Wall clock time and date at job start Tue Mar 31 2020 12:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.74504 * 2 1 4 4 O 1.43178 * 109.70893 * 120.60536 * 2 1 3 5 5 C 1.36105 * 116.71489 * 165.85463 * 4 2 1 6 6 C 1.38712 * 119.39377 * 162.95280 * 5 4 2 7 7 C 1.38196 * 120.06688 * 180.08107 * 6 5 4 8 8 C 1.38256 * 120.11147 * 359.41228 * 7 6 5 9 9 C 1.38201 * 120.11082 * 0.60672 * 8 7 6 10 10 C 1.38696 * 120.06832 * 359.74294 * 9 8 7 11 11 O 1.36103 * 119.39934 * 179.80655 * 10 9 8 12 12 C 1.43185 * 116.70094 * 162.79920 * 11 10 9 13 13 H 1.08995 * 109.71215 * 286.57247 * 12 11 10 14 14 C 1.50698 * 109.74522 * 165.95855 * 12 11 10 15 15 O 1.21280 * 120.00306 * 348.25802 * 14 12 11 16 16 N 1.34779 * 119.99781 * 168.25813 * 14 12 11 17 17 C 1.46504 * 119.99829 * 184.88675 * 16 14 12 18 18 C 1.53946 * 113.73948 * 251.67318 * 17 16 14 19 19 N 1.47582 * 86.11868 * 222.04805 * 18 17 16 20 20 C 1.36937 * 134.49224 * 204.63956 * 19 18 17 21 21 H 1.07999 * 119.99596 * 180.02562 * 20 19 18 22 22 C 1.38803 * 119.99991 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46917 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47184 * 119.99574 * 24 22 20 27 27 H 1.48498 * 109.47555 * 240.00363 * 24 22 20 28 28 C 1.47586 * 91.01224 * 24.64346 * 19 18 17 29 29 H 1.08994 * 109.46723 * 292.56433 * 1 2 3 30 30 H 1.09000 * 109.46978 * 52.56133 * 1 2 3 31 31 H 1.09003 * 109.46800 * 172.55794 * 1 2 3 32 32 H 1.07995 * 119.96440 * 359.80643 * 6 5 4 33 33 H 1.07995 * 119.94092 * 179.68534 * 7 6 5 34 34 H 1.08000 * 119.94572 * 180.35817 * 8 7 6 35 35 H 1.07999 * 119.96700 * 179.76534 * 9 8 7 36 36 H 0.96994 * 119.99905 * 4.88436 * 16 14 12 37 37 H 1.08997 * 112.94723 * 23.40972 * 17 16 14 38 38 H 1.08996 * 113.77022 * 336.35351 * 18 17 16 39 39 H 1.09007 * 113.77027 * 107.74856 * 18 17 16 40 40 H 0.97008 * 119.99457 * 179.97438 * 23 22 20 41 41 H 1.09001 * 113.76758 * 221.06139 * 28 19 18 42 42 H 1.08997 * 113.86887 * 89.67328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0128 -0.6862 1.1601 5 6 3.3290 -1.0328 1.1625 6 6 3.9428 -1.3675 2.3605 7 6 5.2789 -1.7199 2.3792 8 6 6.0044 -1.7517 1.2027 9 6 5.3990 -1.4190 0.0057 10 6 4.0603 -1.0574 -0.0191 11 8 3.4789 -0.7285 -1.2049 12 6 2.0476 -0.7356 -1.2436 13 1 1.6848 -1.7634 -1.2403 14 6 1.5683 -0.0314 -2.4867 15 8 2.3464 0.6152 -3.1556 16 7 0.2749 -0.1201 -2.8553 17 6 -0.1691 0.4738 -4.1187 18 6 -1.0294 1.7380 -3.9407 19 7 -1.8804 1.1884 -5.0140 20 6 -2.7396 1.7325 -5.9310 21 1 -3.2581 1.0936 -6.6304 22 6 -2.9440 3.1050 -5.9615 23 7 -2.3123 3.8836 -5.1087 24 14 -4.1155 3.8473 -7.2129 25 1 -4.6953 2.7664 -8.0500 26 1 -5.2068 4.5638 -6.5051 27 1 -3.3764 4.8015 -8.0779 28 6 -1.4334 -0.1831 -4.7018 29 1 -0.3632 0.3943 0.9490 30 1 -0.3633 0.6247 -0.8160 31 1 -0.3633 -1.0190 -0.1331 32 1 3.3770 -1.3484 3.2802 33 1 5.7560 -1.9752 3.3138 34 1 7.0470 -2.0331 1.2196 35 1 5.9689 -1.4409 -0.9115 36 1 -0.3618 -0.5773 -2.2840 37 1 0.6388 0.5888 -4.8413 38 1 -1.5269 1.7981 -2.9728 39 1 -0.5171 2.6603 -4.2151 40 1 -2.4550 4.8429 -5.1303 41 1 -1.2437 -0.7947 -5.5839 42 1 -2.0487 -0.6889 -3.9578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031377871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:25 Heat of formation + Delta-G solvation = -34.970631 kcal Electronic energy + Delta-G solvation = -26526.802151 eV Core-core repulsion = 22667.106985 eV Total energy + Delta-G solvation = -3859.695166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.67596 -41.03471 -39.41510 -38.68367 -38.25573 -35.55984 -34.31750 -33.29363 -31.72030 -30.12006 -29.63027 -28.45007 -26.63884 -25.32060 -24.63027 -23.74454 -22.54294 -21.64611 -21.19606 -19.96486 -19.15631 -18.77711 -18.18888 -17.52047 -17.15353 -17.01680 -16.78347 -16.05561 -15.90246 -15.75984 -15.67876 -15.30364 -15.20300 -14.84301 -14.59511 -14.24276 -13.88832 -13.59017 -13.43031 -13.27155 -13.21913 -12.93066 -12.87315 -12.79464 -12.67456 -12.38194 -12.28829 -12.06837 -11.93528 -11.61483 -11.54464 -11.00251 -10.91084 -10.10693 -9.66915 -9.13765 -8.98570 -7.93380 -5.28390 0.28540 0.29063 1.17472 1.38551 1.46663 1.47461 1.57440 1.90060 2.38780 2.51718 2.72812 2.94935 3.21907 3.31024 3.47869 3.49245 3.51894 3.77803 3.81167 4.07591 4.12550 4.26739 4.27403 4.41738 4.46078 4.47620 4.59007 4.69449 4.74077 4.87917 4.88881 5.00700 5.07356 5.17667 5.22029 5.22080 5.47889 5.50931 5.60111 5.69644 5.80858 5.88608 6.29366 6.37089 6.87544 7.00973 7.57260 8.48875 9.23411 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.002566 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.008847 B =10907.486043 C =11157.503494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.067 3.933 3 H 0.073 0.927 4 O -0.301 6.301 5 C 0.026 3.974 6 C -0.118 4.118 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.022 3.978 11 O -0.309 6.309 12 C 0.044 3.956 13 H 0.135 0.865 14 C 0.527 3.473 15 O -0.562 6.562 16 N -0.690 5.690 17 C 0.118 3.882 18 C 0.152 3.848 19 N -0.638 5.638 20 C -0.231 4.231 21 H 0.091 0.909 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.981 3.019 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.295 1.295 28 C 0.123 3.877 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.137 0.863 36 H 0.419 0.581 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.248 0.752 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.669 -15.844 17.855 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.009 3.991 3 H 0.090 0.910 4 O -0.216 6.216 5 C -0.019 4.019 6 C -0.136 4.136 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.145 4.145 10 C -0.022 4.022 11 O -0.224 6.224 12 C -0.016 4.016 13 H 0.152 0.848 14 C 0.311 3.689 15 O -0.439 6.439 16 N -0.345 5.345 17 C 0.012 3.988 18 C 0.026 3.974 19 N -0.365 5.365 20 C -0.360 4.360 21 H 0.109 0.891 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.185 1.185 26 H -0.219 1.219 27 H -0.223 1.223 28 C -0.002 4.002 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.155 0.845 36 H 0.259 0.741 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.981 -15.162 17.150 25.837 hybrid contribution -0.966 0.971 -0.752 1.562 sum 11.015 -14.192 16.398 24.324 Atomic orbital electron populations 1.22092 0.88127 1.05620 1.05530 1.22997 0.98770 0.94741 0.82556 0.90951 1.86323 1.21785 1.73211 1.40281 1.19305 0.84578 1.03848 0.94166 1.20816 0.95670 1.01849 0.95281 1.21386 0.92415 0.98953 0.99929 1.21337 1.01614 0.99127 0.90624 1.20763 0.91345 1.01467 1.00974 1.19395 0.95047 1.04129 0.83645 1.86339 1.19539 1.85535 1.30979 1.23090 0.81289 1.02637 0.94574 0.84755 1.20022 0.82837 0.80474 0.85532 1.90748 1.55819 1.41744 1.55585 1.45938 1.08302 1.57305 1.22938 1.23337 0.95634 0.94730 0.85080 1.22579 0.89098 0.95145 0.90624 1.45974 1.51253 1.03441 1.35865 1.19443 1.17046 0.90941 1.08525 0.89084 1.25697 1.02455 0.96612 1.01489 1.70035 1.46868 1.03445 1.39946 0.84969 0.77776 0.78257 0.78065 1.18505 1.21873 1.22268 1.23048 0.90615 0.88120 0.98422 0.88698 0.89641 0.88170 0.83030 0.81503 0.81896 0.84536 0.74093 0.88945 0.94810 0.94950 0.94301 0.91576 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.16 71.98 0.59 -2.04 16 2 C 0.07 1.53 3.17 30.75 0.10 1.63 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 O -0.30 -6.97 10.07 -82.52 -0.83 -7.80 16 5 C 0.03 0.60 6.49 22.56 0.15 0.75 16 6 C -0.12 -2.02 9.96 22.37 0.22 -1.80 16 7 C -0.11 -1.40 10.04 22.26 0.22 -1.17 16 8 C -0.11 -1.55 10.04 22.27 0.22 -1.33 16 9 C -0.13 -2.66 9.96 22.37 0.22 -2.44 16 10 C 0.02 0.58 6.49 22.56 0.15 0.73 16 11 O -0.31 -9.53 9.64 -69.07 -0.67 -10.20 16 12 C 0.04 1.13 3.01 30.01 0.09 1.22 16 13 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 14 C 0.53 16.67 6.87 87.66 0.60 17.27 16 15 O -0.56 -23.87 16.20 15.56 0.25 -23.62 16 16 N -0.69 -19.13 4.30 -447.36 -1.92 -21.06 16 17 C 0.12 4.36 4.40 46.75 0.21 4.56 16 18 C 0.15 7.15 7.32 86.48 0.63 7.78 16 19 N -0.64 -31.66 3.70 -717.28 -2.65 -34.31 16 20 C -0.23 -12.70 10.70 84.03 0.90 -11.80 16 21 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.95 -58.04 11.38 21.65 0.25 -57.80 16 24 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 28 C 0.12 4.43 8.69 86.48 0.75 5.18 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.64 6.18 -2.39 -0.01 1.63 16 31 H 0.10 1.15 7.94 -2.39 -0.02 1.13 16 32 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.42 8.30 6.56 -92.71 -0.61 7.69 16 37 H 0.09 3.87 7.52 -2.39 -0.02 3.86 16 38 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 1.81 7.15 -2.38 -0.02 1.79 16 40 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 Total: -1.00 -77.79 349.54 2.41 -75.38 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.44 Total: 16.80 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.52 Total: 15.06 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -4.33 Total: -113.16 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.25 Total: -41.62 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.79 2.41 -75.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031377871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.409 kcal (2) G-P(sol) polarization free energy of solvation -77.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds