Wall clock time and date at job start Tue Mar 31 2020 13:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99654 * 2 1 4 4 N 1.34769 * 119.99907 * 180.02562 * 2 1 3 5 5 C 1.47029 * 125.65061 * 359.95462 * 4 2 1 6 6 C 1.54319 * 107.27032 * 178.97737 * 5 4 2 7 7 C 1.55161 * 102.94594 * 337.80940 * 6 5 4 8 8 H 1.08997 * 111.03427 * 277.41146 * 7 6 5 9 9 C 1.52999 * 111.00297 * 153.57572 * 7 6 5 10 10 N 1.46498 * 109.46742 * 181.35199 * 9 7 6 11 11 C 1.46499 * 120.00180 * 274.99701 * 10 9 7 12 12 S 1.65606 * 120.00334 * 94.99853 * 10 9 7 13 13 O 1.42100 * 104.27450 * 333.93096 * 12 10 9 14 14 O 1.42093 * 104.28025 * 206.07012 * 12 10 9 15 15 C 1.81403 * 104.44724 * 89.99754 * 12 10 9 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 10 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47423 * 125.64874 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47153 * 269.99879 * 1 2 3 27 27 H 1.09007 * 109.47458 * 30.00158 * 1 2 3 28 28 H 1.09001 * 109.47221 * 150.00125 * 1 2 3 29 29 H 1.08997 * 109.88012 * 298.39986 * 5 4 2 30 30 H 1.09005 * 109.87726 * 59.40722 * 5 4 2 31 31 H 1.09000 * 110.72269 * 219.44357 * 6 5 4 32 32 H 1.09007 * 110.71990 * 96.17133 * 6 5 4 33 33 H 1.08993 * 109.47261 * 61.35141 * 9 7 6 34 34 H 1.08997 * 109.47121 * 301.34825 * 9 7 6 35 35 H 1.09001 * 109.47081 * 270.00588 * 11 10 9 36 36 H 1.09006 * 109.47175 * 30.00114 * 11 10 9 37 37 H 1.09000 * 109.47139 * 150.00053 * 11 10 9 38 38 H 1.09002 * 109.46959 * 60.00458 * 15 12 10 39 39 H 1.08998 * 109.47334 * 299.99936 * 15 12 10 40 40 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 41 41 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36898 * 85.25148 * 25 4 2 44 44 H 1.09009 * 110.45903 * 322.97666 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7280 -3.5315 -0.0273 7 6 3.9081 -2.7114 -0.6125 8 1 3.8590 -2.6772 -1.7008 9 6 5.2519 -3.2735 -0.1444 10 7 6.3392 -2.4567 -0.6891 11 6 6.8545 -2.7255 -2.0338 12 16 6.9859 -1.2293 0.2153 13 8 5.9361 -0.8521 1.0956 14 8 7.4986 -0.3178 -0.7466 15 6 8.3392 -2.0106 1.1366 16 6 9.0238 -0.9664 2.0208 17 6 10.1484 -1.6153 2.7857 18 1 10.3547 -2.6672 2.6540 19 6 10.9142 -0.8661 3.6537 20 7 10.6634 0.4150 3.8137 21 14 12.3078 -1.6706 4.6023 22 1 11.7927 -2.1871 5.8958 23 1 12.8640 -2.7945 3.8068 24 1 13.3746 -0.6698 4.8584 25 6 3.6479 -1.3123 -0.0001 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 0.9783 -2.6434 0.9019 30 1 0.9459 -2.6291 -0.8822 31 1 2.4824 -4.3714 -0.6772 32 1 2.9606 -3.8771 0.9800 33 1 5.3581 -4.3001 -0.4947 34 1 5.2940 -3.2550 0.9446 35 1 7.6705 -3.4455 -1.9730 36 1 6.0561 -3.1328 -2.6542 37 1 7.2201 -1.7982 -2.4749 38 1 9.0640 -2.4252 0.4358 39 1 7.9398 -2.8095 1.7613 40 1 8.2988 -0.5522 2.7216 41 1 9.4231 -0.1672 1.3964 42 1 11.2019 0.9420 4.4246 43 1 4.0334 -1.2661 1.0185 44 1 4.1076 -0.5379 -0.6143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116374157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:43 Heat of formation + Delta-G solvation = -108.597489 kcal Electronic energy + Delta-G solvation = -25740.156599 eV Core-core repulsion = 22012.712684 eV Total energy + Delta-G solvation = -3727.443915 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09766 -37.99621 -36.64708 -35.97293 -35.39365 -33.88693 -32.35053 -31.16010 -29.95372 -29.37922 -26.80669 -25.60028 -24.83294 -23.01834 -21.53307 -20.60236 -19.40856 -18.50241 -17.72097 -17.10990 -16.59623 -16.31795 -15.99466 -15.45381 -15.35178 -14.71292 -14.55630 -14.50833 -14.08275 -13.75875 -13.37711 -13.29379 -13.03180 -12.78323 -12.67165 -12.54968 -12.32643 -12.08725 -12.05969 -11.79095 -11.74643 -11.59856 -11.46208 -11.23517 -11.08411 -10.96522 -10.87701 -10.70955 -10.40060 -10.37425 -9.87283 -9.75333 -9.34103 -8.82044 -8.61139 -8.50239 -6.11989 -4.17964 0.73395 2.63114 2.94733 3.01054 3.25851 3.32070 3.34755 4.19237 4.27213 4.34188 4.40109 4.52555 4.60956 4.64130 4.85722 4.97109 5.05673 5.16206 5.20557 5.21836 5.22934 5.33841 5.37489 5.45168 5.54000 5.59429 5.61093 5.66014 5.68764 5.78998 5.82959 5.94912 6.12672 6.24835 6.42607 6.48446 6.62916 7.30546 7.36398 7.50264 7.80532 8.16999 8.17611 8.85451 9.46765 10.98967 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003288 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.710730 B = 8514.447202 C = 9010.895841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.519 3.481 3 O -0.541 6.541 4 N -0.622 5.622 5 C 0.102 3.898 6 C -0.125 4.125 7 C -0.123 4.123 8 H 0.085 0.915 9 C 0.137 3.863 10 N -1.011 6.011 11 C 0.085 3.915 12 S 2.582 3.418 13 O -0.955 6.955 14 O -0.962 6.962 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.284 1.284 25 C 0.099 3.901 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.112 0.888 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.887 -12.613 -10.610 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.308 3.692 3 O -0.418 6.418 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.164 4.164 7 C -0.144 4.144 8 H 0.104 0.896 9 C 0.011 3.989 10 N -0.847 5.847 11 C -0.060 4.060 12 S 2.681 3.319 13 O -0.945 6.945 14 O -0.952 6.952 15 C -0.722 4.722 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.198 1.198 24 H -0.210 1.210 25 C -0.023 4.023 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.130 0.870 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.876 -10.910 -10.575 24.231 hybrid contribution 1.082 -1.073 0.600 1.638 sum -17.794 -11.983 -9.975 23.658 Atomic orbital electron populations 1.21879 0.91737 1.04513 1.04602 1.20475 0.90236 0.82277 0.76214 1.90771 1.70699 1.30597 1.49737 1.48654 1.08108 1.05499 1.73510 1.22017 0.96350 0.82254 1.01527 1.22649 0.93929 0.97231 1.02547 1.22857 0.94963 0.95558 1.00988 0.89620 1.21165 0.84076 0.94619 0.99030 1.57709 1.47192 1.53120 1.26669 1.21522 0.99124 1.02548 0.82853 1.05985 0.76541 0.74451 0.74900 1.93517 1.52684 1.80875 1.67434 1.93530 1.81760 1.60137 1.59806 1.30478 1.16182 1.12852 1.12694 1.18962 0.96376 0.91899 0.93862 1.20998 1.14669 0.95870 1.24538 0.92078 1.25080 0.97733 0.94890 0.96809 1.69960 1.40010 1.06188 1.36568 0.86470 0.81573 0.79087 0.80152 1.20451 1.19772 1.20979 1.22867 0.79211 0.95937 1.04318 0.88944 0.89039 0.90450 0.91264 0.91515 0.89778 0.89837 0.89881 0.89500 0.92815 0.91274 0.89863 0.86396 0.86362 0.94789 0.94921 0.92496 0.86994 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.90 36.01 0.36 -1.05 16 2 C 0.52 7.33 7.96 -10.99 -0.09 7.24 16 3 O -0.54 -10.62 17.36 5.56 0.10 -10.53 16 4 N -0.62 -7.84 3.33 -170.50 -0.57 -8.41 16 5 C 0.10 0.77 6.16 -3.06 -0.02 0.75 16 6 C -0.13 -0.84 6.42 -24.90 -0.16 -1.00 16 7 C -0.12 -1.21 3.29 -88.46 -0.29 -1.50 16 8 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 9 C 0.14 1.35 4.97 -4.04 -0.02 1.33 16 10 N -1.01 -12.78 2.99 -121.76 -0.36 -13.14 16 11 C 0.09 0.88 10.66 59.85 0.64 1.52 16 12 S 2.58 46.27 5.28 -107.50 -0.57 45.70 16 13 O -0.95 -18.91 12.96 -57.54 -0.75 -19.66 16 14 O -0.96 -20.37 16.57 -57.54 -0.95 -21.33 16 15 C -0.59 -11.24 6.12 37.16 0.23 -11.01 16 16 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 17 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 21 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.10 1.45 4.69 -2.52 -0.01 1.43 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.44 7.06 -51.93 -0.37 0.07 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.38 7.76 -51.93 -0.40 -0.02 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 33 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.09 0.87 7.56 -51.93 -0.39 0.47 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.08 1.00 6.91 -51.93 -0.36 0.64 16 38 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 39 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 40 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.11 1.89 5.68 -51.93 -0.30 1.60 16 44 H 0.07 1.25 7.93 -51.92 -0.41 0.84 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -38.29 366.95 -9.03 -47.32 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.25 Total: -0.80 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.95 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.19 Total: -47.51 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -1.60 Total: -51.51 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 46.27 SS G_CDS: -0.57 Total: 45.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.29 -9.03 -47.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116374157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.282 kcal (2) G-P(sol) polarization free energy of solvation -38.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds