Wall clock time and date at job start Tue Mar 31 2020 13:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 120.00006 * 2 1 4 4 N 1.34776 * 119.99800 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.65169 * 0.02562 * 4 2 1 6 6 C 1.54316 * 107.27171 * 181.01715 * 5 4 2 7 7 C 1.55157 * 102.94716 * 22.19094 * 6 5 4 8 8 H 1.09001 * 111.00400 * 82.60577 * 7 6 5 9 9 C 1.52991 * 111.00714 * 206.42615 * 7 6 5 10 10 N 1.46502 * 109.47137 * 185.00027 * 9 7 6 11 11 C 1.46499 * 120.00062 * 85.00126 * 10 9 7 12 12 S 1.65606 * 119.99935 * 264.99629 * 10 9 7 13 13 O 1.42104 * 104.27561 * 26.07637 * 12 10 9 14 14 O 1.42095 * 104.27253 * 153.92818 * 12 10 9 15 15 C 1.81392 * 104.45119 * 270.00294 * 12 10 9 16 16 C 1.53003 * 109.46872 * 180.02562 * 15 12 10 17 17 C 1.50706 * 109.46666 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99469 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47028 * 90.00181 * 21 19 17 23 23 H 1.48500 * 109.47296 * 209.99930 * 21 19 17 24 24 H 1.48496 * 109.47259 * 330.00180 * 21 19 17 25 25 C 1.47424 * 125.64773 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.46954 * 239.99767 * 1 2 3 27 27 H 1.08995 * 109.47042 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46834 * 120.00179 * 1 2 3 29 29 H 1.08999 * 109.87782 * 61.59444 * 5 4 2 30 30 H 1.09002 * 109.87896 * 300.43223 * 5 4 2 31 31 H 1.09008 * 110.71914 * 263.82979 * 6 5 4 32 32 H 1.08997 * 110.87372 * 140.62731 * 6 5 4 33 33 H 1.08999 * 109.47459 * 64.99930 * 9 7 6 34 34 H 1.09005 * 109.47209 * 304.99882 * 9 7 6 35 35 H 1.09002 * 109.47391 * 89.99876 * 11 10 9 36 36 H 1.09001 * 109.46813 * 329.99933 * 11 10 9 37 37 H 1.09004 * 109.47041 * 210.00060 * 11 10 9 38 38 H 1.08998 * 109.47145 * 299.99771 * 15 12 10 39 39 H 1.09000 * 109.47466 * 59.99926 * 15 12 10 40 40 H 1.09004 * 109.46728 * 299.99300 * 16 15 12 41 41 H 1.08997 * 109.47347 * 60.00139 * 16 15 12 42 42 H 0.96997 * 120.00119 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36796 * 37.07681 * 25 4 2 44 44 H 1.09000 * 110.36643 * 274.75565 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5747 -2.5067 -0.0017 6 6 2.7280 -3.5316 0.0243 7 6 3.9083 -2.7120 0.6096 8 1 3.8594 -2.6792 1.6980 9 6 5.2519 -3.2737 0.1406 10 7 6.3410 -2.5532 0.8047 11 6 6.7906 -2.9699 2.1353 12 16 7.0639 -1.2678 0.0513 13 8 6.0645 -0.7692 -0.8273 14 8 7.5646 -0.4731 1.1175 15 6 8.4290 -2.0038 -0.8896 16 6 9.1837 -0.9035 -1.6385 17 6 10.3181 -1.5150 -2.4197 18 1 10.4845 -2.5816 -2.3851 19 6 11.1437 -0.7127 -3.1786 20 7 10.9414 0.5861 -3.2203 21 14 12.5503 -1.4705 -4.1463 22 1 12.0748 -1.8398 -5.5038 23 1 13.6584 -0.4884 -4.2602 24 1 13.0360 -2.6856 -3.4444 25 6 3.6480 -1.3124 -0.0011 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 0.9780 -2.6426 -0.9036 30 1 0.9485 -2.6308 0.8819 31 1 2.9603 -3.8764 -0.9834 32 1 2.4847 -4.3738 0.6720 33 1 5.3402 -3.1509 -0.9389 34 1 5.3106 -4.3327 0.3918 35 1 7.5852 -3.7093 2.0353 36 1 5.9543 -3.4067 2.6811 37 1 7.1669 -2.1035 2.6795 38 1 9.1101 -2.5102 -0.2057 39 1 8.0308 -2.7234 -1.6050 40 1 8.5027 -0.3968 -2.3224 41 1 9.5819 -0.1843 -0.9229 42 1 11.5219 1.1505 -3.7544 43 1 4.1060 -0.5385 0.6149 44 1 4.0334 -1.2652 -1.0196 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116374159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:46 Heat of formation + Delta-G solvation = -140.735322 kcal Electronic energy + Delta-G solvation = -25688.290128 eV Core-core repulsion = 21959.452612 eV Total energy + Delta-G solvation = -3728.837516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.05138 -39.01693 -38.18016 -37.09087 -36.81353 -35.91683 -33.28786 -33.14152 -30.70614 -30.16170 -27.78193 -27.49957 -25.80708 -23.89215 -23.36255 -21.43769 -20.35369 -19.79924 -19.14622 -18.42043 -18.04803 -17.48418 -17.15657 -16.91836 -16.55501 -16.37135 -15.81019 -15.51260 -15.13118 -14.96251 -14.57691 -14.37966 -14.24157 -13.89221 -13.76675 -13.69683 -13.35576 -13.20070 -13.18007 -13.12919 -12.99741 -12.94194 -12.77939 -12.68850 -12.53932 -12.27503 -12.18629 -12.11328 -11.82402 -11.70680 -11.49926 -11.16399 -10.98245 -10.67493 -9.91804 -9.64828 -8.28044 -6.43358 -0.71391 1.39051 1.41727 1.52920 1.58857 1.76994 2.07306 2.36453 2.87563 3.04982 3.18306 3.40652 3.66896 3.78541 3.88578 3.96304 4.08006 4.14413 4.36376 4.43322 4.46770 4.51157 4.57047 4.62571 4.70706 4.71948 4.73968 4.85382 4.92611 5.00648 5.03569 5.11333 5.14994 5.18600 5.23221 5.24224 5.32298 5.45274 5.65455 5.70793 6.02838 6.57089 6.70865 7.14322 7.27340 8.84388 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.003264 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.067565 B = 8575.201734 C = 9106.212980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.500 3.500 3 O -0.617 6.617 4 N -0.625 5.625 5 C 0.092 3.908 6 C -0.113 4.113 7 C -0.116 4.116 8 H 0.096 0.904 9 C 0.127 3.873 10 N -0.999 5.999 11 C 0.076 3.924 12 S 2.599 3.401 13 O -0.983 6.983 14 O -1.003 7.003 15 C -0.586 4.586 16 C 0.020 3.980 17 C -0.539 4.539 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.977 3.023 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.255 1.255 25 C 0.099 3.901 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.003 0.997 41 H 0.000 1.000 42 H 0.267 0.733 43 H 0.023 0.977 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -18.228 9.576 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.292 3.708 3 O -0.500 6.500 4 N -0.358 5.358 5 C -0.029 4.029 6 C -0.152 4.152 7 C -0.137 4.137 8 H 0.114 0.886 9 C 0.002 3.998 10 N -0.838 5.838 11 C -0.069 4.069 12 S 2.697 3.303 13 O -0.973 6.973 14 O -0.993 6.993 15 C -0.718 4.718 16 C -0.018 4.018 17 C -0.578 4.578 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.800 3.200 22 H -0.194 1.194 23 H -0.209 1.209 24 H -0.179 1.179 25 C -0.024 4.024 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.320 -16.584 9.631 28.677 hybrid contribution 1.509 0.487 -0.769 1.762 sum -19.812 -16.097 8.862 27.021 Atomic orbital electron populations 1.21885 0.86797 1.05921 1.06593 1.21685 0.92654 0.81617 0.74852 1.90732 1.72649 1.33387 1.53216 1.48882 1.07479 1.07408 1.72077 1.22447 0.97111 0.79364 1.04018 1.22728 0.91339 0.97395 1.03693 1.22874 0.96555 0.92813 1.01445 0.88621 1.21602 0.82737 0.98391 0.97057 1.57281 1.47038 1.51284 1.28169 1.21819 1.02221 1.01081 0.81735 1.05119 0.75832 0.74967 0.74401 1.93536 1.56300 1.78708 1.68717 1.93469 1.82756 1.68100 1.55008 1.30364 1.16942 1.10975 1.13519 1.18807 0.95728 0.92543 0.94764 1.21531 1.13055 0.94917 1.28328 0.90334 1.26199 1.01150 0.95245 0.97931 1.70124 1.40392 1.05614 1.41491 0.85263 0.77515 0.78426 0.78753 1.19408 1.20911 1.17855 1.22528 0.80563 0.97994 1.01354 0.86528 0.89621 0.86813 0.89105 0.88614 0.89066 0.85799 0.90008 0.84751 0.90346 0.87560 0.92253 0.84282 0.83777 0.97830 0.98196 0.92393 0.95821 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.51 71.24 0.68 -1.55 16 2 C 0.50 14.37 7.96 87.66 0.70 15.06 16 3 O -0.62 -26.31 17.34 -3.04 -0.05 -26.37 16 4 N -0.62 -15.26 3.33 -811.80 -2.70 -17.96 16 5 C 0.09 1.00 6.49 86.73 0.56 1.56 16 6 C -0.11 -0.93 6.42 31.78 0.20 -0.73 16 7 C -0.12 -2.00 3.26 -9.40 -0.03 -2.03 16 8 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 9 C 0.13 2.11 4.95 86.38 0.43 2.54 16 10 N -1.00 -23.75 3.06 -539.13 -1.65 -25.41 16 11 C 0.08 1.36 10.66 127.77 1.36 2.73 16 12 S 2.60 97.37 5.35 -56.49 -0.30 97.07 16 13 O -0.98 -42.20 13.12 -127.65 -1.67 -43.87 16 14 O -1.00 -45.16 16.57 -127.65 -2.12 -47.28 16 15 C -0.59 -22.66 6.12 71.98 0.44 -22.22 16 16 C 0.02 1.11 4.98 29.85 0.15 1.26 16 17 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 18 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 21 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 25 C 0.10 2.99 4.70 86.86 0.41 3.40 16 26 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.65 8.04 -2.38 -0.02 0.63 16 32 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.08 1.49 7.43 -2.39 -0.02 1.47 16 34 H 0.13 0.99 8.11 -2.38 -0.02 0.97 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.16 8.07 -2.39 -0.02 1.15 16 37 H 0.06 1.38 6.91 -2.38 -0.02 1.37 16 38 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 39 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 40 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.02 0.92 7.68 -2.39 -0.02 0.90 16 44 H 0.07 2.51 6.23 -2.39 -0.01 2.49 16 Total: -1.00 -94.95 368.74 0.38 -94.58 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.97 Total: 11.97 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 5.59 Total: -30.17 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.07 Total: -101.73 kcal Atomic # 8 Polarization: -113.67 SS G_CDS: -3.84 Total: -117.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 97.37 SS G_CDS: -0.30 Total: 97.07 kcal Total: -94.95 0.38 -94.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116374159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.158 kcal (2) G-P(sol) polarization free energy of solvation -94.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds