Wall clock time and date at job start Tue Mar 31 2020 12:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70437 * 2 1 4 4 O 1.43177 * 109.71269 * 239.40966 * 2 1 3 5 5 C 1.36196 * 116.63395 * 194.03481 * 4 2 1 6 6 C 1.38704 * 119.37172 * 197.12194 * 5 4 2 7 7 C 1.38193 * 120.06963 * 180.32281 * 6 5 4 8 8 C 1.38249 * 120.10874 * 0.02562 * 7 6 5 9 9 C 1.38198 * 120.11656 * 359.88802 * 8 7 6 10 10 C 1.38704 * 120.06597 * 0.07224 * 9 8 7 11 11 O 1.36109 * 119.39948 * 180.12007 * 10 9 8 12 12 C 1.43171 * 116.71406 * 197.17987 * 11 10 9 13 13 H 1.08996 * 109.70918 * 194.13577 * 12 11 10 14 14 C 1.50703 * 109.70574 * 73.51335 * 12 11 10 15 15 O 1.21272 * 120.00110 * 350.94164 * 14 12 11 16 16 N 1.34776 * 119.99631 * 170.93737 * 14 12 11 17 17 C 1.46497 * 119.99791 * 185.00775 * 16 14 12 18 18 C 1.53941 * 113.74430 * 251.67555 * 17 16 14 19 19 N 1.47579 * 86.12226 * 222.05111 * 18 17 16 20 20 C 1.36940 * 134.49317 * 204.64614 * 19 18 17 21 21 H 1.08000 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00065 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99782 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00089 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47024 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47089 * 119.99943 * 24 22 20 27 27 H 1.48491 * 109.47221 * 240.00145 * 24 22 20 28 28 C 1.47584 * 91.01261 * 24.64082 * 19 18 17 29 29 H 1.09001 * 109.47032 * 292.80040 * 1 2 3 30 30 H 1.09000 * 109.46657 * 52.80318 * 1 2 3 31 31 H 1.09004 * 109.47025 * 172.80234 * 1 2 3 32 32 H 1.08006 * 119.96513 * 0.30360 * 6 5 4 33 33 H 1.07998 * 119.94799 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.94599 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.96816 * 180.02562 * 9 8 7 36 36 H 0.97005 * 120.00377 * 5.01233 * 16 14 12 37 37 H 1.09000 * 112.94514 * 23.41287 * 17 16 14 38 38 H 1.09000 * 113.76741 * 336.35131 * 18 17 16 39 39 H 1.09000 * 113.77228 * 107.74863 * 18 17 16 40 40 H 0.96998 * 119.99736 * 180.02562 * 23 22 20 41 41 H 1.09008 * 113.76642 * 221.06267 * 28 19 18 42 42 H 1.08995 * 113.77283 * 89.66349 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0129 -0.6859 -1.1603 5 6 3.3308 -1.0298 -1.1619 6 6 3.9456 -1.3624 -2.3599 7 6 5.2804 -1.7201 -2.3772 8 6 6.0062 -1.7479 -1.2010 9 6 5.4002 -1.4159 -0.0041 10 6 4.0611 -1.0553 0.0202 11 8 3.4785 -0.7285 1.2061 12 6 2.0474 -0.7361 1.2438 13 1 1.7006 -0.2268 2.1430 14 6 1.5464 -2.1574 1.2388 15 8 2.3183 -3.0717 1.0412 16 7 0.2406 -2.4124 1.4540 17 6 -0.2279 -3.7965 1.5583 18 6 -1.0521 -4.2651 0.3455 19 7 -1.9485 -4.9043 1.3283 20 6 -2.8223 -5.9578 1.2872 21 1 -3.3766 -6.2345 2.1719 22 6 -2.9957 -6.6702 0.1085 23 7 -2.3198 -6.3333 -0.9695 24 14 -4.1882 -8.1069 0.0522 25 1 -4.8189 -8.2792 1.3857 26 1 -5.2399 -7.8378 -0.9611 27 1 -3.4545 -9.3452 -0.3126 28 6 -1.5247 -3.9521 2.3732 29 1 -0.3633 0.3982 0.9474 30 1 -0.3633 0.6213 -0.8186 31 1 -0.3633 -1.0196 -0.1288 32 1 3.3805 -1.3422 -3.2801 33 1 5.7570 -1.9791 -3.3111 34 1 7.0491 -2.0281 -1.2175 35 1 5.9697 -1.4380 0.9133 36 1 -0.3890 -1.6795 1.5397 37 1 0.5599 -4.4909 1.8504 38 1 -1.5181 -3.4511 -0.2098 39 1 -0.5269 -4.9731 -0.2956 40 1 -2.4412 -6.8309 -1.7932 41 1 -1.3768 -4.4103 3.3512 42 1 -2.1295 -3.0463 2.4136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031377866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:14 Heat of formation + Delta-G solvation = -9.563223 kcal Electronic energy + Delta-G solvation = -27288.981775 eV Core-core repulsion = 23430.388357 eV Total energy + Delta-G solvation = -3858.593418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76085 -39.40958 -37.91116 -37.56658 -36.96937 -34.18318 -32.74042 -31.64871 -30.70604 -29.13681 -28.00957 -27.05090 -24.87488 -23.89915 -23.39022 -22.71024 -21.63908 -20.14051 -19.45567 -18.91949 -17.94292 -17.05631 -16.79608 -16.51622 -15.81198 -15.48242 -15.08796 -14.95337 -14.74184 -14.43814 -14.16227 -13.88437 -13.85355 -13.59127 -13.20410 -12.90368 -12.77807 -12.61239 -12.10382 -11.92598 -11.85303 -11.59689 -11.50361 -11.47651 -11.16205 -10.91824 -10.81739 -10.50148 -10.42591 -10.06158 -9.66389 -9.56637 -8.84624 -8.62011 -8.52460 -8.03292 -6.95900 -5.80161 -3.14870 1.30658 1.32840 2.56204 2.79289 3.11364 3.28913 3.38124 3.42848 3.45618 3.75076 3.95734 4.39776 4.47655 4.55966 4.58304 4.81929 4.87331 4.97979 5.11203 5.15012 5.27904 5.37285 5.39761 5.43752 5.47530 5.53575 5.78845 5.88854 5.94136 6.11737 6.13687 6.17975 6.33126 6.45189 6.48590 6.60179 6.65381 6.82388 7.20116 7.28018 7.36589 7.52495 7.71028 7.93469 8.34893 8.99715 9.66002 10.51614 11.36393 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003397 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.883642 B = 8240.206348 C = 8774.155568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.063 3.937 3 H 0.094 0.906 4 O -0.298 6.298 5 C 0.059 3.941 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.110 4.110 10 C 0.065 3.935 11 O -0.282 6.282 12 C 0.032 3.968 13 H 0.150 0.850 14 C 0.494 3.506 15 O -0.514 6.514 16 N -0.710 5.710 17 C 0.091 3.909 18 C 0.156 3.844 19 N -0.606 5.606 20 C -0.228 4.228 21 H 0.083 0.917 22 C -0.005 4.005 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.113 3.887 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.397 0.603 37 H 0.110 0.890 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.255 0.745 41 H 0.050 0.950 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 17.423 1.800 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 H 0.112 0.888 4 O -0.212 6.212 5 C 0.014 3.986 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.020 3.980 11 O -0.195 6.195 12 C -0.028 4.028 13 H 0.167 0.833 14 C 0.277 3.723 15 O -0.389 6.389 16 N -0.365 5.365 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.332 5.332 20 C -0.355 4.355 21 H 0.100 0.900 22 C -0.202 4.202 23 N -0.563 5.563 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.014 4.014 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.233 0.767 37 H 0.128 0.872 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.284 16.474 1.565 20.609 hybrid contribution -1.236 -0.355 0.041 1.287 sum 11.047 16.119 1.606 19.607 Atomic orbital electron populations 1.22141 0.90623 1.05670 1.03994 1.23051 0.97303 0.95411 0.83647 0.88807 1.86393 1.21756 1.73064 1.40024 1.18900 0.83869 1.02193 0.93597 1.20431 0.94738 1.02383 0.95718 1.20870 0.93239 1.00910 0.98613 1.20864 1.00137 1.01057 0.91678 1.20378 0.92139 1.01080 0.99275 1.18802 0.93687 1.01834 0.83657 1.86362 1.18367 1.84038 1.30743 1.23357 0.81443 0.95914 1.02127 0.83295 1.20643 0.83399 0.90572 0.77697 1.90759 1.55438 1.45715 1.46969 1.46417 1.07565 1.10098 1.72436 1.23985 0.95914 0.80798 1.00702 1.22650 0.88245 0.94411 0.91739 1.45669 1.49073 1.31091 1.07398 1.19022 1.16116 1.03762 0.96591 0.89961 1.24828 1.00128 0.99700 0.95557 1.69843 1.43711 1.41816 1.00954 0.86022 0.80167 0.81955 0.77440 1.20383 1.21668 1.21566 1.22884 0.91228 0.93243 0.94093 0.89521 0.89961 0.89363 0.84901 0.85232 0.85263 0.85029 0.76666 0.87169 0.95394 0.90477 0.93516 0.93169 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.13 37.16 0.30 -1.18 16 2 C 0.06 0.70 3.34 -26.46 -0.09 0.61 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.30 -4.42 9.72 -33.09 -0.32 -4.75 16 5 C 0.06 0.91 6.24 -39.14 -0.24 0.66 16 6 C -0.11 -1.54 9.96 -39.43 -0.39 -1.93 16 7 C -0.12 -1.36 10.04 -39.59 -0.40 -1.76 16 8 C -0.12 -1.35 10.04 -39.59 -0.40 -1.75 16 9 C -0.11 -1.45 9.96 -39.42 -0.39 -1.85 16 10 C 0.06 0.98 5.38 -39.14 -0.21 0.77 16 11 O -0.28 -4.09 9.94 -46.97 -0.47 -4.56 16 12 C 0.03 0.40 3.39 -27.62 -0.09 0.30 16 13 H 0.15 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.49 8.05 6.30 -10.98 -0.07 7.98 16 15 O -0.51 -10.86 15.23 -14.02 -0.21 -11.07 16 16 N -0.71 -10.73 4.26 -55.33 -0.24 -10.97 16 17 C 0.09 1.76 4.40 -70.13 -0.31 1.46 16 18 C 0.16 3.75 7.32 -2.98 -0.02 3.73 16 19 N -0.61 -15.48 3.70 -178.06 -0.66 -16.14 16 20 C -0.23 -6.38 10.70 -15.06 -0.16 -6.54 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.92 -27.59 11.38 55.49 0.63 -26.96 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 C 0.11 2.20 8.69 -2.97 -0.03 2.18 16 29 H 0.09 0.47 7.95 -51.93 -0.41 0.06 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.03 5.90 -51.93 -0.31 0.72 16 32 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.40 4.61 6.25 -40.82 -0.26 4.35 16 37 H 0.11 2.37 7.52 -51.93 -0.39 1.98 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 2.15 7.15 -51.93 -0.37 1.78 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 42 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -36.14 346.49 -9.17 -45.32 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.51 Total: 4.31 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.60 Total: 2.43 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.26 Total: -54.07 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.00 Total: -20.37 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.14 -9.17 -45.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.754 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds