Wall clock time and date at job start Tue Mar 31 2020 13:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99654 * 2 1 4 4 N 1.34769 * 119.99907 * 180.02562 * 2 1 3 5 5 C 1.47029 * 125.65061 * 359.95462 * 4 2 1 6 6 C 1.54319 * 107.27032 * 178.97737 * 5 4 2 7 7 C 1.55161 * 102.94594 * 337.80940 * 6 5 4 8 8 H 1.08997 * 111.03427 * 277.41146 * 7 6 5 9 9 C 1.52999 * 111.00297 * 153.57572 * 7 6 5 10 10 N 1.46498 * 109.46742 * 181.35199 * 9 7 6 11 11 C 1.46499 * 120.00180 * 274.99701 * 10 9 7 12 12 S 1.65606 * 120.00334 * 94.99853 * 10 9 7 13 13 O 1.42100 * 104.27450 * 333.93096 * 12 10 9 14 14 O 1.42093 * 104.28025 * 206.07012 * 12 10 9 15 15 C 1.81403 * 104.44724 * 89.99754 * 12 10 9 16 16 C 1.53001 * 109.47153 * 180.02562 * 15 12 10 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.47423 * 125.64874 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47153 * 269.99879 * 1 2 3 27 27 H 1.09007 * 109.47458 * 30.00158 * 1 2 3 28 28 H 1.09001 * 109.47221 * 150.00125 * 1 2 3 29 29 H 1.08997 * 109.88012 * 298.39986 * 5 4 2 30 30 H 1.09005 * 109.87726 * 59.40722 * 5 4 2 31 31 H 1.09000 * 110.72269 * 219.44357 * 6 5 4 32 32 H 1.09007 * 110.71990 * 96.17133 * 6 5 4 33 33 H 1.08993 * 109.47261 * 61.35141 * 9 7 6 34 34 H 1.08997 * 109.47121 * 301.34825 * 9 7 6 35 35 H 1.09001 * 109.47081 * 270.00588 * 11 10 9 36 36 H 1.09006 * 109.47175 * 30.00114 * 11 10 9 37 37 H 1.09000 * 109.47139 * 150.00053 * 11 10 9 38 38 H 1.09002 * 109.46959 * 60.00458 * 15 12 10 39 39 H 1.08998 * 109.47334 * 299.99936 * 15 12 10 40 40 H 1.09007 * 109.46922 * 59.99828 * 16 15 12 41 41 H 1.09003 * 109.46836 * 300.00583 * 16 15 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36898 * 85.25148 * 25 4 2 44 44 H 1.09009 * 110.45903 * 322.97666 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7280 -3.5315 -0.0273 7 6 3.9081 -2.7114 -0.6125 8 1 3.8590 -2.6772 -1.7008 9 6 5.2519 -3.2735 -0.1444 10 7 6.3392 -2.4567 -0.6891 11 6 6.8545 -2.7255 -2.0338 12 16 6.9859 -1.2293 0.2153 13 8 5.9361 -0.8521 1.0956 14 8 7.4986 -0.3178 -0.7466 15 6 8.3392 -2.0106 1.1366 16 6 9.0238 -0.9664 2.0208 17 6 10.1484 -1.6153 2.7857 18 1 10.3547 -2.6672 2.6540 19 6 10.9142 -0.8661 3.6537 20 7 10.6634 0.4150 3.8137 21 14 12.3078 -1.6706 4.6023 22 1 11.7927 -2.1871 5.8958 23 1 12.8640 -2.7945 3.8068 24 1 13.3746 -0.6698 4.8584 25 6 3.6479 -1.3123 -0.0001 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 0.9783 -2.6434 0.9019 30 1 0.9459 -2.6291 -0.8822 31 1 2.4824 -4.3714 -0.6772 32 1 2.9606 -3.8771 0.9800 33 1 5.3581 -4.3001 -0.4947 34 1 5.2940 -3.2550 0.9446 35 1 7.6705 -3.4455 -1.9730 36 1 6.0561 -3.1328 -2.6542 37 1 7.2201 -1.7982 -2.4749 38 1 9.0640 -2.4252 0.4358 39 1 7.9398 -2.8095 1.7613 40 1 8.2988 -0.5522 2.7216 41 1 9.4231 -0.1672 1.3964 42 1 11.2019 0.9420 4.4246 43 1 4.0334 -1.2661 1.0185 44 1 4.1076 -0.5379 -0.6143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116374157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:42 Heat of formation + Delta-G solvation = -138.555985 kcal Electronic energy + Delta-G solvation = -25741.455697 eV Core-core repulsion = 22012.712684 eV Total energy + Delta-G solvation = -3728.743013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06167 -39.03012 -38.18488 -37.09166 -36.81848 -35.91687 -33.29208 -33.14131 -30.72596 -30.14180 -27.78884 -27.49074 -25.83584 -23.90771 -23.36225 -21.43299 -20.36346 -19.78070 -19.16570 -18.44574 -18.07638 -17.49078 -17.17846 -16.88794 -16.55282 -16.38294 -15.79253 -15.55002 -15.12453 -14.97918 -14.59325 -14.38442 -14.31414 -13.86686 -13.76054 -13.70056 -13.35891 -13.23402 -13.17278 -13.12260 -12.98889 -12.94071 -12.75747 -12.68516 -12.49307 -12.27309 -12.16455 -12.11591 -11.85649 -11.71606 -11.47551 -11.15455 -10.98248 -10.67386 -9.91860 -9.63067 -8.28005 -6.43267 -0.72020 1.39182 1.41855 1.53048 1.57691 1.76741 2.07143 2.36548 2.87168 3.05038 3.17224 3.40589 3.66862 3.77252 3.89787 3.96700 4.07754 4.14415 4.33823 4.42915 4.48663 4.50784 4.56952 4.61190 4.70987 4.71785 4.73579 4.85193 4.91898 4.99502 5.03137 5.10830 5.16729 5.20429 5.23356 5.24223 5.32281 5.45679 5.65527 5.70437 6.02923 6.56683 6.70943 7.13759 7.27401 8.84429 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.003288 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.710730 B = 8514.447202 C = 9010.895841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.500 3.500 3 O -0.618 6.618 4 N -0.624 5.624 5 C 0.091 3.909 6 C -0.114 4.114 7 C -0.115 4.115 8 H 0.097 0.903 9 C 0.127 3.873 10 N -0.999 5.999 11 C 0.076 3.924 12 S 2.597 3.403 13 O -0.981 6.981 14 O -1.004 7.004 15 C -0.586 4.586 16 C 0.020 3.980 17 C -0.540 4.540 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.977 3.023 22 H -0.269 1.269 23 H -0.255 1.255 24 H -0.284 1.284 25 C 0.090 3.910 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.004 0.996 41 H -0.001 1.001 42 H 0.267 0.733 43 H 0.081 0.919 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.388 -17.601 -11.406 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.292 3.708 3 O -0.500 6.500 4 N -0.357 5.357 5 C -0.030 4.030 6 C -0.152 4.152 7 C -0.136 4.136 8 H 0.115 0.885 9 C 0.002 3.998 10 N -0.838 5.838 11 C -0.068 4.068 12 S 2.695 3.305 13 O -0.971 6.971 14 O -0.994 6.994 15 C -0.718 4.718 16 C -0.018 4.018 17 C -0.578 4.578 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.801 3.199 22 H -0.194 1.194 23 H -0.179 1.179 24 H -0.209 1.209 25 C -0.034 4.034 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -20.394 -15.967 -11.370 28.286 hybrid contribution 1.465 0.456 0.793 1.727 sum -18.929 -15.511 -10.577 26.660 Atomic orbital electron populations 1.21881 0.86843 1.06339 1.06204 1.21680 0.92636 0.81641 0.74846 1.90727 1.72588 1.33377 1.53339 1.48890 1.07495 1.07396 1.71938 1.22463 0.97165 0.79411 1.03991 1.22732 0.91401 0.97415 1.03646 1.22866 0.96519 0.92749 1.01446 0.88477 1.21611 0.82705 0.96308 0.99169 1.57269 1.47386 1.52308 1.26809 1.21813 1.01300 1.02198 0.81532 1.05170 0.75812 0.75001 0.74480 1.93506 1.53041 1.81949 1.68622 1.93469 1.82521 1.62545 1.60836 1.30363 1.17112 1.11598 1.12691 1.18806 0.96086 0.92996 0.93951 1.21529 1.14996 0.96788 1.24518 0.90332 1.26202 1.00889 0.95390 0.98046 1.70126 1.41634 1.08155 1.37696 0.85262 0.77611 0.78302 0.78771 1.19380 1.17870 1.20926 1.22739 0.80725 0.97924 1.02011 0.87210 0.89026 0.86771 0.89246 0.88484 0.85717 0.89191 0.84786 0.89871 0.90305 0.87623 0.92318 0.84316 0.83714 0.97781 0.98249 0.92395 0.90110 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.90 71.24 0.71 -1.60 16 2 C 0.50 14.55 7.96 87.66 0.70 15.25 16 3 O -0.62 -26.44 17.36 -3.04 -0.05 -26.50 16 4 N -0.62 -15.50 3.33 -811.74 -2.70 -18.20 16 5 C 0.09 1.03 6.16 86.73 0.53 1.56 16 6 C -0.11 -0.99 6.42 31.78 0.20 -0.78 16 7 C -0.11 -1.98 3.29 -9.39 -0.03 -2.01 16 8 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 9 C 0.13 2.10 4.97 86.38 0.43 2.53 16 10 N -1.00 -23.88 2.99 -539.14 -1.61 -25.49 16 11 C 0.08 1.39 10.66 127.77 1.36 2.75 16 12 S 2.60 97.45 5.28 -56.49 -0.30 97.15 16 13 O -0.98 -41.88 12.96 -127.65 -1.65 -43.54 16 14 O -1.00 -45.47 16.57 -127.65 -2.12 -47.58 16 15 C -0.59 -22.62 6.12 71.98 0.44 -22.18 16 16 C 0.02 1.11 4.98 29.85 0.15 1.26 16 17 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 18 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 19 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 20 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 21 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 C 0.09 2.73 4.69 86.86 0.41 3.14 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.11 0.84 7.06 -2.39 -0.02 0.83 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.58 7.76 -2.38 -0.02 0.56 16 31 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.09 0.71 8.04 -2.38 -0.02 0.69 16 33 H 0.13 0.99 8.11 -2.39 -0.02 0.97 16 34 H 0.08 1.48 7.56 -2.39 -0.02 1.46 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 1.20 8.07 -2.38 -0.02 1.18 16 37 H 0.06 1.39 6.91 -2.39 -0.02 1.38 16 38 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 39 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 40 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.08 2.94 5.68 -2.39 -0.01 2.93 16 44 H 0.02 0.84 7.93 -2.38 -0.02 0.83 16 Total: -1.00 -94.65 366.95 0.45 -94.21 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.97 Total: 12.73 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.59 Total: -30.23 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.02 Total: -101.97 kcal Atomic # 8 Polarization: -113.80 SS G_CDS: -3.82 Total: -117.62 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 97.45 SS G_CDS: -0.30 Total: 97.15 kcal Total: -94.65 0.45 -94.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116374157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.348 kcal (2) G-P(sol) polarization free energy of solvation -94.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds