Wall clock time and date at job start Tue Mar 31 2020 12:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.73804 * 2 1 4 4 O 1.43175 * 109.70706 * 239.39799 * 2 1 3 5 5 C 1.36102 * 116.71218 * 194.13048 * 4 2 1 6 6 C 1.38705 * 119.40081 * 197.18479 * 5 4 2 7 7 C 1.38199 * 120.06828 * 180.18036 * 6 5 4 8 8 C 1.38260 * 120.11239 * 359.97438 * 7 6 5 9 9 C 1.38193 * 120.11393 * 359.92929 * 8 7 6 10 10 C 1.38701 * 120.06606 * 0.02921 * 9 8 7 11 11 O 1.36100 * 119.39489 * 180.27900 * 10 9 8 12 12 C 1.43180 * 116.70050 * 197.13072 * 11 10 9 13 13 H 1.09000 * 109.71334 * 73.46375 * 12 11 10 14 14 C 1.50703 * 109.71107 * 194.05477 * 12 11 10 15 15 O 1.21280 * 120.00009 * 8.79527 * 14 12 11 16 16 N 1.34780 * 119.99710 * 188.79106 * 14 12 11 17 17 C 1.46498 * 119.99630 * 184.63648 * 16 14 12 18 18 C 1.53950 * 113.74200 * 253.74137 * 17 16 14 19 19 N 1.47813 * 86.03722 * 222.08749 * 18 17 16 20 20 C 1.36938 * 134.45480 * 204.64612 * 19 18 17 21 21 H 1.07997 * 120.00104 * 179.86566 * 20 19 18 22 22 C 1.38813 * 119.99964 * 359.86308 * 20 19 18 23 23 N 1.31622 * 119.99936 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99908 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47069 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46958 * 119.99915 * 24 22 20 27 27 H 1.48497 * 109.47376 * 240.00150 * 24 22 20 28 28 C 1.47579 * 91.05082 * 24.55001 * 19 18 17 29 29 H 1.08999 * 109.47057 * 186.96666 * 1 2 3 30 30 H 1.09004 * 109.47135 * 306.95954 * 1 2 3 31 31 H 1.08994 * 109.47400 * 66.95841 * 1 2 3 32 32 H 1.07994 * 119.96517 * 0.13834 * 6 5 4 33 33 H 1.07992 * 119.94288 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.93795 * 179.90905 * 8 7 6 35 35 H 1.07999 * 119.96870 * 180.02562 * 9 8 7 36 36 H 0.96996 * 120.00268 * 4.63785 * 16 14 12 37 37 H 1.08996 * 112.94701 * 25.33227 * 17 16 14 38 38 H 1.09001 * 113.76860 * 336.35151 * 18 17 16 39 39 H 1.08997 * 113.77008 * 107.74595 * 18 17 16 40 40 H 0.97002 * 119.99552 * 180.02562 * 23 22 20 41 41 H 1.09008 * 113.76501 * 221.15369 * 28 19 18 42 42 H 1.08996 * 113.87127 * 89.77226 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 8 2.0128 -0.6862 -1.1602 5 6 3.3290 -1.0325 -1.1626 6 6 3.9436 -1.3643 -2.3610 7 6 5.2784 -1.7216 -2.3789 8 6 6.0051 -1.7488 -1.2030 9 6 5.3994 -1.4174 -0.0059 10 6 4.0603 -1.0571 0.0190 11 8 3.4790 -0.7278 1.2048 12 6 2.0478 -0.7347 1.2435 13 1 1.6849 -1.7625 1.2413 14 6 1.5696 -0.0296 2.4867 15 8 2.3584 0.5726 3.1837 16 7 0.2652 -0.0682 2.8237 17 6 -0.2171 0.7000 3.9741 18 6 -0.5471 -0.1660 5.2034 19 7 -1.7447 0.6870 5.3549 20 6 -2.5507 1.0304 6.4074 21 1 -3.3887 1.6936 6.2519 22 6 -2.2904 0.5261 7.6742 23 7 -1.2688 -0.2818 7.8639 24 14 -3.3894 0.9951 9.1101 25 1 -4.4595 1.9092 8.6364 26 1 -4.0032 -0.2293 9.6842 27 1 -2.5796 1.6776 10.1510 28 6 -1.7216 1.0217 3.9178 29 1 -0.3633 -1.0201 0.1246 30 1 -0.3633 0.6179 0.8212 31 1 -0.3634 0.4022 -0.9456 32 1 3.3782 -1.3441 -3.2809 33 1 5.7548 -1.9800 -3.3130 34 1 7.0477 -2.0299 -1.2200 35 1 5.9693 -1.4391 0.9112 36 1 -0.3542 -0.6047 2.3046 37 1 0.4081 1.5635 4.2007 38 1 -0.7749 -1.2040 4.9611 39 1 0.1711 -0.0656 6.0171 40 1 -1.0872 -0.6346 8.7491 41 1 -1.9393 2.0688 3.7070 42 1 -2.2949 0.3345 3.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031377868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:17 Heat of formation + Delta-G solvation = -34.549288 kcal Electronic energy + Delta-G solvation = -26475.440181 eV Core-core repulsion = 22615.763286 eV Total energy + Delta-G solvation = -3859.676895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67034 -41.02976 -39.40016 -38.67514 -38.25245 -35.57388 -34.30723 -33.26107 -31.71967 -30.11118 -29.61789 -28.45290 -26.64125 -25.30076 -24.62063 -23.74108 -22.53598 -21.67176 -21.14481 -19.97623 -19.13289 -18.78896 -18.18045 -17.53102 -17.15008 -17.02566 -16.77092 -16.04889 -15.92142 -15.75448 -15.65016 -15.28628 -15.23216 -14.84106 -14.58898 -14.20714 -13.83448 -13.58319 -13.36491 -13.31410 -13.20393 -12.91198 -12.86989 -12.79700 -12.68074 -12.36026 -12.30941 -12.04492 -11.93079 -11.60511 -11.54484 -10.99168 -10.91503 -10.09939 -9.67028 -9.13639 -8.99009 -7.93439 -5.28732 0.28308 0.29145 1.20514 1.37444 1.46220 1.47306 1.57347 1.91418 2.38847 2.51599 2.72772 2.96558 3.21466 3.31209 3.46504 3.51400 3.52563 3.78903 3.84560 4.09433 4.12680 4.27219 4.27891 4.41773 4.46401 4.49000 4.63431 4.74156 4.74739 4.88987 4.90624 5.01270 5.10411 5.18187 5.22101 5.22735 5.47298 5.50825 5.60169 5.69749 5.81641 5.87737 6.29888 6.37590 6.86555 7.01530 7.57193 8.48720 9.23495 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035224 B = 0.002563 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.711082 B =10923.268653 C =11520.335894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 H 0.079 0.921 4 O -0.301 6.301 5 C 0.028 3.972 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.110 4.110 9 C -0.129 4.129 10 C 0.021 3.979 11 O -0.311 6.311 12 C 0.041 3.959 13 H 0.127 0.873 14 C 0.527 3.473 15 O -0.562 6.562 16 N -0.689 5.689 17 C 0.120 3.880 18 C 0.149 3.851 19 N -0.639 5.639 20 C -0.230 4.230 21 H 0.093 0.907 22 C -0.072 4.072 23 N -0.956 5.956 24 Si 0.982 3.018 25 H -0.259 1.259 26 H -0.293 1.293 27 H -0.296 1.296 28 C 0.126 3.874 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.420 0.580 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.248 0.752 41 H 0.071 0.929 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -3.648 -25.869 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 H 0.097 0.903 4 O -0.216 6.216 5 C -0.017 4.017 6 C -0.135 4.135 7 C -0.127 4.127 8 C -0.128 4.128 9 C -0.148 4.148 10 C -0.023 4.023 11 O -0.226 6.226 12 C -0.019 4.019 13 H 0.144 0.856 14 C 0.311 3.689 15 O -0.439 6.439 16 N -0.344 5.344 17 C 0.014 3.986 18 C 0.022 3.978 19 N -0.366 5.366 20 C -0.359 4.359 21 H 0.111 0.889 22 C -0.265 4.265 23 N -0.605 5.605 24 Si 0.810 3.190 25 H -0.183 1.183 26 H -0.220 1.220 27 H -0.223 1.223 28 C 0.001 3.999 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.152 0.848 36 H 0.259 0.741 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.809 -3.159 -25.038 26.730 hybrid contribution -0.618 -0.206 1.510 1.645 sum 8.192 -3.365 -23.528 25.139 Atomic orbital electron populations 1.22138 0.87727 1.05579 1.05918 1.23031 0.99054 0.94757 0.81999 0.90319 1.86321 1.21621 1.73298 1.40374 1.19274 0.84606 1.03813 0.94008 1.20822 0.95611 1.01765 0.95324 1.21389 0.92518 0.98917 0.99857 1.21326 1.01600 0.99173 0.90663 1.20761 0.91489 1.01604 1.00907 1.19407 0.95014 1.04174 0.83711 1.86352 1.19665 1.85466 1.31089 1.23091 0.81271 1.02559 0.94992 0.85559 1.20015 0.82947 0.80397 0.85495 1.90751 1.55097 1.44370 1.53685 1.45937 1.07870 1.49147 1.31461 1.23318 0.95509 0.94891 0.84853 1.22622 0.88303 0.93115 0.93765 1.46041 1.32362 1.54202 1.04013 1.19469 1.06863 1.23083 0.86437 0.88882 1.25731 1.00211 1.00135 1.00400 1.70049 1.31375 1.37346 1.21734 0.84954 0.77987 0.77230 0.78810 1.18323 1.21986 1.22286 1.23039 0.91326 1.00494 0.85046 0.88941 0.88594 0.88409 0.82845 0.81467 0.82020 0.84820 0.74060 0.88775 0.95363 0.95093 0.94352 0.91119 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.19 71.98 0.59 -1.51 16 2 C 0.07 1.43 3.16 30.74 0.10 1.53 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 O -0.30 -6.58 10.07 -82.49 -0.83 -7.41 16 5 C 0.03 0.63 6.49 22.56 0.15 0.78 16 6 C -0.12 -1.94 9.96 22.37 0.22 -1.72 16 7 C -0.11 -1.39 10.04 22.27 0.22 -1.16 16 8 C -0.11 -1.61 10.04 22.26 0.22 -1.38 16 9 C -0.13 -2.80 9.96 22.37 0.22 -2.58 16 10 C 0.02 0.56 6.49 22.56 0.15 0.71 16 11 O -0.31 -9.77 9.63 -68.96 -0.66 -10.44 16 12 C 0.04 1.06 3.01 30.00 0.09 1.15 16 13 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.53 16.66 6.96 87.66 0.61 17.27 16 15 O -0.56 -23.94 16.20 15.70 0.25 -23.69 16 16 N -0.69 -18.92 3.97 -447.36 -1.78 -20.70 16 17 C 0.12 4.39 4.37 46.75 0.20 4.59 16 18 C 0.15 7.13 7.33 86.44 0.63 7.76 16 19 N -0.64 -31.74 3.70 -716.62 -2.65 -34.39 16 20 C -0.23 -12.65 10.70 84.03 0.90 -11.75 16 21 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 23 N -0.96 -58.90 11.39 21.65 0.25 -58.65 16 24 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 C 0.13 4.41 8.69 86.49 0.75 5.16 16 29 H 0.09 0.92 7.97 -2.39 -0.02 0.90 16 30 H 0.10 1.30 6.07 -2.39 -0.01 1.29 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.42 8.16 6.81 -92.71 -0.63 7.53 16 37 H 0.09 3.87 7.57 -2.39 -0.02 3.85 16 38 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 1.76 7.16 -2.39 -0.02 1.74 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 Total: -1.00 -79.25 349.51 2.55 -76.71 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.42 Total: 15.62 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.53 Total: 15.21 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -4.19 Total: -113.74 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.24 Total: -41.53 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -79.25 2.55 -76.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.157 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds