Wall clock time and date at job start Tue Mar 31 2020 12:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70437 * 2 1 4 4 O 1.43177 * 109.71269 * 239.40966 * 2 1 3 5 5 C 1.36196 * 116.63395 * 194.03481 * 4 2 1 6 6 C 1.38704 * 119.37172 * 197.12194 * 5 4 2 7 7 C 1.38193 * 120.06963 * 180.32281 * 6 5 4 8 8 C 1.38249 * 120.10874 * 0.02562 * 7 6 5 9 9 C 1.38198 * 120.11656 * 359.88802 * 8 7 6 10 10 C 1.38704 * 120.06597 * 0.07224 * 9 8 7 11 11 O 1.36109 * 119.39948 * 180.12007 * 10 9 8 12 12 C 1.43171 * 116.71406 * 197.17987 * 11 10 9 13 13 H 1.08996 * 109.70918 * 194.13577 * 12 11 10 14 14 C 1.50703 * 109.70574 * 73.51335 * 12 11 10 15 15 O 1.21272 * 120.00110 * 350.94164 * 14 12 11 16 16 N 1.34776 * 119.99631 * 170.93737 * 14 12 11 17 17 C 1.46497 * 119.99791 * 185.00775 * 16 14 12 18 18 C 1.53941 * 113.74430 * 251.67555 * 17 16 14 19 19 N 1.47579 * 86.12226 * 222.05111 * 18 17 16 20 20 C 1.36940 * 134.49317 * 204.64614 * 19 18 17 21 21 H 1.08000 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00065 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99782 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00089 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47024 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47089 * 119.99943 * 24 22 20 27 27 H 1.48491 * 109.47221 * 240.00145 * 24 22 20 28 28 C 1.47584 * 91.01261 * 24.64082 * 19 18 17 29 29 H 1.09001 * 109.47032 * 292.80040 * 1 2 3 30 30 H 1.09000 * 109.46657 * 52.80318 * 1 2 3 31 31 H 1.09004 * 109.47025 * 172.80234 * 1 2 3 32 32 H 1.08006 * 119.96513 * 0.30360 * 6 5 4 33 33 H 1.07998 * 119.94799 * 179.97438 * 7 6 5 34 34 H 1.08001 * 119.94599 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.96816 * 180.02562 * 9 8 7 36 36 H 0.97005 * 120.00377 * 5.01233 * 16 14 12 37 37 H 1.09000 * 112.94514 * 23.41287 * 17 16 14 38 38 H 1.09000 * 113.76741 * 336.35131 * 18 17 16 39 39 H 1.09000 * 113.77228 * 107.74863 * 18 17 16 40 40 H 0.96998 * 119.99736 * 180.02562 * 23 22 20 41 41 H 1.09008 * 113.76642 * 221.06267 * 28 19 18 42 42 H 1.08995 * 113.77283 * 89.66349 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0129 -0.6859 -1.1603 5 6 3.3308 -1.0298 -1.1619 6 6 3.9456 -1.3624 -2.3599 7 6 5.2804 -1.7201 -2.3772 8 6 6.0062 -1.7479 -1.2010 9 6 5.4002 -1.4159 -0.0041 10 6 4.0611 -1.0553 0.0202 11 8 3.4785 -0.7285 1.2061 12 6 2.0474 -0.7361 1.2438 13 1 1.7006 -0.2268 2.1430 14 6 1.5464 -2.1574 1.2388 15 8 2.3183 -3.0717 1.0412 16 7 0.2406 -2.4124 1.4540 17 6 -0.2279 -3.7965 1.5583 18 6 -1.0521 -4.2651 0.3455 19 7 -1.9485 -4.9043 1.3283 20 6 -2.8223 -5.9578 1.2872 21 1 -3.3766 -6.2345 2.1719 22 6 -2.9957 -6.6702 0.1085 23 7 -2.3198 -6.3333 -0.9695 24 14 -4.1882 -8.1069 0.0522 25 1 -4.8189 -8.2792 1.3857 26 1 -5.2399 -7.8378 -0.9611 27 1 -3.4545 -9.3452 -0.3126 28 6 -1.5247 -3.9521 2.3732 29 1 -0.3633 0.3982 0.9474 30 1 -0.3633 0.6213 -0.8186 31 1 -0.3633 -1.0196 -0.1288 32 1 3.3805 -1.3422 -3.2801 33 1 5.7570 -1.9791 -3.3111 34 1 7.0491 -2.0281 -1.2175 35 1 5.9697 -1.4380 0.9133 36 1 -0.3890 -1.6795 1.5397 37 1 0.5599 -4.4909 1.8504 38 1 -1.5181 -3.4511 -0.2098 39 1 -0.5269 -4.9731 -0.2956 40 1 -2.4412 -6.8309 -1.7932 41 1 -1.3768 -4.4103 3.3512 42 1 -2.1295 -3.0463 2.4136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031377866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:13 Heat of formation + Delta-G solvation = -34.369784 kcal Electronic energy + Delta-G solvation = -27290.057468 eV Core-core repulsion = 23430.388357 eV Total energy + Delta-G solvation = -3859.669111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.78928 -40.79328 -39.33862 -38.60541 -38.15832 -35.55887 -34.28915 -33.19893 -31.67677 -30.08939 -29.61927 -28.37365 -26.65923 -25.31495 -24.60363 -23.69323 -22.97636 -21.55667 -20.85751 -19.92788 -19.04926 -18.79515 -18.07422 -17.67766 -17.08398 -17.02159 -16.57181 -16.09202 -15.80869 -15.67421 -15.59971 -15.42376 -14.84978 -14.74490 -14.58516 -14.15056 -13.81605 -13.64883 -13.45115 -13.34615 -13.23810 -12.90439 -12.82842 -12.76581 -12.69097 -12.55024 -12.31659 -12.01153 -11.93343 -11.57540 -11.40722 -10.96788 -10.92607 -10.03783 -9.61672 -9.04557 -9.00370 -7.94478 -5.30493 0.31608 0.35238 1.34003 1.44060 1.46038 1.56368 1.76313 2.11158 2.18609 2.46478 2.77471 3.04597 3.21870 3.32952 3.52906 3.58730 3.70762 3.79787 4.02030 4.03697 4.13881 4.26267 4.30119 4.43251 4.45550 4.49817 4.66248 4.70564 4.74750 4.86750 4.90674 5.05676 5.13943 5.19609 5.19855 5.24581 5.44922 5.51376 5.61354 5.70537 5.86010 5.86711 6.33248 6.46772 6.85173 7.11022 7.55665 8.47719 9.22427 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003397 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.883642 B = 8240.206348 C = 8774.155568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.059 3.941 3 H 0.122 0.878 4 O -0.324 6.324 5 C 0.035 3.965 6 C -0.136 4.136 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.039 3.961 11 O -0.291 6.291 12 C 0.036 3.964 13 H 0.200 0.800 14 C 0.490 3.510 15 O -0.570 6.570 16 N -0.692 5.692 17 C 0.118 3.882 18 C 0.155 3.845 19 N -0.638 5.638 20 C -0.234 4.234 21 H 0.093 0.907 22 C -0.069 4.069 23 N -0.956 5.956 24 Si 0.983 3.017 25 H -0.259 1.259 26 H -0.291 1.291 27 H -0.295 1.295 28 C 0.125 3.875 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.418 0.582 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.248 0.752 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 19.265 3.401 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 H 0.140 0.860 4 O -0.239 6.239 5 C -0.010 4.010 6 C -0.155 4.155 7 C -0.134 4.134 8 C -0.135 4.135 9 C -0.144 4.144 10 C -0.005 4.005 11 O -0.205 6.205 12 C -0.024 4.024 13 H 0.217 0.783 14 C 0.276 3.724 15 O -0.448 6.448 16 N -0.348 5.348 17 C 0.011 3.989 18 C 0.028 3.972 19 N -0.365 5.365 20 C -0.363 4.363 21 H 0.111 0.889 22 C -0.262 4.262 23 N -0.605 5.605 24 Si 0.811 3.189 25 H -0.183 1.183 26 H -0.218 1.218 27 H -0.222 1.222 28 C 0.000 4.000 29 H 0.148 0.852 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.259 0.741 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.061 18.387 3.216 22.224 hybrid contribution -1.107 -0.878 -0.459 1.485 sum 10.954 17.509 2.758 20.837 Atomic orbital electron populations 1.22236 0.88994 1.04128 1.06848 1.23452 0.98499 0.96059 0.81777 0.86021 1.86352 1.21828 1.73750 1.42014 1.19211 0.84243 1.03228 0.94333 1.20777 0.95965 1.03033 0.95722 1.21293 0.92523 0.99482 1.00122 1.21304 1.01653 0.99644 0.90893 1.20769 0.91922 1.01041 1.00654 1.19112 0.94542 1.03034 0.83849 1.86337 1.19411 1.83972 1.30732 1.23673 0.80627 0.93033 1.05026 0.78290 1.21496 0.82880 0.92115 0.75930 1.90736 1.56846 1.47936 1.49271 1.46107 1.08025 1.08807 1.71866 1.23209 0.95148 0.82727 0.97788 1.22501 0.88891 0.93317 0.92520 1.45992 1.48981 1.31969 1.09550 1.19488 1.15692 1.04279 0.96793 0.88931 1.25732 1.02317 1.02754 0.95420 1.70063 1.45777 1.43294 1.01383 0.84949 0.77771 0.78176 0.78052 1.18309 1.21795 1.22218 1.23036 0.90491 0.93223 0.93279 0.85150 0.89077 0.92486 0.84460 0.82212 0.81942 0.83815 0.74128 0.89586 0.95509 0.95580 0.94325 0.91542 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.13 71.98 0.59 -1.90 16 2 C 0.06 1.18 3.34 30.77 0.10 1.28 16 3 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 4 O -0.32 -9.70 9.72 -83.62 -0.81 -10.51 16 5 C 0.03 1.07 6.24 22.56 0.14 1.21 16 6 C -0.14 -3.75 9.96 22.37 0.22 -3.52 16 7 C -0.12 -2.57 10.04 22.26 0.22 -2.34 16 8 C -0.12 -2.50 10.04 22.26 0.22 -2.28 16 9 C -0.13 -3.26 9.96 22.37 0.22 -3.03 16 10 C 0.04 1.18 5.38 22.56 0.12 1.31 16 11 O -0.29 -8.17 9.94 -69.09 -0.69 -8.86 16 12 C 0.04 0.82 3.39 30.02 0.10 0.92 16 13 H 0.20 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.49 15.72 6.30 87.66 0.55 16.27 16 15 O -0.57 -24.79 15.23 15.72 0.24 -24.55 16 16 N -0.69 -20.05 4.26 -447.37 -1.91 -21.95 16 17 C 0.12 4.59 4.40 46.75 0.21 4.79 16 18 C 0.15 7.70 7.32 86.48 0.63 8.33 16 19 N -0.64 -32.73 3.70 -717.26 -2.65 -35.38 16 20 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 21 H 0.09 4.87 7.83 -2.91 -0.02 4.84 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 23 N -0.96 -59.88 11.38 21.65 0.25 -59.63 16 24 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 28 C 0.12 4.65 8.69 86.48 0.75 5.40 16 29 H 0.13 0.77 7.95 -2.39 -0.02 0.75 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.25 5.90 -2.39 -0.01 1.23 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.42 8.50 6.25 -92.70 -0.58 7.92 16 37 H 0.09 3.83 7.52 -2.39 -0.02 3.81 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.54 7.15 -2.39 -0.02 1.53 16 40 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -84.43 346.49 2.38 -82.06 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.47 Total: 19.95 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.45 Total: 10.60 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.31 Total: -116.97 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.26 Total: -43.92 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -84.43 2.38 -82.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.686 kcal (2) G-P(sol) polarization free energy of solvation -84.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds