Wall clock time and date at job start Tue Mar 31 2020 12:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47247 * 2 1 4 4 C 1.50696 * 109.47113 * 239.99505 * 2 1 3 5 5 H 1.08000 * 120.00525 * 239.99719 * 4 2 1 6 6 C 1.37881 * 119.99725 * 60.00645 * 4 2 1 7 7 N 1.31512 * 120.00260 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47495 * 59.99477 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46690 * 299.99220 * 8 6 4 12 12 N 1.46511 * 109.46964 * 119.99997 * 2 1 3 13 13 C 1.46496 * 119.99846 * 59.99785 * 12 2 1 14 14 C 1.34770 * 119.99717 * 239.99818 * 12 2 1 15 15 O 1.21288 * 120.00091 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99999 * 179.97438 * 14 12 2 17 17 H 1.09002 * 115.54929 * 34.41763 * 16 14 12 18 18 C 1.52999 * 117.51845 * 248.71846 * 16 14 12 19 19 C 1.53005 * 117.49884 * 180.08744 * 16 14 12 20 20 H 1.09005 * 117.49361 * 215.02573 * 19 16 14 21 21 C 1.50698 * 117.49963 * 0.02562 * 19 16 14 22 22 C 1.38254 * 119.99851 * 59.72605 * 21 19 16 23 23 C 1.38216 * 119.99374 * 179.76741 * 22 21 19 24 24 C 1.38256 * 120.00168 * 0.50305 * 23 22 21 25 25 C 1.38208 * 120.00070 * 359.75010 * 24 23 22 26 26 N 1.48014 * 120.00232 * 179.97438 * 25 24 23 27 27 O 1.21794 * 120.00408 * 180.02562 * 26 25 24 28 28 O 1.21810 * 119.99848 * 0.02562 * 26 25 24 29 29 C 1.38213 * 119.99637 * 239.99903 * 21 19 16 30 30 H 1.08999 * 109.47497 * 60.00051 * 1 2 3 31 31 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47318 * 300.00146 * 1 2 3 33 33 H 0.96993 * 120.00150 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.46812 * 269.99868 * 13 12 2 35 35 H 1.08997 * 109.47143 * 29.99893 * 13 12 2 36 36 H 1.09000 * 109.46919 * 150.00086 * 13 12 2 37 37 H 1.09003 * 117.50034 * 0.02562 * 18 16 14 38 38 H 1.08995 * 117.49797 * 145.02631 * 18 16 14 39 39 H 1.08000 * 120.00574 * 0.02562 * 22 21 19 40 40 H 1.08010 * 119.99834 * 180.23220 * 23 22 21 41 41 H 1.08001 * 120.00119 * 179.72348 * 24 23 22 42 42 H 1.07992 * 120.00101 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0080 12 7 2.0183 -0.6907 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0857 1.1257 1.8916 16 6 3.2949 -0.7459 3.3141 17 1 3.5228 -1.8041 3.1862 18 6 2.7302 -0.3031 4.6654 19 6 4.1686 0.0527 4.2837 20 1 4.9714 -0.4802 4.7934 21 6 4.4608 1.4894 3.9352 22 6 3.4223 2.3900 3.7879 23 6 3.6907 3.7088 3.4729 24 6 4.9971 4.1249 3.2949 25 6 6.0350 3.2233 3.4370 26 7 7.4335 3.6686 3.2458 27 8 8.3481 2.8741 3.3705 28 8 7.6698 4.8298 2.9637 29 6 5.7668 1.9053 3.7571 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 0.7374 -2.1443 1.9994 35 1 1.5293 -2.5968 0.4709 36 1 2.4627 -2.5819 1.9865 37 1 1.9952 0.5018 4.6644 38 1 2.5865 -1.0700 5.4265 39 1 2.4015 2.0641 3.9231 40 1 2.8796 4.4133 3.3616 41 1 5.2066 5.1543 3.0444 42 1 6.5777 1.2007 3.8674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:44 Heat of formation + Delta-G solvation = 10.271843 kcal Electronic energy + Delta-G solvation = -26870.756863 eV Core-core repulsion = 23013.023558 eV Total energy + Delta-G solvation = -3857.733305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.25938 -41.60031 -40.00910 -37.81682 -37.67447 -36.70495 -34.79055 -32.80392 -32.23911 -31.29181 -27.67612 -27.47277 -27.32317 -25.74752 -24.77129 -23.72338 -22.46998 -21.87784 -20.11026 -19.80793 -19.16186 -18.63729 -18.52196 -18.26358 -17.61881 -17.05234 -16.45787 -16.21275 -16.00066 -15.43001 -15.14420 -14.89064 -14.46319 -14.29986 -13.90643 -13.82370 -13.53804 -13.38226 -13.07904 -12.91906 -12.80252 -12.76374 -12.72084 -12.62211 -12.33594 -12.28908 -12.24664 -12.19487 -12.16728 -11.81361 -11.44569 -11.20560 -10.75332 -10.54035 -10.22052 -9.56263 -9.26030 -8.17541 -6.33316 -1.14284 0.05230 0.38435 0.44661 1.37877 1.40176 1.46832 1.67789 2.29819 2.38312 2.48658 2.98714 3.10838 3.31696 3.56723 3.73186 3.74864 3.82758 3.91433 4.01422 4.12800 4.16067 4.39532 4.57034 4.69889 4.72649 4.77254 4.81090 4.85527 4.88762 4.90287 5.01895 5.07307 5.09457 5.14280 5.20114 5.37188 5.46987 5.60844 5.61899 5.66591 6.03892 6.16058 6.51730 6.75100 6.88719 7.31936 7.51549 8.85812 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003998 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.872490 B = 7001.403658 C = 8080.329596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.011 0.989 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.957 3.043 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.514 3.486 15 O -0.582 6.582 16 C -0.184 4.184 17 H 0.155 0.845 18 C -0.116 4.116 19 C -0.095 4.095 20 H 0.156 0.844 21 C -0.044 4.044 22 C 0.006 3.994 23 C -0.132 4.132 24 C -0.060 4.060 25 C -0.077 4.077 26 N 0.037 4.963 27 O -0.184 6.184 28 O -0.191 6.191 29 C -0.059 4.059 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 -4.256 18.082 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.783 3.217 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.304 3.696 15 O -0.465 6.465 16 C -0.205 4.205 17 H 0.173 0.827 18 C -0.153 4.153 19 C -0.114 4.114 20 H 0.174 0.826 21 C -0.045 4.045 22 C -0.013 4.013 23 C -0.150 4.150 24 C -0.079 4.079 25 C -0.161 4.161 26 N 0.550 4.450 27 O -0.397 6.397 28 O -0.402 6.402 29 C -0.078 4.078 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.383 -3.771 17.890 18.288 hybrid contribution 0.710 0.147 -1.778 1.921 sum 1.093 -3.624 16.112 16.551 Atomic orbital electron populations 1.21843 0.97230 0.99912 0.99876 1.18444 0.91431 0.92178 0.81601 0.97093 1.21574 1.31757 1.13028 0.91401 0.92395 1.25661 0.95120 0.95623 1.01839 1.69993 1.37263 1.23814 1.24378 0.85624 0.78254 0.79226 0.78614 1.18562 1.20983 1.20695 1.48197 1.48754 1.13331 1.22196 1.21845 1.01377 0.80751 1.02232 1.20454 0.78015 0.86498 0.84637 1.90630 1.59798 1.18817 1.77250 1.22473 1.07056 1.01348 0.89594 0.82727 1.23329 0.93975 1.03727 0.94238 1.21230 0.97403 0.90547 1.02188 0.82605 1.19090 0.90968 0.95588 0.98852 1.21508 0.99968 0.92142 0.87653 1.21342 0.95554 0.97278 1.00838 1.21156 0.91492 1.00396 0.94902 1.21124 0.79672 0.97466 1.17801 1.43889 1.04185 1.00171 0.96767 1.94471 1.39036 1.50705 1.55512 1.94484 1.90696 1.03376 1.51663 1.20818 0.98715 0.92708 0.95604 0.91777 0.93791 0.95833 0.92727 0.91533 0.92060 0.88962 0.88462 0.83056 0.84215 0.82046 0.82691 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.97 71.98 0.65 -5.28 16 2 C 0.27 13.01 2.64 44.24 0.12 13.12 16 3 H 0.01 0.65 6.90 -2.39 -0.02 0.64 16 4 C -0.54 -28.46 7.99 25.60 0.20 -28.26 16 5 H 0.06 2.98 7.33 -2.91 -0.02 2.96 16 6 C 0.02 0.94 5.30 84.66 0.45 1.38 16 7 N -0.92 -51.91 11.32 21.45 0.24 -51.67 16 8 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 N -0.60 -22.47 2.75 -826.82 -2.28 -24.75 16 13 C 0.08 2.21 9.26 127.77 1.18 3.40 16 14 C 0.51 17.80 7.31 87.66 0.64 18.45 16 15 O -0.58 -24.36 11.01 -3.06 -0.03 -24.40 16 16 C -0.18 -3.86 5.29 -11.54 -0.06 -3.92 16 17 H 0.16 2.41 6.44 -2.39 -0.02 2.40 16 18 C -0.12 -1.59 9.58 30.60 0.29 -1.29 16 19 C -0.10 -1.70 6.04 -11.54 -0.07 -1.77 16 20 H 0.16 1.82 8.14 -2.38 -0.02 1.80 16 21 C -0.04 -1.10 4.38 -19.87 -0.09 -1.18 16 22 C 0.01 0.14 6.16 22.27 0.14 0.28 16 23 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 24 C -0.06 -1.68 9.56 22.27 0.21 -1.46 16 25 C -0.08 -2.37 6.85 36.37 0.25 -2.12 16 26 N 0.04 1.26 4.45 -46.47 -0.21 1.06 16 27 O -0.18 -6.34 18.45 18.89 0.35 -5.99 16 28 O -0.19 -6.67 18.45 18.87 0.35 -6.32 16 29 C -0.06 -1.62 9.25 22.27 0.21 -1.42 16 30 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 31 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.93 7.02 -2.39 -0.02 1.91 16 36 H 0.09 1.82 6.00 -2.39 -0.01 1.81 16 37 H 0.10 1.50 6.18 -2.39 -0.01 1.48 16 38 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.14 3.32 5.77 -2.91 -0.02 3.30 16 40 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 41 H 0.16 3.85 7.61 -2.91 -0.02 3.83 16 42 H 0.16 3.77 7.61 -2.91 -0.02 3.75 16 Total: -1.00 -71.26 349.44 5.85 -65.41 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.06 Total: 15.15 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.34 Total: -13.22 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.24 Total: -75.36 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: 0.66 Total: -36.71 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.26 5.85 -65.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.679 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds