Wall clock time and date at job start Tue Mar 31 2020 12:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.74504 * 2 1 4 4 O 1.43178 * 109.70893 * 120.60536 * 2 1 3 5 5 C 1.36105 * 116.71489 * 165.85463 * 4 2 1 6 6 C 1.38712 * 119.39377 * 162.95280 * 5 4 2 7 7 C 1.38196 * 120.06688 * 180.08107 * 6 5 4 8 8 C 1.38256 * 120.11147 * 359.41228 * 7 6 5 9 9 C 1.38201 * 120.11082 * 0.60672 * 8 7 6 10 10 C 1.38696 * 120.06832 * 359.74294 * 9 8 7 11 11 O 1.36103 * 119.39934 * 179.80655 * 10 9 8 12 12 C 1.43185 * 116.70094 * 162.79920 * 11 10 9 13 13 H 1.08995 * 109.71215 * 286.57247 * 12 11 10 14 14 C 1.50698 * 109.74522 * 165.95855 * 12 11 10 15 15 O 1.21280 * 120.00306 * 348.25802 * 14 12 11 16 16 N 1.34779 * 119.99781 * 168.25813 * 14 12 11 17 17 C 1.46504 * 119.99829 * 184.88675 * 16 14 12 18 18 C 1.53946 * 113.73948 * 251.67318 * 17 16 14 19 19 N 1.47582 * 86.11868 * 222.04805 * 18 17 16 20 20 C 1.36937 * 134.49224 * 204.63956 * 19 18 17 21 21 H 1.07999 * 119.99596 * 180.02562 * 20 19 18 22 22 C 1.38803 * 119.99991 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46917 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47184 * 119.99574 * 24 22 20 27 27 H 1.48498 * 109.47555 * 240.00363 * 24 22 20 28 28 C 1.47586 * 91.01224 * 24.64346 * 19 18 17 29 29 H 1.08994 * 109.46723 * 292.56433 * 1 2 3 30 30 H 1.09000 * 109.46978 * 52.56133 * 1 2 3 31 31 H 1.09003 * 109.46800 * 172.55794 * 1 2 3 32 32 H 1.07995 * 119.96440 * 359.80643 * 6 5 4 33 33 H 1.07995 * 119.94092 * 179.68534 * 7 6 5 34 34 H 1.08000 * 119.94572 * 180.35817 * 8 7 6 35 35 H 1.07999 * 119.96700 * 179.76534 * 9 8 7 36 36 H 0.96994 * 119.99905 * 4.88436 * 16 14 12 37 37 H 1.08997 * 112.94723 * 23.40972 * 17 16 14 38 38 H 1.08996 * 113.77022 * 336.35351 * 18 17 16 39 39 H 1.09007 * 113.77027 * 107.74856 * 18 17 16 40 40 H 0.97008 * 119.99457 * 179.97438 * 23 22 20 41 41 H 1.09001 * 113.76758 * 221.06139 * 28 19 18 42 42 H 1.08997 * 113.86887 * 89.67328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0128 -0.6862 1.1601 5 6 3.3290 -1.0328 1.1625 6 6 3.9428 -1.3675 2.3605 7 6 5.2789 -1.7199 2.3792 8 6 6.0044 -1.7517 1.2027 9 6 5.3990 -1.4190 0.0057 10 6 4.0603 -1.0574 -0.0191 11 8 3.4789 -0.7285 -1.2049 12 6 2.0476 -0.7356 -1.2436 13 1 1.6848 -1.7634 -1.2403 14 6 1.5683 -0.0314 -2.4867 15 8 2.3464 0.6152 -3.1556 16 7 0.2749 -0.1201 -2.8553 17 6 -0.1691 0.4738 -4.1187 18 6 -1.0294 1.7380 -3.9407 19 7 -1.8804 1.1884 -5.0140 20 6 -2.7396 1.7325 -5.9310 21 1 -3.2581 1.0936 -6.6304 22 6 -2.9440 3.1050 -5.9615 23 7 -2.3123 3.8836 -5.1087 24 14 -4.1155 3.8473 -7.2129 25 1 -4.6953 2.7664 -8.0500 26 1 -5.2068 4.5638 -6.5051 27 1 -3.3764 4.8015 -8.0779 28 6 -1.4334 -0.1831 -4.7018 29 1 -0.3632 0.3943 0.9490 30 1 -0.3633 0.6247 -0.8160 31 1 -0.3633 -1.0190 -0.1331 32 1 3.3770 -1.3484 3.2802 33 1 5.7560 -1.9752 3.3138 34 1 7.0470 -2.0331 1.2196 35 1 5.9689 -1.4409 -0.9115 36 1 -0.3618 -0.5773 -2.2840 37 1 0.6388 0.5888 -4.8413 38 1 -1.5269 1.7981 -2.9728 39 1 -0.5171 2.6603 -4.2151 40 1 -2.4550 4.8429 -5.1303 41 1 -1.2437 -0.7947 -5.5839 42 1 -2.0487 -0.6889 -3.9578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031377871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:26 Heat of formation + Delta-G solvation = -12.745237 kcal Electronic energy + Delta-G solvation = -26525.838385 eV Core-core repulsion = 22667.106985 eV Total energy + Delta-G solvation = -3858.731401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72722 -39.71577 -38.06653 -37.72435 -37.14289 -34.18901 -32.86397 -31.73042 -30.93036 -29.31744 -28.09632 -27.10060 -24.93007 -24.07189 -23.32143 -22.92185 -21.36007 -20.42050 -19.72454 -19.02037 -18.09771 -17.21513 -16.86376 -16.41568 -15.90975 -15.82377 -15.10949 -15.03232 -14.85578 -14.80354 -14.21326 -14.07852 -14.01683 -13.80408 -13.37155 -12.87747 -12.79385 -12.60334 -12.22822 -12.10817 -11.91899 -11.59977 -11.55190 -11.52792 -11.23324 -10.94692 -10.85907 -10.68203 -10.52449 -10.09059 -9.69875 -9.60746 -8.89518 -8.88345 -8.62227 -8.29996 -7.00202 -5.84271 -3.18697 1.04986 1.06616 2.35041 2.56041 2.79005 3.35392 3.40148 3.43550 3.45320 3.55991 3.90275 4.33128 4.35969 4.43631 4.50861 4.68128 4.74972 4.96740 4.99501 5.05645 5.11271 5.16522 5.32447 5.39988 5.42933 5.46144 5.63369 5.78451 5.87667 5.90856 5.95622 6.08396 6.21292 6.27816 6.37631 6.43328 6.56236 6.67382 7.13656 7.16744 7.24106 7.46418 7.62293 7.89504 8.24968 8.96075 9.62276 10.46986 11.32391 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.002566 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.008847 B =10907.486043 C =11157.503494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.063 3.937 3 H 0.094 0.906 4 O -0.300 6.300 5 C 0.049 3.951 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.054 3.946 11 O -0.279 6.279 12 C 0.038 3.962 13 H 0.107 0.893 14 C 0.523 3.477 15 O -0.509 6.509 16 N -0.710 5.710 17 C 0.091 3.909 18 C 0.154 3.846 19 N -0.605 5.605 20 C -0.226 4.226 21 H 0.083 0.917 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.113 3.887 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.399 0.601 37 H 0.113 0.887 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 -13.227 16.092 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 H 0.112 0.888 4 O -0.215 6.215 5 C 0.004 3.996 6 C -0.133 4.133 7 C -0.137 4.137 8 C -0.135 4.135 9 C -0.130 4.130 10 C 0.008 3.992 11 O -0.192 6.192 12 C -0.023 4.023 13 H 0.125 0.875 14 C 0.305 3.695 15 O -0.383 6.383 16 N -0.364 5.364 17 C -0.013 4.013 18 C 0.028 3.972 19 N -0.332 5.332 20 C -0.354 4.354 21 H 0.101 0.899 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.745 3.255 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.014 4.014 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.235 0.765 37 H 0.131 0.869 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.039 -12.469 15.350 23.152 hybrid contribution -1.128 0.238 -0.309 1.193 sum 10.911 -12.231 15.041 22.246 Atomic orbital electron populations 1.22087 0.90126 1.04151 1.05402 1.23045 0.97383 0.95989 0.82979 0.88832 1.86334 1.21484 1.73122 1.40563 1.18981 0.84477 1.02619 0.93532 1.20443 0.94744 1.02551 0.95527 1.20915 0.93151 1.01039 0.98624 1.20922 1.00196 1.00832 0.91532 1.20484 0.91880 1.01018 0.99653 1.19052 0.94041 1.02108 0.83964 1.86410 1.18723 1.84689 1.29376 1.23106 0.81501 1.01642 0.96057 0.87546 1.19525 0.83242 0.81471 0.85220 1.90769 1.54405 1.39437 1.53671 1.46297 1.08064 1.58011 1.24063 1.24076 0.96513 0.96742 0.83985 1.22687 0.88493 0.95199 0.90858 1.45659 1.51324 1.00463 1.35737 1.19019 1.17595 0.90536 1.08235 0.89912 1.24831 1.00298 0.95916 0.99234 1.69833 1.44932 1.03773 1.37859 0.86009 0.80053 0.79086 0.80352 1.20374 1.21668 1.21556 1.22890 0.91190 0.90253 0.97116 0.89729 0.88475 0.90789 0.84802 0.85108 0.85041 0.84608 0.76539 0.86878 0.95302 0.90311 0.93503 0.93048 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.16 37.16 0.30 -1.18 16 2 C 0.06 0.73 3.17 -26.49 -0.08 0.65 16 3 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 4 O -0.30 -3.63 10.07 -32.86 -0.33 -3.96 16 5 C 0.05 0.59 6.49 -39.13 -0.25 0.34 16 6 C -0.11 -1.11 9.96 -39.42 -0.39 -1.50 16 7 C -0.12 -0.97 10.04 -39.59 -0.40 -1.36 16 8 C -0.12 -0.99 10.04 -39.59 -0.40 -1.39 16 9 C -0.11 -1.21 9.96 -39.43 -0.39 -1.60 16 10 C 0.05 0.70 6.49 -39.14 -0.25 0.45 16 11 O -0.28 -4.18 9.64 -46.90 -0.45 -4.63 16 12 C 0.04 0.49 3.01 -27.64 -0.08 0.40 16 13 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.52 8.18 6.87 -10.99 -0.08 8.11 16 15 O -0.51 -10.34 16.20 -13.88 -0.22 -10.56 16 16 N -0.71 -10.15 4.30 -55.33 -0.24 -10.39 16 17 C 0.09 1.68 4.40 -70.13 -0.31 1.37 16 18 C 0.15 3.52 7.32 -2.97 -0.02 3.50 16 19 N -0.61 -15.00 3.70 -178.07 -0.66 -15.66 16 20 C -0.23 -6.21 10.70 -15.06 -0.16 -6.37 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 23 N -0.92 -26.94 11.38 55.49 0.63 -26.30 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.11 2.13 8.69 -2.97 -0.03 2.10 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.99 6.18 -51.93 -0.32 0.67 16 31 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.40 4.42 6.56 -40.82 -0.27 4.15 16 37 H 0.11 2.30 7.52 -51.93 -0.39 1.91 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 2.08 7.15 -51.93 -0.37 1.71 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -33.98 349.54 -9.21 -43.19 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.54 Total: 2.98 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.64 Total: 3.26 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.26 Total: -52.36 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.01 Total: -19.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.98 -9.21 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.440 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds