Wall clock time and date at job start Tue Mar 31 2020 13:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 120.00006 * 2 1 4 4 N 1.34776 * 119.99800 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.65169 * 0.02562 * 4 2 1 6 6 C 1.54316 * 107.27171 * 181.01715 * 5 4 2 7 7 C 1.55157 * 102.94716 * 22.19094 * 6 5 4 8 8 H 1.09001 * 111.00400 * 82.60577 * 7 6 5 9 9 C 1.52991 * 111.00714 * 206.42615 * 7 6 5 10 10 N 1.46502 * 109.47137 * 185.00027 * 9 7 6 11 11 C 1.46499 * 120.00062 * 85.00126 * 10 9 7 12 12 S 1.65606 * 119.99935 * 264.99629 * 10 9 7 13 13 O 1.42104 * 104.27561 * 26.07637 * 12 10 9 14 14 O 1.42095 * 104.27253 * 153.92818 * 12 10 9 15 15 C 1.81392 * 104.45119 * 270.00294 * 12 10 9 16 16 C 1.53003 * 109.46872 * 180.02562 * 15 12 10 17 17 C 1.50706 * 109.46666 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99469 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47028 * 90.00181 * 21 19 17 23 23 H 1.48500 * 109.47296 * 209.99930 * 21 19 17 24 24 H 1.48496 * 109.47259 * 330.00180 * 21 19 17 25 25 C 1.47424 * 125.64773 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.46954 * 239.99767 * 1 2 3 27 27 H 1.08995 * 109.47042 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46834 * 120.00179 * 1 2 3 29 29 H 1.08999 * 109.87782 * 61.59444 * 5 4 2 30 30 H 1.09002 * 109.87896 * 300.43223 * 5 4 2 31 31 H 1.09008 * 110.71914 * 263.82979 * 6 5 4 32 32 H 1.08997 * 110.87372 * 140.62731 * 6 5 4 33 33 H 1.08999 * 109.47459 * 64.99930 * 9 7 6 34 34 H 1.09005 * 109.47209 * 304.99882 * 9 7 6 35 35 H 1.09002 * 109.47391 * 89.99876 * 11 10 9 36 36 H 1.09001 * 109.46813 * 329.99933 * 11 10 9 37 37 H 1.09004 * 109.47041 * 210.00060 * 11 10 9 38 38 H 1.08998 * 109.47145 * 299.99771 * 15 12 10 39 39 H 1.09000 * 109.47466 * 59.99926 * 15 12 10 40 40 H 1.09004 * 109.46728 * 299.99300 * 16 15 12 41 41 H 1.08997 * 109.47347 * 60.00139 * 16 15 12 42 42 H 0.96997 * 120.00119 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36796 * 37.07681 * 25 4 2 44 44 H 1.09000 * 110.36643 * 274.75565 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5067 -0.0017 6 6 2.7280 -3.5316 0.0243 7 6 3.9083 -2.7120 0.6096 8 1 3.8594 -2.6792 1.6980 9 6 5.2519 -3.2737 0.1406 10 7 6.3410 -2.5532 0.8047 11 6 6.7906 -2.9699 2.1353 12 16 7.0639 -1.2678 0.0513 13 8 6.0645 -0.7692 -0.8273 14 8 7.5646 -0.4731 1.1175 15 6 8.4290 -2.0038 -0.8896 16 6 9.1837 -0.9035 -1.6385 17 6 10.3181 -1.5150 -2.4197 18 1 10.4845 -2.5816 -2.3851 19 6 11.1437 -0.7127 -3.1786 20 7 10.9414 0.5861 -3.2203 21 14 12.5503 -1.4705 -4.1463 22 1 12.0748 -1.8398 -5.5038 23 1 13.6584 -0.4884 -4.2602 24 1 13.0360 -2.6856 -3.4444 25 6 3.6480 -1.3124 -0.0011 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 0.9780 -2.6426 -0.9036 30 1 0.9485 -2.6308 0.8819 31 1 2.9603 -3.8764 -0.9834 32 1 2.4847 -4.3738 0.6720 33 1 5.3402 -3.1509 -0.9389 34 1 5.3106 -4.3327 0.3918 35 1 7.5852 -3.7093 2.0353 36 1 5.9543 -3.4067 2.6811 37 1 7.1669 -2.1035 2.6795 38 1 9.1101 -2.5102 -0.2057 39 1 8.0308 -2.7234 -1.6050 40 1 8.5027 -0.3968 -2.3224 41 1 9.5819 -0.1843 -0.9229 42 1 11.5219 1.1505 -3.7544 43 1 4.1060 -0.5385 0.6149 44 1 4.0334 -1.2652 -1.0196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116374159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:47 Heat of formation + Delta-G solvation = -110.716585 kcal Electronic energy + Delta-G solvation = -25686.988417 eV Core-core repulsion = 21959.452612 eV Total energy + Delta-G solvation = -3727.535806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.09871 -37.99579 -36.63661 -35.98091 -35.38149 -33.88419 -32.35472 -31.15685 -29.94815 -29.41085 -26.81283 -25.60233 -24.80623 -23.01684 -21.52925 -20.62080 -19.41547 -18.51668 -17.67827 -17.08858 -16.59770 -16.33630 -15.97826 -15.45404 -15.36614 -14.70981 -14.55383 -14.50370 -14.08210 -13.73894 -13.36443 -13.26410 -13.07581 -12.79032 -12.62675 -12.54397 -12.34416 -12.10879 -12.06752 -11.85056 -11.75145 -11.61731 -11.46110 -11.20261 -11.08228 -10.96074 -10.87552 -10.74130 -10.40787 -10.37655 -9.88287 -9.75544 -9.34154 -8.81770 -8.64879 -8.50056 -6.11755 -4.17770 0.74167 2.62333 2.93455 3.01670 3.26000 3.32208 3.34876 4.18205 4.27184 4.33976 4.40267 4.52162 4.62391 4.63027 4.88239 4.95335 5.06702 5.14013 5.17656 5.20784 5.23139 5.33033 5.36698 5.44590 5.53595 5.59144 5.61519 5.66416 5.68688 5.78183 5.82294 5.96846 6.13115 6.23431 6.36141 6.48616 6.62277 7.30802 7.36709 7.49214 7.80723 8.16011 8.17793 8.85650 9.46984 10.99203 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003264 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.067565 B = 8575.201734 C = 9106.212980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.519 3.481 3 O -0.540 6.540 4 N -0.624 5.624 5 C 0.102 3.898 6 C -0.125 4.125 7 C -0.123 4.123 8 H 0.087 0.913 9 C 0.137 3.863 10 N -1.011 6.011 11 C 0.085 3.915 12 S 2.583 3.417 13 O -0.955 6.955 14 O -0.963 6.963 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.107 3.893 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.074 0.926 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 -13.171 9.073 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.308 3.692 3 O -0.417 6.417 4 N -0.359 5.359 5 C -0.021 4.021 6 C -0.164 4.164 7 C -0.144 4.144 8 H 0.105 0.895 9 C 0.011 3.989 10 N -0.847 5.847 11 C -0.061 4.061 12 S 2.682 3.318 13 O -0.945 6.945 14 O -0.953 6.953 15 C -0.722 4.722 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.014 4.014 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.674 -11.458 9.130 24.530 hybrid contribution 1.087 -1.059 -0.665 1.657 sum -18.587 -12.517 8.465 23.954 Atomic orbital electron populations 1.21890 0.91719 1.05252 1.03852 1.20476 0.90249 0.82262 0.76243 1.90776 1.70757 1.30577 1.49540 1.48656 1.08142 1.05505 1.73640 1.22002 0.96332 0.82246 1.01530 1.22647 0.93959 0.97254 1.02526 1.22874 0.94940 0.95500 1.01120 0.89505 1.21162 0.84112 0.96279 0.97342 1.57722 1.47057 1.52308 1.27611 1.21522 0.99895 1.01353 0.83283 1.05957 0.76482 0.74232 0.75125 1.93556 1.55912 1.77368 1.67667 1.93529 1.81978 1.65907 1.53897 1.30479 1.16281 1.12640 1.12835 1.18964 0.95694 0.91067 0.95377 1.20999 1.12691 0.93956 1.28423 0.92080 1.25077 0.97903 0.94871 0.96658 1.69957 1.38842 1.03717 1.40218 0.86471 0.81601 0.78972 0.80244 1.20453 1.20980 1.19775 1.22656 0.79011 0.96133 1.03643 0.89730 0.89076 0.89607 0.91280 0.91520 0.89914 0.89774 0.89493 0.89882 0.92823 0.91277 0.89866 0.86406 0.86368 0.94785 0.94919 0.92495 0.90728 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.51 36.01 0.34 -1.03 16 2 C 0.52 7.23 7.96 -10.98 -0.09 7.14 16 3 O -0.54 -10.53 17.34 5.56 0.10 -10.43 16 4 N -0.62 -7.73 3.33 -170.52 -0.57 -8.29 16 5 C 0.10 0.75 6.49 -3.07 -0.02 0.74 16 6 C -0.13 -0.82 6.42 -24.90 -0.16 -0.98 16 7 C -0.12 -1.22 3.26 -88.47 -0.29 -1.50 16 8 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 9 C 0.14 1.35 4.95 -4.05 -0.02 1.33 16 10 N -1.01 -12.73 3.06 -121.76 -0.37 -13.11 16 11 C 0.08 0.87 10.66 59.85 0.64 1.51 16 12 S 2.58 46.23 5.35 -107.50 -0.58 45.66 16 13 O -0.95 -18.98 13.12 -57.54 -0.75 -19.73 16 14 O -0.96 -20.32 16.57 -57.54 -0.95 -21.27 16 15 C -0.59 -11.25 6.12 37.16 0.23 -11.02 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.11 1.56 4.70 -2.53 -0.01 1.54 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.76 8.12 -51.93 -0.42 0.33 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.49 8.04 -51.92 -0.42 0.07 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.87 7.43 -51.93 -0.39 0.49 16 34 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 37 H 0.08 0.99 6.91 -51.93 -0.36 0.63 16 38 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 44 H 0.10 1.65 6.23 -51.93 -0.32 1.32 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -38.34 368.74 -9.12 -47.47 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.34 Total: -1.16 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 0.07 Total: -14.95 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.20 Total: -47.39 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -1.61 Total: -51.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 46.23 SS G_CDS: -0.58 Total: 45.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.34 -9.12 -47.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116374159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.249 kcal (2) G-P(sol) polarization free energy of solvation -38.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds