002 -16.52852 -16.23955 -16.08187 -15.75786 -14.99954 -14.91685 -14.46116 -14.33374 -14.00142 -13.67357 -13.55832 -13.42916 -13.10758 -12.95553 -12.88100 -12.76623 -12.72894 -12.66542 -12.39064 -12.36589 -12.31423 -12.23315 -12.14218 -11.87027 -11.59498 -11.21138 -10.72500 -10.55534 -10.49319 -9.99590 -9.34255 -8.16113 -6.33184 -1.27164 -0.10241 0.28212 0.35153 1.40734 1.42542 1.52255 1.61055 2.15248 2.33268 2.47271 2.89030 3.12123 3.17619 3.48132 3.60009 3.71563 3.77512 3.84442 3.90826 3.99174 4.13486 4.33146 4.50946 4.65319 4.66578 4.73130 4.76011 4.79020 4.85329 4.88960 4.99626 5.04709 5.05370 5.06792 5.13096 5.28392 5.45471 5.51893 5.57891 5.65393 6.01435 6.14326 6.41610 6.75390 6.82485 7.30327 7.46745 8.88505 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.002568 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.293162 B =10900.707349 C =11404.762741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.267 1.267 12 N -0.596 5.596 13 C 0.079 3.921 14 C 0.516 3.484 15 O -0.610 6.610 16 C -0.171 4.171 17 H 0.158 0.842 18 C -0.112 4.112 19 C -0.101 4.101 20 H 0.099 0.901 21 C -0.045 4.045 22 C -0.051 4.051 23 C -0.093 4.093 24 C -0.058 4.058 25 C -0.061 4.061 26 N 0.030 4.970 27 O -0.152 6.152 28 O -0.217 6.217 29 C -0.066 4.066 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.170 0.830 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 -14.436 20.219 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.192 1.192 12 N -0.325 5.325 13 C -0.063 4.063 14 C 0.305 3.695 15 O -0.493 6.493 16 C -0.192 4.192 17 H 0.175 0.825 18 C -0.149 4.149 19 C -0.120 4.120 20 H 0.117 0.883 21 C -0.046 4.046 22 C -0.068 4.068 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.144 4.144 26 N 0.544 4.456 27 O -0.374 6.374 28 O -0.420 6.420 29 C -0.086 4.086 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.177 0.823 39 H 0.201 0.799 40 H 0.213 0.787 41 H 0.187 0.813 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.952 -14.181 19.453 25.352 hybrid contribution -0.390 1.280 -1.014 1.679 sum 7.562 -12.900 18.439 23.740 Atomic orbital electron populations 1.21876 0.97365 1.00135 0.99731 1.18517 0.91470 0.92148 0.81986 0.97757 1.21579 1.31882 1.13096 0.90931 0.91653 1.25791 0.95087 0.95622 1.02226 1.70036 1.37417 1.24019 1.24441 0.85421 0.78969 0.78181 0.78245 1.19212 1.21426 1.19181 1.48160 1.48670 1.13577 1.22128 1.21890 1.01369 0.80313 1.02740 1.20496 0.78220 0.86174 0.84613 1.90631 1.60548 1.19797 1.78297 1.22406 0.97617 1.03960 0.95206 0.82499 1.23353 0.90545 1.00406 1.00625 1.20899 1.04526 0.98787 0.87771 0.88277 1.19010 0.99335 0.93759 0.92472 1.22037 0.92147 0.95584 0.97082 1.21713 0.97143 1.00563 0.91705 1.21495 0.93774 0.88675 1.03745 1.21269 1.14304 0.89190 0.89654 1.44045 0.97332 1.02400 1.01855 1.94466 1.54844 1.88042 1.00079 1.94582 1.56102 1.09244 1.82117 1.20866 0.95642 1.01719 0.90328 0.91496 0.93270 0.96537 0.92685 0.91961 0.91322 0.88281 0.88982 0.82282 0.79938 0.78748 0.81271 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.26 13.53 2.64 44.25 0.12 13.65 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.26 16 4 C -0.54 -28.62 7.99 25.60 0.20 -28.42 16 5 H 0.07 3.32 7.33 -2.91 -0.02 3.30 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 8 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 N -0.60 -24.26 2.75 -826.77 -2.28 -26.54 16 13 C 0.08 2.24 9.00 127.77 1.15 3.39 16 14 C 0.52 20.37 7.46 87.66 0.65 21.02 16 15 O -0.61 -30.82 15.59 -3.05 -0.05 -30.87 16 16 C -0.17 -4.06 4.43 -11.54 -0.05 -4.11 16 17 H 0.16 2.60 7.26 -2.38 -0.02 2.59 16 18 C -0.11 -1.89 9.56 30.61 0.29 -1.60 16 19 C -0.10 -2.19 5.56 -11.52 -0.06 -2.25 16 20 H 0.10 2.86 7.67 -2.39 -0.02 2.84 16 21 C -0.04 -0.73 5.61 -19.87 -0.11 -0.85 16 22 C -0.05 -0.38 9.30 22.27 0.21 -0.17 16 23 C -0.09 -0.49 10.05 22.27 0.22 -0.26 16 24 C -0.06 -0.68 9.56 22.27 0.21 -0.46 16 25 C -0.06 -1.24 6.85 36.38 0.25 -0.99 16 26 N 0.03 0.80 4.45 -46.46 -0.21 0.59 16 27 O -0.15 -3.94 18.45 18.88 0.35 -3.59 16 28 O -0.22 -6.80 18.45 18.89 0.35 -6.45 16 29 C -0.07 -1.41 9.25 22.27 0.21 -1.20 16 30 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 31 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 2.15 7.02 -2.39 -0.02 2.13 16 36 H 0.10 1.92 6.64 -2.39 -0.02 1.91 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.16 0.95 6.18 -2.39 -0.01 0.93 16 39 H 0.18 0.04 6.02 -2.91 -0.02 0.02 16 40 H 0.20 -0.63 8.06 -2.91 -0.02 -0.66 16 41 H 0.17 1.39 7.61 -2.91 -0.02 1.37 16 42 H 0.13 3.32 7.61 -2.91 -0.02 3.29 16 Total: -1.00 -79.65 358.17 5.87 -73.78 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.05 Total: 8.69 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.38 Total: -6.95 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -2.24 Total: -78.90 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: 0.65 Total: -40.91 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -79.65 5.87 -73.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.228 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds