Wall clock time and date at job start Tue Mar 31 2020 12:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.70599 * 2 1 4 4 O 1.43184 * 109.74216 * 120.60022 * 2 1 3 5 5 C 1.36105 * 116.70672 * 165.91152 * 4 2 1 6 6 C 1.38699 * 119.39558 * 162.93461 * 5 4 2 7 7 C 1.38202 * 120.06611 * 179.71614 * 6 5 4 8 8 C 1.38247 * 120.11357 * 359.95618 * 7 6 5 9 9 C 1.38198 * 120.11457 * 0.10169 * 8 7 6 10 10 C 1.38697 * 120.06431 * 359.97438 * 9 8 7 11 11 O 1.36106 * 119.39850 * 179.84127 * 10 9 8 12 12 C 1.43178 * 116.70752 * 162.74209 * 11 10 9 13 13 H 1.08999 * 109.74982 * 165.94592 * 12 11 10 14 14 C 1.50705 * 109.71195 * 286.55177 * 12 11 10 15 15 O 1.21286 * 119.99313 * 9.20348 * 14 12 11 16 16 N 1.34769 * 120.00306 * 189.20703 * 14 12 11 17 17 C 1.46502 * 120.00071 * 184.74283 * 16 14 12 18 18 C 1.53951 * 113.73767 * 251.67163 * 17 16 14 19 19 N 1.47582 * 86.11525 * 222.04709 * 18 17 16 20 20 C 1.36937 * 134.49214 * 204.64654 * 19 18 17 21 21 H 1.08000 * 120.00226 * 173.39242 * 20 19 18 22 22 C 1.38815 * 120.00160 * 353.38678 * 20 19 18 23 23 N 1.31616 * 119.99485 * 5.09277 * 22 20 19 24 24 Si 1.86789 * 120.00140 * 185.08346 * 22 20 19 25 25 H 1.48503 * 109.46928 * 94.98177 * 24 22 20 26 26 H 1.48497 * 109.47288 * 214.97816 * 24 22 20 27 27 H 1.48500 * 109.47470 * 334.97938 * 24 22 20 28 28 C 1.47582 * 91.01600 * 24.64141 * 19 18 17 29 29 H 1.09004 * 109.47670 * 187.72174 * 1 2 3 30 30 H 1.09003 * 109.47565 * 307.71894 * 1 2 3 31 31 H 1.09003 * 109.47256 * 67.72004 * 1 2 3 32 32 H 1.08001 * 119.96742 * 359.68187 * 6 5 4 33 33 H 1.08001 * 119.93980 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.94027 * 180.08202 * 8 7 6 35 35 H 1.07999 * 119.96587 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99915 * 4.73533 * 16 14 12 37 37 H 1.08997 * 112.94526 * 23.40338 * 17 16 14 38 38 H 1.08995 * 113.77187 * 336.34467 * 18 17 16 39 39 H 1.08994 * 113.76654 * 107.74594 * 18 17 16 40 40 H 0.97006 * 119.99941 * 179.97438 * 23 22 20 41 41 H 1.09005 * 113.77029 * 221.05905 * 28 19 18 42 42 H 1.08997 * 113.77052 * 89.65810 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 8 2.0136 -0.6860 1.1600 5 6 3.3302 -1.0311 1.1620 6 6 3.9446 -1.3650 2.3598 7 6 5.2793 -1.7232 2.3771 8 6 6.0053 -1.7505 1.2010 9 6 5.3996 -1.4178 0.0042 10 6 4.0608 -1.0559 -0.0199 11 8 3.4787 -0.7277 -1.2056 12 6 2.0475 -0.7356 -1.2438 13 1 1.7002 -0.2265 -2.1429 14 6 1.5468 -2.1571 -1.2393 15 8 2.3185 -3.0711 -1.0391 16 7 0.2417 -2.4125 -1.4579 17 6 -0.2644 -3.7832 -1.3509 18 6 -0.6298 -4.4164 -2.7057 19 7 -1.8239 -4.9489 -2.0211 20 6 -2.6529 -6.0186 -2.2302 21 1 -3.4180 -6.2584 -1.5068 22 6 -2.5098 -6.7948 -3.3722 23 7 -1.5157 -6.5651 -4.2036 24 14 -3.7279 -8.1652 -3.7287 25 1 -4.7907 -7.6596 -4.6343 26 1 -3.0219 -9.2985 -4.3784 27 1 -4.3398 -8.6270 -2.4568 28 6 -1.7657 -3.8656 -1.0206 29 1 -0.3634 -1.0183 0.1381 30 1 -0.3634 0.6287 0.8129 31 1 -0.3634 0.3896 -0.9510 32 1 3.3796 -1.3446 3.2800 33 1 5.7558 -1.9824 3.3110 34 1 7.0479 -2.0321 1.2175 35 1 5.9691 -1.4396 -0.9131 36 1 -0.3626 -1.6888 -1.6859 37 1 0.3590 -4.4184 -0.7216 38 1 -0.8579 -3.6880 -3.4839 39 1 0.0686 -5.1863 -3.0335 40 1 -1.4155 -7.1077 -5.0015 41 1 -1.9741 -4.1958 -0.0029 42 1 -2.3273 -2.9754 -1.3037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031377869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:22 Heat of formation + Delta-G solvation = -11.155005 kcal Electronic energy + Delta-G solvation = -27132.134057 eV Core-core repulsion = 23273.471614 eV Total energy + Delta-G solvation = -3858.662443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79763 -39.42296 -37.94222 -37.60811 -36.98917 -34.18014 -32.77281 -31.67768 -30.75272 -29.18140 -28.03393 -27.06083 -24.88707 -23.92628 -23.40707 -22.75428 -21.67414 -20.13716 -19.46276 -18.96596 -17.98635 -17.06597 -16.82640 -16.57738 -15.80093 -15.52946 -15.09882 -14.96242 -14.78972 -14.47271 -14.21381 -13.90839 -13.83879 -13.69600 -13.20380 -12.95775 -12.77274 -12.64428 -12.11105 -11.96067 -11.87111 -11.69341 -11.52223 -11.49113 -11.20785 -10.91471 -10.82481 -10.54348 -10.47314 -10.08866 -9.67535 -9.57158 -8.84335 -8.66967 -8.52174 -8.07880 -6.95746 -5.82767 -3.16253 1.25801 1.27526 2.54656 2.75872 3.07161 3.27702 3.37421 3.42483 3.44712 3.70371 3.92637 4.39140 4.45023 4.51086 4.56032 4.80785 4.84696 4.93058 5.10073 5.11611 5.23486 5.32762 5.34612 5.41382 5.42742 5.53251 5.73401 5.82702 5.93799 6.06805 6.12853 6.13375 6.33433 6.40172 6.48802 6.55587 6.64792 6.77962 7.18862 7.25380 7.32503 7.50659 7.70435 7.91736 8.34301 8.98378 9.64611 10.51230 11.34404 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.003081 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.763431 B = 9085.814839 C = 9476.452219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.064 3.936 3 H 0.094 0.906 4 O -0.300 6.300 5 C 0.058 3.942 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.109 4.109 10 C 0.067 3.933 11 O -0.281 6.281 12 C 0.032 3.968 13 H 0.150 0.850 14 C 0.494 3.506 15 O -0.515 6.515 16 N -0.709 5.709 17 C 0.091 3.909 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.228 4.228 21 H 0.083 0.917 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.113 3.887 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.397 0.603 37 H 0.110 0.890 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.255 0.745 41 H 0.050 0.950 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 17.977 10.162 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.007 3.993 3 H 0.112 0.888 4 O -0.215 6.215 5 C 0.013 3.987 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.128 4.128 10 C 0.022 3.978 11 O -0.194 6.194 12 C -0.029 4.029 13 H 0.167 0.833 14 C 0.277 3.723 15 O -0.389 6.389 16 N -0.362 5.362 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.332 5.332 20 C -0.356 4.356 21 H 0.100 0.900 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.014 4.014 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.232 0.768 37 H 0.128 0.872 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.433 17.011 10.113 22.372 hybrid contribution -1.170 -0.334 -0.707 1.407 sum 9.263 16.678 9.406 21.271 Atomic orbital electron populations 1.22103 0.90539 1.05493 1.03947 1.23045 0.97314 0.95393 0.83538 0.88817 1.86326 1.21850 1.73121 1.40218 1.18871 0.83888 1.02378 0.93597 1.20397 0.94759 1.02700 0.95574 1.20864 0.93231 1.01061 0.98594 1.20874 1.00167 1.00937 0.91659 1.20408 0.92194 1.00849 0.99345 1.18823 0.93705 1.01560 0.83717 1.86382 1.18422 1.83895 1.30699 1.23346 0.81392 0.95989 1.02144 0.83283 1.20629 0.83395 0.90502 0.77742 1.90763 1.54886 1.45661 1.47617 1.46317 1.08328 1.11423 1.70174 1.23993 0.94742 0.80891 1.01704 1.22612 0.88576 0.94736 0.91012 1.45639 1.31811 1.25146 1.30596 1.18985 1.10512 1.02230 1.03848 0.89963 1.24861 0.98640 0.99919 0.96749 1.69850 1.30584 1.41769 1.13982 0.86087 0.80379 0.81141 0.78087 1.21549 1.21604 1.20442 1.22880 0.91804 0.92016 0.94730 0.89495 0.90205 0.89507 0.85027 0.85265 0.85227 0.84934 0.76786 0.87191 0.95177 0.90890 0.93476 0.93198 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.18 37.15 0.30 -0.97 16 2 C 0.06 0.66 3.34 -26.48 -0.09 0.57 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 4 O -0.30 -4.09 9.71 -32.86 -0.32 -4.41 16 5 C 0.06 0.82 6.24 -39.14 -0.24 0.58 16 6 C -0.12 -1.43 9.96 -39.42 -0.39 -1.83 16 7 C -0.12 -1.27 10.04 -39.59 -0.40 -1.67 16 8 C -0.12 -1.28 10.04 -39.59 -0.40 -1.68 16 9 C -0.11 -1.42 9.96 -39.43 -0.39 -1.81 16 10 C 0.07 0.98 5.37 -39.14 -0.21 0.77 16 11 O -0.28 -4.08 9.95 -46.98 -0.47 -4.55 16 12 C 0.03 0.39 3.37 -27.62 -0.09 0.30 16 13 H 0.15 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.49 7.99 6.30 -10.99 -0.07 7.92 16 15 O -0.51 -10.80 15.22 -14.02 -0.21 -11.01 16 16 N -0.71 -10.58 3.92 -55.33 -0.22 -10.79 16 17 C 0.09 1.76 4.40 -70.14 -0.31 1.45 16 18 C 0.16 3.75 7.23 -2.97 -0.02 3.72 16 19 N -0.61 -15.43 3.70 -178.08 -0.66 -16.09 16 20 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -27.41 11.51 55.49 0.64 -26.77 16 24 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.11 2.20 8.69 -2.97 -0.03 2.18 16 29 H 0.09 0.85 6.08 -51.93 -0.32 0.54 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.43 7.94 -51.93 -0.41 0.02 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.40 4.51 6.87 -40.82 -0.28 4.23 16 37 H 0.11 2.37 7.52 -51.93 -0.39 1.98 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 2.00 7.36 -51.93 -0.38 1.61 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -35.96 347.17 -9.18 -45.14 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.55 Total: 3.40 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.60 Total: 2.76 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.24 Total: -53.65 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.00 Total: -19.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.96 -9.18 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.982 kcal (2) G-P(sol) polarization free energy of solvation -35.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds