Wall clock time and date at job start Tue Mar 31 2020 12:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.73804 * 2 1 4 4 O 1.43175 * 109.70706 * 239.39799 * 2 1 3 5 5 C 1.36102 * 116.71218 * 194.13048 * 4 2 1 6 6 C 1.38705 * 119.40081 * 197.18479 * 5 4 2 7 7 C 1.38199 * 120.06828 * 180.18036 * 6 5 4 8 8 C 1.38260 * 120.11239 * 359.97438 * 7 6 5 9 9 C 1.38193 * 120.11393 * 359.92929 * 8 7 6 10 10 C 1.38701 * 120.06606 * 0.02921 * 9 8 7 11 11 O 1.36100 * 119.39489 * 180.27900 * 10 9 8 12 12 C 1.43180 * 116.70050 * 197.13072 * 11 10 9 13 13 H 1.09000 * 109.71334 * 73.46375 * 12 11 10 14 14 C 1.50703 * 109.71107 * 194.05477 * 12 11 10 15 15 O 1.21280 * 120.00009 * 8.79527 * 14 12 11 16 16 N 1.34780 * 119.99710 * 188.79106 * 14 12 11 17 17 C 1.46498 * 119.99630 * 184.63648 * 16 14 12 18 18 C 1.53950 * 113.74200 * 253.74137 * 17 16 14 19 19 N 1.47813 * 86.03722 * 222.08749 * 18 17 16 20 20 C 1.36938 * 134.45480 * 204.64612 * 19 18 17 21 21 H 1.07997 * 120.00104 * 179.86566 * 20 19 18 22 22 C 1.38813 * 119.99964 * 359.86308 * 20 19 18 23 23 N 1.31622 * 119.99936 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99908 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47069 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46958 * 119.99915 * 24 22 20 27 27 H 1.48497 * 109.47376 * 240.00150 * 24 22 20 28 28 C 1.47579 * 91.05082 * 24.55001 * 19 18 17 29 29 H 1.08999 * 109.47057 * 186.96666 * 1 2 3 30 30 H 1.09004 * 109.47135 * 306.95954 * 1 2 3 31 31 H 1.08994 * 109.47400 * 66.95841 * 1 2 3 32 32 H 1.07994 * 119.96517 * 0.13834 * 6 5 4 33 33 H 1.07992 * 119.94288 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.93795 * 179.90905 * 8 7 6 35 35 H 1.07999 * 119.96870 * 180.02562 * 9 8 7 36 36 H 0.96996 * 120.00268 * 4.63785 * 16 14 12 37 37 H 1.08996 * 112.94701 * 25.33227 * 17 16 14 38 38 H 1.09001 * 113.76860 * 336.35151 * 18 17 16 39 39 H 1.08997 * 113.77008 * 107.74595 * 18 17 16 40 40 H 0.97002 * 119.99552 * 180.02562 * 23 22 20 41 41 H 1.09008 * 113.76501 * 221.15369 * 28 19 18 42 42 H 1.08996 * 113.87127 * 89.77226 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6862 -1.1602 5 6 3.3290 -1.0325 -1.1626 6 6 3.9436 -1.3643 -2.3610 7 6 5.2784 -1.7216 -2.3789 8 6 6.0051 -1.7488 -1.2030 9 6 5.3994 -1.4174 -0.0059 10 6 4.0603 -1.0571 0.0190 11 8 3.4790 -0.7278 1.2048 12 6 2.0478 -0.7347 1.2435 13 1 1.6849 -1.7625 1.2413 14 6 1.5696 -0.0296 2.4867 15 8 2.3584 0.5726 3.1837 16 7 0.2652 -0.0682 2.8237 17 6 -0.2171 0.7000 3.9741 18 6 -0.5471 -0.1660 5.2034 19 7 -1.7447 0.6870 5.3549 20 6 -2.5507 1.0304 6.4074 21 1 -3.3887 1.6936 6.2519 22 6 -2.2904 0.5261 7.6742 23 7 -1.2688 -0.2818 7.8639 24 14 -3.3894 0.9951 9.1101 25 1 -4.4595 1.9092 8.6364 26 1 -4.0032 -0.2293 9.6842 27 1 -2.5796 1.6776 10.1510 28 6 -1.7216 1.0217 3.9178 29 1 -0.3633 -1.0201 0.1246 30 1 -0.3633 0.6179 0.8212 31 1 -0.3634 0.4022 -0.9456 32 1 3.3782 -1.3441 -3.2809 33 1 5.7548 -1.9800 -3.3130 34 1 7.0477 -2.0299 -1.2200 35 1 5.9693 -1.4391 0.9112 36 1 -0.3542 -0.6047 2.3046 37 1 0.4081 1.5635 4.2007 38 1 -0.7749 -1.2040 4.9611 39 1 0.1711 -0.0656 6.0171 40 1 -1.0872 -0.6346 8.7491 41 1 -1.9393 2.0688 3.7070 42 1 -2.2949 0.3345 3.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031377868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:18 Heat of formation + Delta-G solvation = -11.935083 kcal Electronic energy + Delta-G solvation = -26474.459556 eV Core-core repulsion = 22615.763286 eV Total energy + Delta-G solvation = -3858.696270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74047 -39.71688 -38.06475 -37.73265 -37.13688 -34.22344 -32.85637 -31.72042 -30.93537 -29.32695 -28.10545 -27.11112 -24.93249 -24.08382 -23.32816 -22.92424 -21.36670 -20.45619 -19.66397 -19.05791 -18.11188 -17.21659 -16.86064 -16.42751 -15.92054 -15.82862 -15.14118 -15.04973 -14.85107 -14.82263 -14.21202 -14.07291 -13.99493 -13.85158 -13.38636 -12.88842 -12.78313 -12.63263 -12.21131 -12.13412 -11.96034 -11.60591 -11.55370 -11.50921 -11.25225 -10.94905 -10.87125 -10.68476 -10.52789 -10.08494 -9.69846 -9.59454 -8.90097 -8.87781 -8.61606 -8.30888 -6.99610 -5.83299 -3.17982 1.04490 1.05945 2.38558 2.52793 2.76467 3.35808 3.40240 3.43932 3.44351 3.55465 3.88629 4.31794 4.35766 4.41558 4.49394 4.66039 4.74566 4.94910 4.98230 5.04188 5.10473 5.16122 5.27974 5.38054 5.40259 5.46645 5.61237 5.72132 5.87001 5.90171 5.94611 6.07909 6.20983 6.27338 6.37109 6.42618 6.57036 6.66390 7.14801 7.16794 7.24869 7.47229 7.62494 7.89896 8.25230 8.96416 9.62970 10.47545 11.33309 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.002563 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.711082 B =10923.268653 C =11520.335894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.064 3.936 3 H 0.092 0.908 4 O -0.300 6.300 5 C 0.048 3.952 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.054 3.946 11 O -0.278 6.278 12 C 0.037 3.963 13 H 0.108 0.892 14 C 0.523 3.477 15 O -0.508 6.508 16 N -0.710 5.710 17 C 0.091 3.909 18 C 0.154 3.846 19 N -0.606 5.606 20 C -0.227 4.227 21 H 0.083 0.917 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.114 3.886 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.399 0.601 37 H 0.113 0.887 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 -3.370 -22.598 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 H 0.109 0.891 4 O -0.215 6.215 5 C 0.003 3.997 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.134 4.134 9 C -0.130 4.130 10 C 0.009 3.991 11 O -0.191 6.191 12 C -0.024 4.024 13 H 0.125 0.875 14 C 0.305 3.695 15 O -0.382 6.382 16 N -0.364 5.364 17 C -0.013 4.013 18 C 0.027 3.973 19 N -0.333 5.333 20 C -0.354 4.354 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.745 3.255 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.013 4.013 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.235 0.765 37 H 0.131 0.869 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.663 -2.874 -21.681 23.910 hybrid contribution -0.998 -0.268 0.636 1.214 sum 8.664 -3.142 -21.044 22.974 Atomic orbital electron populations 1.22099 0.90194 1.04317 1.05111 1.23002 0.97342 0.95854 0.83097 0.89051 1.86329 1.21542 1.73165 1.40497 1.18970 0.84413 1.02800 0.93530 1.20436 0.94753 1.02577 0.95498 1.20915 0.93176 1.01034 0.98641 1.20928 1.00211 1.00743 0.91531 1.20501 0.91902 1.00935 0.99674 1.19065 0.94044 1.02054 0.83959 1.86426 1.18717 1.84608 1.29352 1.23091 0.81529 1.01829 0.95934 0.87482 1.19518 0.83350 0.81417 0.85180 1.90771 1.53682 1.42017 1.51756 1.46289 1.07717 1.49609 1.32773 1.24061 0.95153 0.96603 0.85466 1.22727 0.89152 0.92435 0.92961 1.45715 1.32191 1.53741 1.01607 1.19018 1.06969 1.24014 0.85449 0.89912 1.24842 0.98557 0.99352 0.97547 1.69838 1.29273 1.35424 1.21809 0.86008 0.79505 0.77607 0.82372 1.20372 1.21674 1.21557 1.22872 0.91700 0.98625 0.88143 0.90720 0.88512 0.89922 0.84828 0.85108 0.85018 0.84547 0.76535 0.86938 0.95225 0.90321 0.93489 0.93036 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.19 37.16 0.30 -0.98 16 2 C 0.06 0.70 3.16 -26.51 -0.08 0.61 16 3 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.30 -3.49 10.07 -32.85 -0.33 -3.82 16 5 C 0.05 0.57 6.49 -39.13 -0.25 0.32 16 6 C -0.11 -1.09 9.96 -39.42 -0.39 -1.48 16 7 C -0.12 -0.96 10.04 -39.59 -0.40 -1.36 16 8 C -0.12 -0.99 10.04 -39.59 -0.40 -1.38 16 9 C -0.11 -1.22 9.96 -39.43 -0.39 -1.61 16 10 C 0.05 0.71 6.49 -39.13 -0.25 0.45 16 11 O -0.28 -4.20 9.63 -46.96 -0.45 -4.65 16 12 C 0.04 0.48 3.01 -27.66 -0.08 0.39 16 13 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 14 C 0.52 8.17 6.96 -10.98 -0.08 8.09 16 15 O -0.51 -10.34 16.20 -14.03 -0.23 -10.57 16 16 N -0.71 -10.07 3.97 -55.33 -0.22 -10.29 16 17 C 0.09 1.68 4.37 -70.13 -0.31 1.37 16 18 C 0.15 3.57 7.33 -2.84 -0.02 3.55 16 19 N -0.61 -15.07 3.70 -177.86 -0.66 -15.73 16 20 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -27.19 11.39 55.49 0.63 -26.55 16 24 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.11 2.11 8.69 -2.97 -0.03 2.09 16 29 H 0.07 0.51 7.97 -51.93 -0.41 0.09 16 30 H 0.10 0.79 6.07 -51.93 -0.32 0.48 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.40 4.37 6.81 -40.82 -0.28 4.09 16 37 H 0.11 2.25 7.57 -51.93 -0.39 1.86 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.04 0.60 8.11 -51.93 -0.42 0.17 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -34.39 349.51 -9.20 -43.58 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.54 Total: 2.48 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.64 Total: 3.39 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.25 Total: -52.57 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.01 Total: -19.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.39 -9.20 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds