Wall clock time and date at job start Tue Mar 31 2020 12:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50696 * 109.47113 * 239.99505 * 2 1 3 5 5 H 1.08000 * 120.00525 * 239.99719 * 4 2 1 6 6 C 1.37881 * 119.99725 * 60.00645 * 4 2 1 7 7 N 1.31512 * 120.00260 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47495 * 59.99477 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46690 * 299.99220 * 8 6 4 12 12 N 1.46511 * 109.46964 * 119.99997 * 2 1 3 13 13 C 1.46496 * 119.99846 * 59.99785 * 12 2 1 14 14 C 1.34770 * 119.99717 * 239.99818 * 12 2 1 15 15 O 1.21288 * 120.00091 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99999 * 179.97438 * 14 12 2 17 17 H 1.09002 * 115.54929 * 34.41763 * 16 14 12 18 18 C 1.52999 * 117.51845 * 248.71846 * 16 14 12 19 19 C 1.53005 * 117.49884 * 180.08744 * 16 14 12 20 20 H 1.09005 * 117.49361 * 215.02573 * 19 16 14 21 21 C 1.50698 * 117.49963 * 0.02562 * 19 16 14 22 22 C 1.38254 * 119.99851 * 59.72605 * 21 19 16 23 23 C 1.38216 * 119.99374 * 179.76741 * 22 21 19 24 24 C 1.38256 * 120.00168 * 0.50305 * 23 22 21 25 25 C 1.38208 * 120.00070 * 359.75010 * 24 23 22 26 26 N 1.48014 * 120.00232 * 179.97438 * 25 24 23 27 27 O 1.21794 * 120.00408 * 180.02562 * 26 25 24 28 28 O 1.21810 * 119.99848 * 0.02562 * 26 25 24 29 29 C 1.38213 * 119.99637 * 239.99903 * 21 19 16 30 30 H 1.08999 * 109.47497 * 60.00051 * 1 2 3 31 31 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47318 * 300.00146 * 1 2 3 33 33 H 0.96993 * 120.00150 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.46812 * 269.99868 * 13 12 2 35 35 H 1.08997 * 109.47143 * 29.99893 * 13 12 2 36 36 H 1.09000 * 109.46919 * 150.00086 * 13 12 2 37 37 H 1.09003 * 117.50034 * 0.02562 * 18 16 14 38 38 H 1.08995 * 117.49797 * 145.02631 * 18 16 14 39 39 H 1.08000 * 120.00574 * 0.02562 * 22 21 19 40 40 H 1.08010 * 119.99834 * 180.23220 * 23 22 21 41 41 H 1.08001 * 120.00119 * 179.72348 * 24 23 22 42 42 H 1.07992 * 120.00101 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0080 12 7 2.0183 -0.6907 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0857 1.1257 1.8916 16 6 3.2949 -0.7459 3.3141 17 1 3.5228 -1.8041 3.1862 18 6 2.7302 -0.3031 4.6654 19 6 4.1686 0.0527 4.2837 20 1 4.9714 -0.4802 4.7934 21 6 4.4608 1.4894 3.9352 22 6 3.4223 2.3900 3.7879 23 6 3.6907 3.7088 3.4729 24 6 4.9971 4.1249 3.2949 25 6 6.0350 3.2233 3.4370 26 7 7.4335 3.6686 3.2458 27 8 8.3481 2.8741 3.3705 28 8 7.6698 4.8298 2.9637 29 6 5.7668 1.9053 3.7571 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 0.7374 -2.1443 1.9994 35 1 1.5293 -2.5968 0.4709 36 1 2.4627 -2.5819 1.9865 37 1 1.9952 0.5018 4.6644 38 1 2.5865 -1.0700 5.4265 39 1 2.4015 2.0641 3.9231 40 1 2.8796 4.4133 3.3616 41 1 5.2066 5.1543 3.0444 42 1 6.5777 1.2007 3.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931941588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:45 Heat of formation + Delta-G solvation = 26.381234 kcal Electronic energy + Delta-G solvation = -26870.058307 eV Core-core repulsion = 23013.023558 eV Total energy + Delta-G solvation = -3857.034749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99816 -40.47464 -38.76717 -36.63427 -36.38100 -35.25435 -32.95902 -31.69917 -31.13931 -29.56519 -26.45690 -26.20614 -25.34224 -24.53199 -23.80506 -22.63037 -21.18387 -20.54579 -18.87737 -18.52637 -17.92262 -17.35702 -17.21098 -16.52367 -16.45852 -15.51956 -15.33027 -14.71004 -14.67453 -14.25188 -14.03315 -13.59042 -13.26785 -12.73830 -12.66204 -12.56796 -12.37422 -11.90363 -11.72797 -11.58456 -11.45437 -11.34177 -11.16187 -11.07607 -10.99976 -10.93775 -10.92188 -10.74191 -10.59305 -10.34544 -10.24814 -9.54916 -9.27702 -9.13321 -8.55537 -8.37236 -7.72548 -6.16245 -4.24693 0.07764 1.08142 1.57391 1.63099 2.85466 3.22251 3.28131 3.29671 3.47788 3.69192 3.89889 4.29171 4.32378 4.57513 4.64752 4.74636 4.77943 4.85534 4.99968 5.11848 5.15016 5.16658 5.41179 5.47211 5.60442 5.65122 5.76054 5.80010 5.86679 5.93307 6.12938 6.27066 6.31362 6.39645 6.62666 6.69154 6.70442 6.93657 7.27364 7.40524 7.61209 7.82438 7.89863 8.08887 8.38502 8.71079 8.89587 9.42248 10.88985 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003998 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.872490 B = 7001.403658 C = 8080.329596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.082 3.918 14 C 0.527 3.473 15 O -0.544 6.544 16 C -0.173 4.173 17 H 0.128 0.872 18 C -0.145 4.145 19 C -0.093 4.093 20 H 0.125 0.875 21 C -0.039 4.039 22 C 0.012 3.988 23 C -0.126 4.126 24 C -0.052 4.052 25 C -0.057 4.057 26 N 0.037 4.963 27 O -0.173 6.173 28 O -0.174 6.174 29 C -0.050 4.050 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.009 0.991 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -1.759 16.247 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.061 4.061 14 C 0.313 3.687 15 O -0.424 6.424 16 C -0.194 4.194 17 H 0.146 0.854 18 C -0.183 4.183 19 C -0.112 4.112 20 H 0.143 0.857 21 C -0.040 4.040 22 C -0.006 4.006 23 C -0.145 4.145 24 C -0.071 4.071 25 C -0.140 4.140 26 N 0.553 4.447 27 O -0.387 6.387 28 O -0.388 6.388 29 C -0.070 4.070 30 H 0.112 0.888 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.800 -1.255 16.029 16.097 hybrid contribution 0.627 -0.659 -1.243 1.540 sum 1.427 -1.914 14.786 14.977 Atomic orbital electron populations 1.22080 0.98113 0.99442 1.00743 1.18951 0.90851 0.94460 0.79818 0.91921 1.21253 1.32094 1.13145 0.90296 0.92338 1.24879 0.94827 0.94936 0.98986 1.69851 1.36120 1.22523 1.23998 0.86556 0.79309 0.79589 0.81966 1.20164 1.21074 1.20221 1.48239 1.48072 1.11702 1.23202 1.21642 0.98858 0.83239 1.02406 1.19449 0.79111 0.86641 0.83458 1.90647 1.58807 1.16827 1.76095 1.22549 1.05032 1.00656 0.91207 0.85385 1.23116 0.95565 1.03542 0.96054 1.20990 0.95277 0.92277 1.02625 0.85747 1.18740 0.91577 0.93974 0.99723 1.21242 0.99359 0.91873 0.88153 1.21018 0.95359 0.96641 1.01486 1.20934 0.91369 0.99920 0.94869 1.20854 0.80524 0.96406 1.16252 1.43642 1.03538 1.00351 0.97142 1.94499 1.38324 1.50754 1.55170 1.94504 1.90344 1.03013 1.50909 1.20571 0.97790 0.93001 0.95609 0.88804 0.95134 0.97143 0.92544 0.93719 0.90090 0.92690 0.87905 0.87183 0.84984 0.84070 0.83640 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.97 37.15 0.33 -2.95 16 2 C 0.26 6.24 2.64 -69.08 -0.18 6.06 16 3 H 0.06 1.76 6.90 -51.93 -0.36 1.40 16 4 C -0.53 -13.82 7.99 -34.44 -0.28 -14.10 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.58 -11.31 2.75 -175.27 -0.48 -11.79 16 13 C 0.08 1.25 9.26 59.84 0.55 1.81 16 14 C 0.53 9.48 7.31 -10.99 -0.08 9.40 16 15 O -0.54 -11.32 11.01 5.55 0.06 -11.25 16 16 C -0.17 -2.15 5.29 -91.77 -0.49 -2.63 16 17 H 0.13 1.34 6.44 -51.93 -0.33 1.01 16 18 C -0.15 -1.35 9.58 -26.73 -0.26 -1.60 16 19 C -0.09 -1.01 6.04 -91.77 -0.55 -1.56 16 20 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.04 -0.52 4.38 -104.63 -0.46 -0.98 16 22 C 0.01 0.16 6.16 -39.58 -0.24 -0.08 16 23 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.05 -0.71 9.56 -39.59 -0.38 -1.09 16 25 C -0.06 -0.87 6.85 -79.95 -0.55 -1.42 16 26 N 0.04 0.62 4.45 33.96 0.15 0.77 16 27 O -0.17 -2.95 18.45 -29.46 -0.54 -3.49 16 28 O -0.17 -2.95 18.45 -29.46 -0.54 -3.50 16 29 C -0.05 -0.71 9.25 -39.58 -0.37 -1.08 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 36 H 0.05 0.66 6.00 -51.93 -0.31 0.35 16 37 H 0.10 0.99 6.18 -51.93 -0.32 0.67 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 1.65 5.77 -52.49 -0.30 1.35 16 40 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.15 1.76 7.61 -52.49 -0.40 1.37 16 42 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -31.16 349.44 -9.05 -40.22 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.14 Total: 2.54 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.43 Total: -10.59 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.30 Total: -34.90 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.03 Total: -18.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.16 -9.05 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.597 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds